Speed up cataloging by replacing globs searching with index lookups (#1510)

* replace raw globs with index equivelent operations

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add cataloger test for alpm cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* fix import sorting for binary cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* fix linting for mock resolver

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* separate portage cataloger parser impl from cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* enhance cataloger pkgtest utils to account for resolver responses

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for alpm cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for apkdb cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for dpkg cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for cpp cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for dart cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for dotnet cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for elixir cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for erlang cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for golang cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for haskell cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for java cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for javascript cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for php cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for portage cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for python cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for rpm cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for rust cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for sbom cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for swift cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* allow generic catloger to run all mimetype searches at once

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* remove stutter from php and javascript cataloger constructors

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* bump stereoscope

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add tests for generic.Search

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add exceptions for java archive git ignore entries

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* enhance basename and extension resolver methods to be variadic

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* dont allow * prefix on extension searches

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* add glob-based cataloger tests for ruby cataloger

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* remove unnecessary string casting

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* incorporate surfacing of leaf link resolitions from stereoscope results

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* [wip] switch to stereoscope file metadata

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* [wip + failing] revert to old globs but keep new resolvers

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* index files, links, and dirs within the directory resolver

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* fix several resolver bugs and inconsistencies

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* move format testutils to internal package

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* update syft json to account for file type string normalization

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* split up directory resolver from indexing

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* update docs to include details about searching

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* [wip] bump stereoscope to development version

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* fix linting

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* adjust symlinks fixture to be fixed to digest

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* fix all-locations resolver tests

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* fix test fixture reference

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* rename file.Type

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* bump stereoscope

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* fix PR comment to exclude extra *

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* bump to dev version of stereoscope

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* bump to final version of stereoscope

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

* move observing resolver to pkgtest

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

---------

Signed-off-by: Alex Goodman <alex.goodman@anchore.com>

go.mod

@@ -52,7 +52,7 @@ require (
 	github.com/CycloneDX/cyclonedx-go v0.7.1-0.20221222100750-41a1ac565cce
 	github.com/Masterminds/sprig/v3 v3.2.3
 	github.com/anchore/go-logger v0.0.0-20220728155337-03b66a5207d8
-	github.com/anchore/stereoscope v0.0.0-20230203152723-c49244e4d66f
+	github.com/anchore/stereoscope v0.0.0-20230208154630-5a306f07f2e7
 	github.com/docker/docker v23.0.0+incompatible
 	github.com/google/go-containerregistry v0.13.0
 	github.com/invopop/jsonschema v0.7.0
@@ -60,7 +60,7 @@ require (
 	github.com/opencontainers/go-digest v1.0.0
 	github.com/sassoftware/go-rpmutils v0.2.0
 	github.com/vbatts/go-mtree v0.5.2
-	golang.org/x/exp v0.0.0-20220823124025-807a23277127
+	golang.org/x/exp v0.0.0-20230202163644-54bba9f4231b
 	gopkg.in/yaml.v3 v3.0.1
 )
 
@@ -70,6 +70,7 @@ require (
 	github.com/Masterminds/semver/v3 v3.2.0 // indirect
 	github.com/Microsoft/go-winio v0.6.0 // indirect
 	github.com/anchore/go-struct-converter v0.0.0-20221118182256-c68fdcfa2092 // indirect
+	github.com/becheran/wildmatch-go v1.0.0 // indirect
 	github.com/containerd/containerd v1.6.12 // indirect
 	github.com/containerd/stargz-snapshotter/estargz v0.12.1 // indirect
 	github.com/davecgh/go-spew v1.1.1 // indirect
@@ -127,7 +128,7 @@ require (
 	golang.org/x/sync v0.1.0 // indirect
 	golang.org/x/sys v0.5.0 // indirect
 	golang.org/x/text v0.7.0 // indirect
-	golang.org/x/tools v0.1.12 // indirect
+	golang.org/x/tools v0.2.0 // indirect
 	golang.org/x/xerrors v0.0.0-20220907171357-04be3eba64a2 // indirect
 	google.golang.org/genproto v0.0.0-20221227171554-f9683d7f8bef // indirect
 	google.golang.org/grpc v1.52.0 // indirect