docs: fix ocaml, php, and portage capabilities yaml

Signed-off-by: Will Murphy <willmurphyscode@users.noreply.github.com>

internal/capabilities/packages/gentoo.yaml

@@ -32,13 +32,11 @@ catalogers:
           - name: license
             default: true
           - name: dependency.depth
-            default:
+            default: []
-              - direct
           - name: dependency.edges
             default: ""
           - name: dependency.kinds
-            default:
+            default: []
-              - runtime
           - name: package_manager.files.listing
             default: true
             evidence:

internal/capabilities/packages/ocaml.yaml

@@ -30,13 +30,11 @@ catalogers:
           - name: license
             default: true
           - name: dependency.depth
-            default:
+            default: []
-              - direct
           - name: dependency.edges
             default: ""
           - name: dependency.kinds
-            default:
+            default: []
-              - runtime
           - name: package_manager.files.listing
             default: false
           - name: package_manager.files.digests

internal/capabilities/packages/php.yaml

@@ -105,6 +105,7 @@ catalogers:
     detectors: # MANUAL - edit detectors here
       - method: glob
         criteria:
+          - '**/php*'
           - '**/php*/**/*.so'
           - '**/php-fpm*'
           - '**/apache*/**/libphp*.so'

internal/capabilities/packages/swipl.yaml

@@ -30,14 +30,11 @@ catalogers:
           - name: license
             default: false
           - name: dependency.depth
-            default:
+            default: []
-              - direct
           - name: dependency.edges
             default: ""
           - name: dependency.kinds
-            default:
+            default: []
-              - runtime
-              - dev
           - name: package_manager.files.listing
             default: false
           - name: package_manager.files.digests