chore(deps): update stereoscope to bcc40c6817524718277256d6b774ce643f98640a (#3388)

Signed-off-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: willmurphyscode <12529630+willmurphyscode@users.noreply.github.com>

.binny.yaml

@@ -26,7 +26,7 @@ tools:
   # used for linting
   - name: golangci-lint
     version:
-      want: v1.59.1
+      want: v1.61.0
     method: github-release
     with:
       repo: golangci/golangci-lint
@@ -34,7 +34,7 @@ tools:
   # used for showing the changelog at release
   - name: glow
     version:
-      want: v1.5.1
+      want: v2.0.0
     method: github-release
     with:
       repo: charmbracelet/glow
@@ -42,7 +42,7 @@ tools:
   # used for signing the checksums file at release
   - name: cosign
     version:
-      want: v2.3.0
+      want: v2.4.1
     method: github-release
     with:
       repo: sigstore/cosign
@@ -58,7 +58,7 @@ tools:
   # used to release all artifacts
   - name: goreleaser
     version:
-      want: v2.1.0
+      want: v2.3.2
     method: github-release
     with:
       repo: goreleaser/goreleaser
@@ -103,7 +103,7 @@ tools:
   # used for running all local and CI tasks
   - name: task
     version:
-      want: v3.38.0
+      want: v3.39.2
     method: github-release
     with:
       repo: go-task/task
@@ -111,7 +111,23 @@ tools:
   # used for triggering a release
   - name: gh
     version:
-      want: v2.54.0
+      want: v2.60.1
     method: github-release
     with:
       repo: cli/cli
+
+  # used to upload test fixture cache
+  - name: oras
+    version:
+      want: v1.2.0
+    method: github-release
+    with:
+      repo: oras-project/oras
+
+  # used to upload test fixture cache
+  - name: yq
+    version:
+      want: v4.44.3
+    method: github-release
+    with:
+      repo: mikefarah/yq

.github/ISSUE_TEMPLATE/config.yml

@@ -1,6 +1,6 @@
 contact_links:
 
-  - name: Join the Slack community 💬
-    # link to our community Slack registration page
-    url: https://anchore.com/slack
+  - name: Join our Discourse community 💬
+    # link to our community Discourse site
+    url: https://anchore.com/discourse
     about: 'Come chat with us! Ask for help, join our software development efforts, or just give us feedback!'

.github/actions/bootstrap/action.yaml

@@ -13,16 +13,15 @@ inputs:
   cache-key-prefix:
     description: "Prefix all cache keys with this value"
     required: true
-    default: "1ac8281053"
-  compute-fingerprints:
-    description: "Compute test fixture fingerprints"
+    default: "181053ac82"
+  download-test-fixture-cache:
+    description: "Download test fixture cache from OCI and github actions"
     required: true
-    default: "true"
+    default: "false"
   bootstrap-apt-packages:
     description: "Space delimited list of tools to install via apt"
     default: "libxml2-utils"
 
-
 runs:
   using: "composite"
   steps:
@@ -54,8 +53,14 @@ runs:
       run: |
         DEBIAN_FRONTEND=noninteractive sudo apt update && sudo -E apt install -y ${{ inputs.bootstrap-apt-packages }}
 
-    - name: Create all cache fingerprints
-      if: inputs.compute-fingerprints == 'true'
-      shell: bash
-      run: make fingerprints
+    - name: Restore ORAS cache from github actions
+      if: inputs.download-test-fixture-cache == 'true'
+      uses: actions/cache@704facf57e6136b1bc63b828d79edcd491f0ee84 # v3.3.2
+      with:
+        path: ${{ github.workspace }}/.tmp/oras-cache
+        key: ${{ inputs.cache-key-prefix }}-oras-cache
 
+    - name: Download test fixture cache
+      if: inputs.download-test-fixture-cache == 'true'
+      shell: bash
+      run: make download-test-fixture-cache

.github/pull_request_template.md

@@ -0,0 +1,25 @@
+# Description
+
+Please include a summary of the changes along with any relevant motivation and context,
+or link to an issue where this is explained.
+
+<!-- If this completes an issue, please include: -->
+
+- Fixes #
+
+## Type of change
+
+<!-- Delete any that are not relevant -->
+
+- [ ] Bug fix (non-breaking change which fixes an issue)
+- [ ] New feature (non-breaking change which adds functionality)
+- [ ] Breaking change (please discuss with the team first; Syft is 1.0 software and we won't accept breaking changes without going to 2.0)
+- [ ] Documentation (updates the documentation)
+- [ ] Chore (improve the developer experience, fix a test flake, etc, without changing the visible behavior of Syft)
+- [ ] Performance (make Syft run faster or use less memory, without changing visible behavior much)
+
+# Checklist:
+
+- [ ] I have added unit tests that cover changed behavior
+- [ ] I have tested my code in common scenarios and confirmed there are no regressions
+- [ ] I have added comments to my code, particularly in hard-to-understand sections

.github/scripts/find_cache_paths.py

@@ -0,0 +1,135 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import os
+import glob
+import sys
+import json
+import hashlib
+
+
+IGNORED_PREFIXES = []
+
+
+def find_fingerprints_and_check_dirs(base_dir):
+    all_fingerprints = set(glob.glob(os.path.join(base_dir, '**', 'test*', '**', '*.fingerprint'), recursive=True))
+
+    all_fingerprints = {os.path.relpath(fp) for fp in all_fingerprints
+                        if not any(fp.startswith(prefix) for prefix in IGNORED_PREFIXES)}
+
+    if not all_fingerprints:
+        show("No .fingerprint files or cache directories found.")
+        exit(1)
+
+    missing_content = []
+    valid_paths = set()
+    fingerprint_contents = []
+
+    for fingerprint in all_fingerprints:
+        path = fingerprint.replace('.fingerprint', '')
+
+        if not os.path.exists(path):
+            missing_content.append(path)
+            continue
+
+        if not os.path.isdir(path):
+            valid_paths.add(path)
+            continue
+
+        if os.listdir(path):
+            valid_paths.add(path)
+        else:
+            missing_content.append(path)
+
+        with open(fingerprint, 'r') as f:
+            content = f.read().strip()
+            fingerprint_contents.append((fingerprint, content))
+
+    return sorted(valid_paths), missing_content, fingerprint_contents
+
+
+def parse_fingerprint_contents(fingerprint_content):
+    input_map = {}
+    for line in fingerprint_content.splitlines():
+        digest, path = line.split()
+        input_map[path] = digest
+    return input_map
+
+
+def calculate_sha256(fingerprint_contents):
+    sorted_fingerprint_contents = sorted(fingerprint_contents, key=lambda x: x[0])
+
+    concatenated_contents = ''.join(content for _, content in sorted_fingerprint_contents)
+
+    sha256_hash = hashlib.sha256(concatenated_contents.encode()).hexdigest()
+
+    return sha256_hash
+
+
+def calculate_file_sha256(file_path):
+    sha256_hash = hashlib.sha256()
+    with open(file_path, 'rb') as f:
+        for byte_block in iter(lambda: f.read(4096), b""):
+            sha256_hash.update(byte_block)
+    return sha256_hash.hexdigest()
+
+
+def show(*s: str):
+    print(*s, file=sys.stderr)
+
+
+def main(file_path: str | None):
+    base_dir = '.'
+    valid_paths, missing_content, fingerprint_contents = find_fingerprints_and_check_dirs(base_dir)
+
+    if missing_content:
+        show("The following paths are missing or have no content, but have corresponding .fingerprint files:")
+        for path in sorted(missing_content):
+            show(f"- {path}")
+        show("Please ensure these paths exist and have content if they are directories.")
+        exit(1)
+
+    sha256_hash = calculate_sha256(fingerprint_contents)
+
+    paths_with_digests = []
+    for path in sorted(valid_paths):
+        fingerprint_file = f"{path}.fingerprint"
+        try:
+            if os.path.exists(fingerprint_file):
+                file_digest = calculate_file_sha256(fingerprint_file)
+
+                # Parse the fingerprint file to get the digest/path tuples
+                with open(fingerprint_file, 'r') as f:
+                    fingerprint_content = f.read().strip()
+                    input_map = parse_fingerprint_contents(fingerprint_content)
+
+                paths_with_digests.append({
+                    "path": path,
+                    "digest": file_digest,
+                    "input": input_map
+                })
+
+        except Exception as e:
+            show(f"Error processing {fingerprint_file}: {e}")
+            raise e
+
+
+    output = {
+        "digest": sha256_hash,
+        "paths": paths_with_digests
+    }
+
+    content = json.dumps(output, indent=2, sort_keys=True)
+
+    if file_path:
+        with open(file_path, 'w') as f:
+            f.write(content)
+
+    print(content)
+
+
+if __name__ == "__main__":
+    file_path = None
+    if len(sys.argv) > 1:
+        file_path = sys.argv[1]
+    main(file_path)

.github/scripts/fingerprint_docker_fixtures.py

@@ -0,0 +1,70 @@
+#!/usr/bin/env python3
+
+import os
+import subprocess
+import hashlib
+
+BOLD = '\033[1m'
+YELLOW = '\033[0;33m'
+RESET = '\033[0m'
+
+
+def print_message(message):
+    print(f"{YELLOW}{message}{RESET}")
+
+
+def sha256sum(filepath):
+    h = hashlib.sha256()
+    with open(filepath, 'rb') as f:
+        for chunk in iter(lambda: f.read(4096), b""):
+            h.update(chunk)
+    return h.hexdigest()
+
+
+def is_git_tracked_or_untracked(directory):
+    """Returns a sorted list of files in the directory that are tracked or not ignored by Git."""
+    result = subprocess.run(
+        ["git", "ls-files", "--cached", "--others", "--exclude-standard"],
+        cwd=directory,
+        stdout=subprocess.PIPE,
+        text=True
+    )
+    return sorted(result.stdout.strip().splitlines())
+
+
+def find_test_fixture_dirs_with_images(base_dir):
+    """Find directories that contain 'test-fixtures' and at least one 'image-*' directory."""
+    for root, dirs, files in os.walk(base_dir):
+        if 'test-fixtures' in root:
+            image_dirs = [d for d in dirs if d.startswith('image-')]
+            if image_dirs:
+                yield os.path.realpath(root)
+
+
+def generate_fingerprints():
+    print_message("creating fingerprint files for docker fixtures...")
+
+    for test_fixture_dir in find_test_fixture_dirs_with_images('.'):
+        cache_fingerprint_path = os.path.join(test_fixture_dir, 'cache.fingerprint')
+
+        with open(cache_fingerprint_path, 'w') as fingerprint_file:
+            for image_dir in find_image_dirs(test_fixture_dir):
+                for file in is_git_tracked_or_untracked(image_dir):
+                    file_path = os.path.join(image_dir, file)
+                    checksum = sha256sum(file_path)
+                    path_from_fixture_dir = os.path.relpath(file_path, test_fixture_dir)
+                    fingerprint_file.write(f"{checksum}  {path_from_fixture_dir}\n")
+
+
+def find_image_dirs(test_fixture_dir):
+    """Find all 'image-*' directories inside a given test-fixture directory."""
+    result = []
+    for root, dirs, files in os.walk(test_fixture_dir):
+        for dir_name in dirs:
+            if dir_name.startswith('image-'):
+                result.append(os.path.join(root, dir_name))
+    return sorted(result)
+
+
+if __name__ == "__main__":
+    generate_fingerprints()

.github/scripts/labeler.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python3
+
 from __future__ import annotations
 
 import sys

.github/scripts/labeler_test.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python3
+
 import unittest
 from unittest.mock import patch
 import subprocess

.github/workflows/benchmark-testing.yaml

@@ -17,13 +17,13 @@ jobs:
     # the job by event.
     steps:
       - name: Checkout code
-        uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
 
       - name: Restore base benchmark result
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
+        uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a #v4.1.2
         with:
           path: test/results/benchmark-main.txt
           # use base sha for PR or new commit hash for main push in benchmark result key
@@ -39,7 +39,7 @@ jobs:
           OUTPUT="${OUTPUT//$'\r'/'%0D'}" # URL encode all '\r' characters
           echo "result=$OUTPUT" >> $GITHUB_OUTPUT
 
-      - uses: actions/upload-artifact@89ef406dd8d7e03cfd12d9e0a4a378f454709029 # v4.3.5
+      - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3
         with:
           name: benchmark-test-results
           path: test/results/**/*

.github/workflows/codeql-analysis.yml

@@ -36,16 +36,16 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
     - name: Install Go
-      uses: actions/setup-go@0a12ed9d6a96ab950c8f026ed9f722fe0da7ef32 #v5.0.2
+      uses: actions/setup-go@41dfa10bad2bb2ae585af6ee5bb4d7d973ad74ed #v5.1.0
       with:
         go-version-file: go.mod
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a #v3.25.15
+      uses: github/codeql-action/init@662472033e021d55d94146f66f6058822b0b39fd #v3.27.0
       with:
         languages: ${{ matrix.language }}
         # If you wish to specify custom queries, you can do so here or in a config file.
@@ -56,7 +56,7 @@ jobs:
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
-      uses: github/codeql-action/autobuild@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a #v3.25.15
+      uses: github/codeql-action/autobuild@662472033e021d55d94146f66f6058822b0b39fd #v3.27.0
 
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 https://git.io/JvXDl
@@ -70,4 +70,4 @@ jobs:
     #   make release
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a #v3.25.15
+      uses: github/codeql-action/analyze@662472033e021d55d94146f66f6058822b0b39fd #v3.27.0

.github/workflows/detect-schema-changes.yaml

@@ -30,7 +30,7 @@ jobs:
     runs-on: ubuntu-22.04
     steps:
 
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - run: python .github/scripts/labeler.py
         env:

.github/workflows/release-version-file.yaml

@@ -1,4 +1,4 @@
-name: "Release"
+name: "Release: version file"
 
 on:
 
@@ -20,7 +20,7 @@ jobs:
   release:
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Update version file
         run: make ci-release-version-file

.github/workflows/release.yaml

@@ -15,7 +15,7 @@ jobs:
     environment: release
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Check if running on main
         if: github.ref != 'refs/heads/main'
@@ -105,7 +105,7 @@ jobs:
       # required for goreleaser signs section with cosign
       id-token: write
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
         with:
           fetch-depth: 0
 
@@ -148,7 +148,7 @@ jobs:
           # for updating brew formula in anchore/homebrew-syft
           GITHUB_BREW_TOKEN: ${{ secrets.ANCHOREOPS_GITHUB_OSS_WRITE_TOKEN }}
 
-      - uses: anchore/sbom-action@d94f46e13c6c62f59525ac9a1e147a99dc0b9bf5 #v0.17.0
+      - uses: anchore/sbom-action@1ca97d9028b51809cf6d3c934c3e160716e1b605 #v0.17.5
         continue-on-error: true
         with:
           artifact-name: sbom.spdx.json

.github/workflows/remove-awaiting-response-label.yaml

@@ -0,0 +1,11 @@
+name: "Manage Awaiting Response Label"
+
+on:
+  issue_comment:
+    types: [created]
+
+jobs:
+  run:
+    uses: "anchore/workflows/.github/workflows/remove-awaiting-response-label.yaml@main"
+    secrets:
+      token: ${{ secrets.OSS_PROJECT_GH_TOKEN }}

.github/workflows/test-fixture-cache-publish.yaml

@@ -0,0 +1,39 @@
+name: "Test fixture cache: publish"
+
+on:
+  workflow_dispatch:
+  schedule:
+    # run nightly at 4AM UTC
+    - cron: "0 4 * * *"
+
+permissions:
+  contents: read
+
+jobs:
+
+  Publish:
+    name: "Publish test fixture image cache"
+    # we use this runner to get enough storage space for docker images and fixture cache
+    runs-on: ubuntu-22.04-4core-16gb
+    permissions:
+      packages: write
+    steps:
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
+
+      - name: Bootstrap environment
+        uses: ./.github/actions/bootstrap
+        with:
+          # we want to rebuild the cache with no previous state
+          download-test-fixture-cache: false
+
+      - name: Run all tests
+        run: make test
+        env:
+          # we want to rebuild the cache with no previous state
+          DOWNLOAD_TEST_FIXTURE_CACHE: "false"
+
+      - name: Login to GitHub Container Registry (ORAS)
+        run: echo "${{ secrets.GITHUB_TOKEN }}" | .tool/oras login ghcr.io -u ${{ github.actor }} --password-stdin
+
+      - name: Publish test fixture cache
+        run: make upload-test-fixture-cache

.github/workflows/update-bootstrap-tools.yml

@@ -13,13 +13,12 @@ jobs:
     runs-on: ubuntu-latest
     if: github.repository == 'anchore/syft' # only run for main repo
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
         with:
           bootstrap-apt-packages: ""
-          compute-fingerprints: "false"
           go-dependencies: false
 
       - name: "Update tool versions"
@@ -50,7 +49,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c #v6.1.0
+      - uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f #v7.0.5
         with:
           signoff: true
           delete-branch: true

.github/workflows/update-cpe-dictionary-index.yml

@@ -16,7 +16,7 @@ jobs:
     runs-on: ubuntu-latest
     if: github.repository == 'anchore/syft' # only run for main repo
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
@@ -33,7 +33,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c #v6.1.0
+      - uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f #v7.0.5
         with:
           signoff: true
           delete-branch: true

.github/workflows/update-stereoscope-release.yml

@@ -17,9 +17,9 @@ jobs:
     runs-on: ubuntu-latest
     if: github.repository == 'anchore/syft' # only run for main repo
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
-      - uses: actions/setup-go@0a12ed9d6a96ab950c8f026ed9f722fe0da7ef32 #v5.0.2
+      - uses: actions/setup-go@41dfa10bad2bb2ae585af6ee5bb4d7d973ad74ed #v5.1.0
         with:
           go-version: ${{ env.GO_VERSION }}
           stable: ${{ env.GO_STABLE_VERSION }}
@@ -44,7 +44,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c #v6.1.0
+      - uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f #v7.0.5
         with:
           signoff: true
           delete-branch: true

.github/workflows/validations.yaml

@@ -17,7 +17,7 @@ jobs:
     name: "Static analysis"
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
@@ -31,52 +31,12 @@ jobs:
     name: "Unit tests"
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
-
-      - name: Restore file executable test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
         with:
-          path: syft/file/cataloger/executable/test-fixtures/elf/bin
-          key: ${{ runner.os }}-unit-file-executable-elf-cache-${{ hashFiles( 'syft/file/cataloger/executable/test-fixtures/elf/cache.fingerprint' ) }}
-
-      - name: Restore file executable shared-info test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/file/cataloger/executable/test-fixtures/shared-info/bin
-          key: ${{ runner.os }}-unit-file-executable-shared-info-cache-${{ hashFiles( 'syft/file/cataloger/executable/test-fixtures/shared-info/cache.fingerprint' ) }}
-
-      - name: Restore Java test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/java/test-fixtures/java-builds/packages
-          key: ${{ runner.os }}-unit-java-cache-${{ hashFiles( 'syft/pkg/cataloger/java/test-fixtures/java-builds/cache.fingerprint' ) }}
-
-      - name: Restore RPM test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/redhat/test-fixtures/rpms
-          key: ${{ runner.os }}-unit-rpm-cache-${{ hashFiles( 'syft/pkg/cataloger/redhat/test-fixtures/rpms.fingerprint' ) }}
-
-      - name: Restore go binary test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/golang/test-fixtures/archs/binaries
-          key: ${{ runner.os }}-unit-go-binaries-cache-${{ hashFiles( 'syft/pkg/cataloger/golang/test-fixtures/archs/binaries.fingerprint' ) }}
-
-      - name: Restore binary cataloger test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/binary/test-fixtures/classifiers/bin
-          key: ${{ runner.os }}-unit-binary-cataloger-cache-${{ hashFiles( 'syft/pkg/cataloger/binary/test-fixtures/cache.fingerprint' ) }}
-
-      - name: Restore Kernel test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/kernel/test-fixtures/cache
-          key: ${{ runner.os }}-unit-kernel-cache-${{ hashFiles( 'syft/pkg/cataloger/kernel/test-fixtures/cache.fingerprint' ) }}
+          download-test-fixture-cache: true
 
       - name: Run unit tests
         run: make unit
@@ -87,20 +47,16 @@ jobs:
     name: "Integration tests"
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
+        with:
+          download-test-fixture-cache: true
 
       - name: Validate syft output against the CycloneDX schema
         run: make validate-cyclonedx-schema
 
-      - name: Restore integration test cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: ${{ github.workspace }}/cmd/syft/internal/test/integration/test-fixtures/cache
-          key: ${{ runner.os }}-integration-test-cache-${{ hashFiles('/cmd/syft/internal/test/integration/test-fixtures/cache.fingerprint') }}
-
       - name: Run integration tests
         run: make integration
 
@@ -109,7 +65,7 @@ jobs:
     name: "Build snapshot artifacts"
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
@@ -122,7 +78,7 @@ jobs:
       # why not use actions/upload-artifact? It is very slow (3 minutes to upload ~600MB of data, vs 10 seconds with this approach).
       # see https://github.com/actions/upload-artifact/issues/199 for more info
       - name: Upload snapshot artifacts
-        uses: actions/cache/save@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
+        uses: actions/cache/save@6849a6489940f00c2f30c0fb92c6274307ccb58a #v4.1.2
         with:
           # we need to preserve the snapshot data itself as well as the task data that confirms if the
           # snapshot build is stale or not. Otherwise the downstream jobs will attempt to rebuild the snapshot
@@ -139,14 +95,16 @@ jobs:
     needs: [Build-Snapshot-Artifacts]
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
+        with:
+          download-test-fixture-cache: true
 
       - name: Download snapshot build
         id: snapshot-cache
-        uses: actions/cache/restore@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
+        uses: actions/cache/restore@6849a6489940f00c2f30c0fb92c6274307ccb58a #v4.1.2
         with:
           path: |
             snapshot
@@ -162,13 +120,6 @@ jobs:
       - name: Run comparison tests (Linux)
         run: make compare-linux
 
-      - name: Restore install.sh test image cache
-        id: install-test-image-cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: ${{ github.workspace }}/test/install/cache
-          key: ${{ runner.os }}-install-test-image-cache-${{ hashFiles('test/install/cache.fingerprint') }}
-
       - name: Load test image cache
         if: steps.install-test-image-cache.outputs.cache-hit == 'true'
         run: make install-test-cache-load
@@ -188,20 +139,20 @@ jobs:
     runs-on: macos-latest
     steps:
       - name: Install Cosign
-        uses: sigstore/cosign-installer@v3.5.0
+        uses: sigstore/cosign-installer@v3.7.0
 
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
         with:
           bootstrap-apt-packages: ""
-          compute-fingerprints: "false"
           go-dependencies: false
+          download-test-fixture-cache: true
 
       - name: Download snapshot build
         id: snapshot-cache
-        uses: actions/cache/restore@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
+        uses: actions/cache/restore@6849a6489940f00c2f30c0fb92c6274307ccb58a #v4.1.2
         with:
           path: |
             snapshot
@@ -214,13 +165,6 @@ jobs:
         if: steps.snapshot-cache.outputs.cache-hit != 'true'
         run: echo "unable to download snapshots from previous job" && false
 
-      - name: Restore docker image cache for compare testing
-        id: mac-compare-testing-cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: image.tar
-          key: ${{ runner.os }}-${{ hashFiles('test/compare/mac.sh') }}
-
       - name: Run comparison tests (Mac)
         run: make compare-mac
 
@@ -234,20 +178,16 @@ jobs:
     needs: [Build-Snapshot-Artifacts]
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
-
-      - name: Restore CLI test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
         with:
-          path: ${{ github.workspace }}/test/cli/test-fixtures/cache
-          key: ${{ runner.os }}-cli-test-cache-${{ hashFiles('test/cli/test-fixtures/cache.fingerprint') }}
+          download-test-fixture-cache: true
 
       - name: Download snapshot build
         id: snapshot-cache
-        uses: actions/cache/restore@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
+        uses: actions/cache/restore@6849a6489940f00c2f30c0fb92c6274307ccb58a #v4.1.2
         with:
           path: |
             snapshot
@@ -262,3 +202,22 @@ jobs:
 
       - name: Run CLI Tests (Linux)
         run: make cli
+
+
+  Cleanup-Cache:
+    name: "Cleanup snapshot cache"
+    if: github.event.pull_request.head.repo.full_name == github.repository
+    runs-on: ubuntu-20.04
+    permissions:
+      actions: write
+    needs:
+      - Acceptance-Linux
+      - Acceptance-Mac
+      - Cli-Linux
+    steps:
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
+
+      - name: Delete snapshot cache
+        run: gh cache delete "snapshot-build-${{ github.run_id }}"
+        env:
+          GH_TOKEN: ${{ github.token }}

.golangci.yaml

@@ -12,10 +12,10 @@ linters:
   enable:
     - asciicheck
     - bodyclose
+    - copyloopvar
     - dogsled
     - dupl
     - errcheck
-    - exportloopref
     - funlen
     - gocognit
     - goconst
@@ -30,6 +30,7 @@ linters:
     - ineffassign
     - misspell
     - nakedret
+    - nolintlint
     - revive
     - staticcheck
     - stylecheck
@@ -56,6 +57,9 @@ linters-settings:
     settings:
       ruleguard:
         rules: "test/rules/rules.go"
+  gosec:
+    excludes:
+      - G115
 output:
   uniq-by-line: false
 run:
@@ -80,7 +84,6 @@ run:
 #    - lll         # without a way to specify per-line exception cases, this is not usable
 #    - maligned    # this is an excellent linter, but tricky to optimize and we are not sensitive to memory layout optimizations
 #    - nestif
-#    - nolintlint   # as of go1.19 this conflicts with the behavior of gofmt, which is a deal-breaker (lint-fix will still fail when running lint)
 #    - prealloc     # following this rule isn't consistently a good idea, as it sometimes forces unnecessary allocations that result in less idiomatic code
 #    - rowserrcheck # not in a repo with sql, so this is not useful
 #    - scopelint    # deprecated

DEVELOPING.md

@@ -83,7 +83,7 @@ Syft's core library is implemented in the `syft` package and subpackages, where
 - the `syft` package contains a single function that can take a `source.Source` object and catalog it, producing an `sbom.SBOM` object
 - the `syft/format` package contains the ability to encode and decode SBOMs to and from different SBOM formats (such as SPDX and CycloneDX)
 
-The `cmd` pacakge at the highest level execution flow wires up [`spf13/cobra`](https://github.com/spf13/cobra) commands for execution in the main application:
+The `cmd` package at the highest level execution flow wires up [`spf13/cobra`](https://github.com/spf13/cobra) commands for execution in the main application:
 ```mermaid
 sequenceDiagram
     participant main as cmd/syft/main
@@ -212,7 +212,7 @@ Finally, here is an example of where the package construction is done within the
 - [The APK package constructor itself](https://github.com/anchore/syft/tree/v0.70.0/syft/pkg/cataloger/apkdb/package.go#L12-L27)
 
 Interested in building a new cataloger? Checkout the [list of issues with the `new-cataloger` label](https://github.com/anchore/syft/issues?q=is%3Aopen+is%3Aissue+label%3Anew-cataloger+no%3Aassignee)!
-If you have questions about implementing a cataloger feel free to file an issue or reach out to us [on slack](https://anchore.com/slack)!
+If you have questions about implementing a cataloger feel free to file an issue or reach out to us [on discourse](https://anchore.com/discourse)!
 
 
 #### Searching for files

Makefile

@@ -25,8 +25,8 @@ ci-bootstrap-go:
 
 # this is a bootstrapping catch-all, where if the target doesn't exist, we'll ensure the tools are installed and then try again
 %:
-	make $(TASK)
-	$(TASK) $@
+	@make --silent $(TASK)
+	@$(TASK) $@
 
 ## Shim targets #################################
 

README.md

@@ -12,7 +12,8 @@
  &nbsp;<a href="https://github.com/anchore/syft/releases/latest" target="_blank"><img alt="GitHub release" src="https://img.shields.io/github/release/anchore/syft.svg"></a>&nbsp;
  &nbsp;<a href="https://github.com/anchore/syft" target="_blank"><img alt="GitHub go.mod Go version" src="https://img.shields.io/github/go-mod/go-version/anchore/syft.svg"></a>&nbsp;
  &nbsp;<a href="" target="_blank"><img alt="License: Apache-2.0" src="https://img.shields.io/badge/License-Apache%202.0-blue.svg"></a>&nbsp;
- &nbsp;<a href="https://anchore.com/slack" target="_blank"><img alt="Slack" src="https://img.shields.io/badge/Slack-Join-blue?logo=slack"></a>&nbsp;
+ &nbsp;<a href="https://anchore.com/discourse" target="_blank"><img alt="Join our Discourse" src="https://img.shields.io/badge/Discourse-Join-blue?logo=discourse"/></a>&nbsp;
+ &nbsp;<a rel="me" href="https://fosstodon.org/@syft"><img alt="Follow on Mastodon" src="https://img.shields.io/badge/Mastodon-Follow-blue?logoColor=white&logo=mastodon"/></a>&nbsp;
 </p>
 
 ![syft-demo](https://user-images.githubusercontent.com/590471/90277200-2a253000-de33-11ea-893f-32c219eea11a.gif)

RELEASE.md

@@ -1,5 +1,16 @@
 # Release
 
+A release of syft comprises:
+- a new semver git tag from the current tip of the main branch
+- a new [github release](https://github.com/anchore/syft/releases) with a changelog and archived binary assets
+- docker images published to `ghcr.io` and `dockerhub`, including multi architecture images + manifest
+- [`anchore/homebrew-syft`](https://github.com/anchore/homebrew-syft) tap updated to point to assets in the latest github release
+
+Ideally releasing should be done often with small increments when possible. Unless a
+breaking change is blocking the release, or no fixes/features have been merged, a good
+target release cadence is between every 1 or 2 weeks.
+
+
 ## Creating a release
 
 This release process itself should be as automated as possible, and has only a few steps:
@@ -9,16 +20,10 @@ This release process itself should be as automated as possible, and has only a f
   you can abort and adjust the labels on the PRs and issues to be included in the release and
   re-run the release trigger command.
 
-1. A release admin must approve the release on the GitHub Actions release pipeline run page.
+1. A release admin must approve the release on the GitHub Actions [release pipeline](https://github.com/anchore/syft/actions/workflows/release.yaml) run page.
    Once approved, the release pipeline will generate all assets and publish a GitHub Release.
 
-1. If there is a release Milestone, close it.
-
-Ideally releasing should be done often with small increments when possible. Unless a
-breaking change is blocking the release, or no fixes/features have been merged, a good
-target release cadence is between every 1 or 2 weeks.
-
-
+   
 ## Retracting a release
 
 If a release is found to be problematic, it can be retracted with the following steps:
@@ -32,81 +37,3 @@ If a release is found to be problematic, it can be retracted with the following
 in the go proxy, which will cause confusion when trying to reuse the tag later (the H1 hash will not match and there
 will be a warning when users try to pull the new release).
 
-
-## Background
-
-A good release process has the following qualities:
-
-1. There is a way to plan what should be in a release
-1. There is a way to see what is actually in a release
-1. Allow for different kinds of releases (major breaking vs backwards compatible enhancements vs patch updates)
-1. Specify a repeatable way to build and publish software artifacts
-
-
-### Planning a release
-
-To indicate a set of features to be released together add each issue to an in-repository
-Milestone named with major-minor version to be released (e.g. `v0.1`). It is OK for other
-features to be in the release that were not originally planned, and these issues and PRs
-do not need to be added to the Milestone in question. Only the set of features that, when
-completed, would allow the release to be considered complete. A Milestone is only used to:
-
-- Plan what is desired to be in a release
-- Track progress to indicate when we may be ready to cut a new release
-
-Not all releases need to be planned. For instance, patch releases for fixes should be
-released when they are ready and when releasing would not interfere with another current
-release (where some partial or breaking features have already been merged).
-
-Unless necessary, feature releases should be small and frequent, which may obviate the
-need for regular release planning under a Milestone.
-
-
-### What is in a release
-
-Milestones are specifically for planning a release, not necessarily tracking all changes
-that a release may bring (and more importantly, not all releases are necessarily planned
-either).
-
-This is one of the (many) reasons for a Changelog. A good Changelog lists changes grouped
-by the type of change (new, enhancement, deprecation, breaking, bug fix, security fix), in
-chronological order (within groups), linking the PR where the change was made in the
-Changelog line. Furthermore, there should be a place to see all released versions, the
-release date for each release, the semantic version of the release, and the set of changes
-for each release.
-
-**This project auto-generates the Changelog contents for each current release and posts the
-generated contents to the GitHub Release page**. Leveraging the GitHub Releases feature
-allows GitHub to manage the Changelog on each release outside of the git source tree while
-still being hosted with the released assets.
-
-The Changelog is generated from the metadata from in-repository issues and PRs, using
-labels to guide what kind of change each item is (e.g. breaking, new feature, bug fix,
-etx). Only issues/PRs with select labels are included in the Changelog, and only if the
-issue/PR was created after the last release. Additional labels are used to exclude items
-from the Changelog.
-
-The above suggestions imply that we should:
-
-- Ensure there is a sufficient title for each PR and issue title to be included in the
-  Changelog
-- The appropriate label is applied to PRs and/or issues to drive specific change type
-  sections (deprecated, breaking, security, bug, etc)
-
-**With this approach as we cultivate good organization of PRs and issues we automatically
-get an equally good Changelog.**
-
-
-### Major, minor, and patch releases
-
-The latest version of the tool is the only supported version, which implies that multiple
-parallel release branches will not be a regular process (if ever). Multiple releases can
-be planned in parallel, however, only one can be actively developed at a time. That is, if
-PRs attached to a release Milestone have been merged into the main branch, that release is
-now the "next" release. **This implies that the source of truth for release lies with the
-git log and Changelog, not with the release Milestones** (which are purely for planning and
-tracking).
-
-Semantic versioning should be used to indicate breaking changes, new features, and fixes.
-The exception to this is `< 1.0`, where the major version is not bumped for breaking changes,
-instead the minor version indicates both new features and breaking changes.

Taskfile.yaml

@@ -4,9 +4,19 @@ vars:
   OWNER: anchore
   PROJECT: syft
 
+  CACHE_IMAGE: ghcr.io/{{ .OWNER }}/{{ .PROJECT }}/test-fixture-cache:latest
+
   # static file dirs
   TOOL_DIR: .tool
   TMP_DIR: .tmp
+  ORAS_CACHE: "{{ .TMP_DIR }}/oras-cache"
+  CACHE_PATHS_FILE: "{{ .TMP_DIR }}/cache_paths.json"
+  LAST_CACHE_PULL_FILE: "{{ .TMP_DIR }}/last_cache_paths.json"
+
+  # TOOLS
+  ORAS: "{{ .TOOL_DIR }}/oras"
+  YQ: "{{ .TOOL_DIR }}/yq"
+  TASK: "{{ .TOOL_DIR }}/task"
 
   # used for changelog generation
   CHANGELOG: CHANGELOG.md
@@ -33,6 +43,9 @@ vars:
   COMPARE_DIR: ./test/compare
   COMPARE_TEST_IMAGE: centos:8.2.2004
 
+env:
+  GNUMAKEFLAGS: '--no-print-directory'
+
 tasks:
 
   ## High-level tasks #################################
@@ -65,6 +78,7 @@ tasks:
       - task: benchmark
       - task: test-utils
       - task: cli
+      - task: check-docker-cache
 
   ## Bootstrap tasks #################################
 
@@ -212,10 +226,6 @@ tasks:
     # that the cache being restored with the correct binary will be rebuilt since the timestamps
     # and local checksums will not line up.
     deps: [tools, snapshot]
-    sources:
-      - "{{ .SNAPSHOT_BIN }}"
-      - ./test/cli/**
-      - ./**/*.go
     cmds:
       - cmd: "echo 'testing binary: {{ .SNAPSHOT_BIN }}'"
         silent: true
@@ -229,18 +239,14 @@ tasks:
 
   test-utils:
     desc: Run tests for pipeline utils
-    sources:
-      - .github/scripts/labeler*.py
     cmds:
-      - cmd: python .github/scripts/labeler_test.py
+      - cmd: .github/scripts/labeler_test.py
 
 
   ## Benchmark test targets #################################
 
   benchmark:
     deps: [tmpdir]
-    sources:
-      - ./**/*.go
     generates:
       - "{{ .TMP_DIR }}/benchmark-main.txt"
     cmds:
@@ -253,8 +259,6 @@ tasks:
 
   show-benchstat:
     deps: [benchmark, tmpdir]
-    sources:
-      - "{{ .TMP_DIR }}/benchstat.txt"
     cmds:
       - cmd: "cat {{ .TMP_DIR }}/benchstat.txt"
         silent: true
@@ -263,56 +267,188 @@ tasks:
   ## Test-fixture-related targets #################################
 
   fingerprints:
-    desc: Generate test fixture fingerprints
+    desc: Generate fingerprints for all non-docker test fixture
+    silent: true
+    # this will look for `test-fixtures/Makefile` and invoke the `fingerprint` target to calculate all cache input fingerprint files
     generates:
-      - cmd/syft/internal/test/integration/test-fixtures/cache.fingerprint
-      - syft/file/cataloger/executable/test-fixtures/elf/cache.fingerprint
-      - syft/file/cataloger/executable/test-fixtures/shared-info/cache.fingerprint
-      - syft/pkg/cataloger/binary/test-fixtures/cache.fingerprint
-      - syft/pkg/cataloger/java/test-fixtures/java-builds/cache.fingerprint
-      - syft/pkg/cataloger/golang/test-fixtures/archs/binaries.fingerprint
-      - syft/pkg/cataloger/redhat/test-fixtures/rpms.fingerprint
-      - syft/pkg/cataloger/kernel/test-fixtures/cache.fingerprint
+      - '**/test-fixtures/**/*.fingerprint'
       - test/install/cache.fingerprint
-      - test/cli/test-fixtures/cache.fingerprint
     cmds:
-      # for EXECUTABLE unit test fixtures
-      - "cd syft/file/cataloger/executable/test-fixtures/elf && make cache.fingerprint"
-      - "cd syft/file/cataloger/executable/test-fixtures/shared-info && make cache.fingerprint"
-      # for IMAGE integration test fixtures
-      - "cd cmd/syft/internal/test/integration/test-fixtures && make cache.fingerprint"
-      # for BINARY unit test fixtures
-      - "cd syft/pkg/cataloger/binary/test-fixtures && make cache.fingerprint"
-      # for JAVA BUILD unit test fixtures
-      - "cd syft/pkg/cataloger/java/test-fixtures/java-builds && make cache.fingerprint"
-      # for GO BINARY unit test fixtures
-      - "cd syft/pkg/cataloger/golang/test-fixtures/archs && make binaries.fingerprint"
-      # for RPM unit test fixtures
-      - "cd syft/pkg/cataloger/redhat/test-fixtures && make rpms.fingerprint"
-      # for Kernel unit test fixtures
-      - "cd syft/pkg/cataloger/kernel/test-fixtures && make cache.fingerprint"
-      # for INSTALL test fixtures
-      - "cd test/install && make cache.fingerprint"
-      # for CLI test fixtures
-      - "cd test/cli/test-fixtures && make cache.fingerprint"
+      - |
+        BOLD='\033[1m'
+        YELLOW='\033[0;33m'
+        RESET='\033[0m'
 
-  fixtures:
-    desc: Generate test fixtures
+        echo -e "${YELLOW}creating fingerprint files for non-docker fixtures...${RESET}"        
+        for dir in $(find . -type d -name 'test-fixtures'); do
+          if [ -f "$dir/Makefile" ]; then
+            # for debugging...
+            #echo -e "${YELLOW}• calculating fingerprints in $dir... ${RESET}"
+            
+            (make -C "$dir" fingerprint)
+          fi
+        done
+
+        # for debugging...
+        # echo -e "generated all fixture fingerprints"
+
+      - .github/scripts/fingerprint_docker_fixtures.py
+      - |
+        # if DOWNLOAD_TEST_FIXTURE_CACHE is set to 'false', then we don't need to calculate the fingerprint for the cache
+        if [ "$DOWNLOAD_TEST_FIXTURE_CACHE" = "false" ]; then
+          exit 0
+        fi
+        .github/scripts/find_cache_paths.py {{ .CACHE_PATHS_FILE }} > /dev/null
+
+
+  refresh-fixtures:
+    desc: Clear and fetch all test fixture cache
+    aliases:
+      - fixtures
+    silent: true
+    deps:
+      - tools
     cmds:
-      - "cd syft/file/cataloger/executable/test-fixtures/elf && make"
-      - "cd syft/file/cataloger/executable/test-fixtures/shared-info && make"
-      - "cd syft/pkg/cataloger/java/test-fixtures/java-builds && make"
-      - "cd syft/pkg/cataloger/redhat/test-fixtures && make"
-      - "cd syft/pkg/cataloger/binary/test-fixtures && make"
+      - |
+        BOLD='\033[1m'
+        PURPLE='\033[0;35m'
+        RESET='\033[0m'
+        
+        # if DOWNLOAD_TEST_FIXTURE_CACHE is set to 'false', then skip the cache download and always build
+        if [ "$DOWNLOAD_TEST_FIXTURE_CACHE" = "false" ]; then
+            echo -e "${BOLD}${PURPLE}skipping cache download, rebuilding cache...${RESET}"
+            {{ .TASK }} build-fixtures
+            exit 0
+        fi
+        
+        LATEST_FINGERPRINT=$(docker manifest inspect {{ .CACHE_IMAGE }} | {{ .YQ }} -r '.annotations.fingerprint')
+
+        echo "latest cache:      $LATEST_FINGERPRINT"
+        
+        if [ -f {{ .LAST_CACHE_PULL_FILE }} ]; then
+          LAST_PULL_FINGERPRINT=$(cat {{ .LAST_CACHE_PULL_FILE }} | {{ .YQ }} -r '.digest')
+        else
+          echo -e "${BOLD}${PURPLE}empty cache, downloading cache...${RESET}"
+          {{ .TASK }} download-test-fixture-cache
+          exit 0
+        fi
+        
+        {{ .TASK }} fingerprints
+
+        WANT_FINGERPRINT=$(cat {{ .CACHE_PATHS_FILE }} | {{ .YQ }} -r '.digest')        
+
+        echo "desired cache:     $WANT_FINGERPRINT"
+        echo "last pulled cache: $LAST_PULL_FINGERPRINT"
+  
+        # if we already have the latest cache, skip the refresh
+        if [ "$LAST_PULL_FINGERPRINT" = "$WANT_FINGERPRINT" ]; then
+            echo -e "${BOLD}${PURPLE}already have the latest cache (skipping cache download)${RESET}"
+            exit 0
+        fi
+  
+        # at this point we only refresh the cache if we want the same cache that is currently available.
+        # we don't by default refresh the cache if the cache if it is simply different from what we have,
+        # because we may be working on a code change that doesn't require a cache refresh (but could trigger one,
+        # which would be annoying to deal with in a development workflow).
+  
+        if [ "$LATEST_FINGERPRINT" = "$WANT_FINGERPRINT" ]; then
+          echo -e "${BOLD}${PURPLE}found newer cache! downloading cache...${RESET}"
+          {{ .TASK }} download-test-fixture-cache
+        else
+          echo -e "${BOLD}${PURPLE}found different cache, but isn't clear if it's newer (skipping cache download and manually building)${RESET}"
+        
+          {{ .YQ }} eval '.paths[] | "\(.digest) \(.path)"' {{ .LAST_CACHE_PULL_FILE }} > .tmp/last_cache_lines
+          {{ .YQ }} eval '.paths[] | "\(.digest) \(.path)"' {{ .CACHE_PATHS_FILE }} > .tmp/cache_lines
+          diff .tmp/last_cache_lines .tmp/cache_lines || true
+        
+          echo -e "${BOLD}${PURPLE}diff with more context...${RESET}"
+        
+          diff -U10000 {{ .LAST_CACHE_PULL_FILE }} {{ .CACHE_PATHS_FILE }} || true
+        
+          echo -e "${BOLD}${PURPLE}detected changes to input material, manually building fixtures...${RESET}"
+        
+          {{ .TASK }} build-fixtures
+        fi
+
+  build-fixtures:
+    desc: Generate all non-docker test fixtures
+    silent: true
+    # this will look for `test-fixtures/Makefile` and invoke the `fixtures` target to generate any and all test fixtures
+    cmds:
+      - |
+        BOLD='\033[1m'
+        YELLOW='\033[0;33m'
+        RESET='\033[0m'
+        
+        # Use a for loop with command substitution to avoid subshell issues
+        for dir in $(find . -type d -name 'test-fixtures'); do
+          if [ -f "$dir/Makefile" ]; then
+            echo -e "${YELLOW}${BOLD}generating fixtures in $dir${RESET}"
+            (make -C "$dir" fixtures)
+          fi
+        done
+        echo -e "${BOLD}generated all fixtures${RESET}"
+
+  download-test-fixture-cache:
+    desc: Download test fixture cache from ghcr.io
+    deps: [tools, clean-cache]
+    vars:
+      CACHE_DIGEST:
+        sh: docker manifest inspect {{ .CACHE_IMAGE }} | {{ .YQ }} -r '.annotations.fingerprint'
+    cmds:
+      - silent: true
+        cmd: |
+          # if oras cache is > 4 GB, delete it
+          if [ -d {{ .ORAS_CACHE }} ]; then
+            total_size=$(du -c {{ .ORAS_CACHE }} | grep total | awk '{print $1}')
+            if [ "$total_size" -gt 4194304 ]; then
+              echo 'deleting oras cache'
+              rm -rf {{ .ORAS_CACHE }}
+            fi
+          fi
+      - "ORAS_CACHE={{ .ORAS_CACHE }} {{ .ORAS }} pull {{ .CACHE_IMAGE }}"
+      - "cp {{ .CACHE_PATHS_FILE }} {{ .LAST_CACHE_PULL_FILE }}"
+
+  upload-test-fixture-cache:
+    desc: Upload the test fixture cache to ghcr.io
+    deps: [tools, fingerprints]
+    silent: true
+    cmd: |
+      set -eu
+      oras_command="{{ .ORAS }} push {{ .CACHE_IMAGE }}"
+
+      paths=$(cat {{ .CACHE_PATHS_FILE }} | {{ .YQ }} -r '.paths[].path')      
+      for path in $paths; do
+        oras_command+=" $path"
+      done
+      oras_command+=" {{ .CACHE_PATHS_FILE }}"
+      
+      oras_command+=" --annotation org.opencontainers.image.source=https://github.com/{{ .OWNER }}/{{ .PROJECT }}"
+      oras_command+=" --annotation fingerprint=$(cat {{ .CACHE_PATHS_FILE }} | {{ .YQ }} -r '.digest')"
+    
+      echo "Executing: $oras_command"
+      eval $oras_command
 
   show-test-image-cache:
     silent: true
     cmds:
-      - "echo '\nDocker daemon cache:'"
+      - "echo 'Docker daemon cache:'"
       - "docker images --format '{{`{{.ID}}`}} {{`{{.Repository}}`}}:{{`{{.Tag}}`}}' | grep stereoscope-fixture- | sort"
       - "echo '\nTar cache:'"
-      - 'find . -type f -wholename "**/test-fixtures/snapshot/*" | sort'
+      - 'find . -type f -wholename "**/test-fixtures/cache/stereoscope-fixture-*.tar" | sort'
 
+  check-docker-cache:
+    desc: Ensure docker caches aren't using too much disk space
+    silent: true
+    cmd: |
+      total_size=$(find . | grep cache | grep tar | xargs du -c | grep total | awk '{print $1}')
+      find . | grep cache | grep tar | xargs du
+      echo "total $total_size KB"
+      
+      if [ "$total_size" -gt 1048576 ]; then
+        echo 'docker cache is larger than 1GB'
+        exit 1
+      fi
 
   ## install.sh testing targets #################################
 
@@ -489,8 +625,31 @@ tasks:
       - "rm -rf {{ .SNAPSHOT_DIR }}"
       - "rm -rf {{ .TMP_DIR }}/goreleaser.yaml"
 
-  clean-cache:
-    desc: Remove all docker cache and local image tar cache
+  clean-docker-cache:
+    desc: Remove all docker cache tars and images from the daemon
     cmds:
-      - 'find . -type f -wholename "**/test-fixtures/cache/stereoscope-fixture-*.tar" -delete'
-      - "docker images --format '{{`{{.ID}}`}} {{`{{.Repository}}`}}' | grep stereoscope-fixture- | awk '{print $$1}' | uniq | xargs -r docker rmi --force"
+      - find . -type d -wholename "**/test-fixtures/cache" | xargs rm -rf
+      - docker images --format '{{`{{.ID}}`}} {{`{{.Repository}}`}}' | grep stereoscope-fixture- | awk '{print $1}' | uniq | xargs -r docker rmi --force
+
+  clean-oras-cache:
+    desc: Remove all cache for oras commands
+    cmd: rm -rf {{ .ORAS_CACHE }}
+
+  clean-cache:
+    desc: Remove all image docker tar cache, images from the docker daemon, and ephemeral test fixtures
+    cmds:
+      - task: clean-docker-cache
+      - |
+        BOLD='\033[1m'
+        YELLOW='\033[0;33m'
+        RESET='\033[0m'
+        
+        # Use a for loop with command substitution to avoid subshell issues
+        for dir in $(find . -type d -name 'test-fixtures'); do
+        if [ -f "$dir/Makefile" ]; then
+          echo -e "${YELLOW}${BOLD}deleting ephemeral test fixtures in $dir${RESET}"
+          (make -C "$dir" clean)
+        fi
+        done
+        echo -e "${BOLD}Deleted all ephemeral test fixtures${RESET}"
+      - rm -f {{ .LAST_CACHE_PULL_FILE }} {{ .CACHE_PATHS_FILE }}

cmd/syft/internal/clio_setup_config.go

@@ -20,18 +20,18 @@ func AppClioSetupConfig(id clio.Identification, out io.Writer) *clio.SetupConfig
 		WithConfigInRootHelp().   // --help on the root command renders the full application config in the help text
 		WithUIConstructor(
 			// select a UI based on the logging configuration and state of stdin (if stdin is a tty)
-			func(cfg clio.Config) ([]clio.UI, error) {
+			func(cfg clio.Config) (*clio.UICollection, error) {
 				noUI := ui.None(out, cfg.Log.Quiet)
 				if !cfg.Log.AllowUI(os.Stdin) || cfg.Log.Quiet {
-					return []clio.UI{noUI}, nil
+					return clio.NewUICollection(noUI), nil
 				}
 
-				return []clio.UI{
+				return clio.NewUICollection(
 					ui.New(out, cfg.Log.Quiet,
 						ui2.New(ui2.DefaultHandlerConfig()),
 					),
 					noUI,
-				}, nil
+				), nil
 			},
 		).
 		WithInitializers(

cmd/syft/internal/commands/attest.go

@@ -93,14 +93,13 @@ func defaultAttestOutputOptions() options.Output {
 			string(spdxtagvalue.ID),
 		},
 		Outputs: []string{syftjson.ID.String()},
-		OutputFile: options.OutputFile{ // nolint:staticcheck
+		OutputFile: options.OutputFile{ //nolint:staticcheck
 			Enabled: false, // explicitly not allowed
 		},
 		Format: options.DefaultFormat(),
 	}
 }
 
-//nolint:funlen
 func runAttest(ctx context.Context, id clio.Identification, opts *attestOptions, userInput string) error {
 	// TODO: what other validation here besides binary name?
 	if !commandExists(cosignBinName) {

cmd/syft/internal/commands/convert.go

@@ -28,7 +28,6 @@ type ConvertOptions struct {
 	options.UpdateCheck `yaml:",inline" mapstructure:",squash"`
 }
 
-//nolint:dupl
 func Convert(app clio.Application) *cobra.Command {
 	id := app.ID()
 

cmd/syft/internal/commands/scan.go

@@ -13,6 +13,7 @@ import (
 	"gopkg.in/yaml.v3"
 
 	"github.com/anchore/clio"
+	"github.com/anchore/fangs"
 	"github.com/anchore/go-collections"
 	"github.com/anchore/stereoscope"
 	"github.com/anchore/stereoscope/pkg/image"
@@ -80,7 +81,6 @@ func defaultScanOptions() *scanOptions {
 	}
 }
 
-//nolint:dupl
 func Scan(app clio.Application) *cobra.Command {
 	id := app.ID()
 
@@ -110,7 +110,7 @@ func (o *scanOptions) PostLoad() error {
 }
 
 func (o *scanOptions) validateLegacyOptionsNotUsed() error {
-	if o.Config.ConfigFile == "" {
+	if len(fangs.Flatten(o.Config.ConfigFile)) == 0 {
 		return nil
 	}
 
@@ -122,32 +122,33 @@ func (o *scanOptions) validateLegacyOptionsNotUsed() error {
 		File                            any     `yaml:"file" json:"file" mapstructure:"file"`
 	}
 
-	by, err := os.ReadFile(o.Config.ConfigFile)
-	if err != nil {
-		return fmt.Errorf("unable to read config file during validations %q: %w", o.Config.ConfigFile, err)
-	}
+	for _, f := range fangs.Flatten(o.Config.ConfigFile) {
+		by, err := os.ReadFile(f)
+		if err != nil {
+			return fmt.Errorf("unable to read config file during validations %q: %w", f, err)
+		}
 
-	var legacy legacyConfig
-	if err := yaml.Unmarshal(by, &legacy); err != nil {
-		return fmt.Errorf("unable to parse config file during validations %q: %w", o.Config.ConfigFile, err)
-	}
+		var legacy legacyConfig
+		if err := yaml.Unmarshal(by, &legacy); err != nil {
+			return fmt.Errorf("unable to parse config file during validations %q: %w", f, err)
+		}
 
-	if legacy.DefaultImagePullSource != nil {
-		return fmt.Errorf("the config file option 'default-image-pull-source' has been removed, please use 'source.image.default-pull-source' instead")
-	}
+		if legacy.DefaultImagePullSource != nil {
+			return fmt.Errorf("the config file option 'default-image-pull-source' has been removed, please use 'source.image.default-pull-source' instead")
+		}
 
-	if legacy.ExcludeBinaryOverlapByOwnership != nil {
-		return fmt.Errorf("the config file option 'exclude-binary-overlap-by-ownership' has been removed, please use 'package.exclude-binary-overlap-by-ownership' instead")
-	}
+		if legacy.ExcludeBinaryOverlapByOwnership != nil {
+			return fmt.Errorf("the config file option 'exclude-binary-overlap-by-ownership' has been removed, please use 'package.exclude-binary-overlap-by-ownership' instead")
+		}
 
-	if legacy.BasePath != nil {
-		return fmt.Errorf("the config file option 'base-path' has been removed, please use 'source.base-path' instead")
-	}
+		if legacy.BasePath != nil {
+			return fmt.Errorf("the config file option 'base-path' has been removed, please use 'source.base-path' instead")
+		}
 
-	if legacy.File != nil && reflect.TypeOf(legacy.File).Kind() == reflect.String {
-		return fmt.Errorf("the config file option 'file' has been removed, please use 'outputs' instead")
+		if legacy.File != nil && reflect.TypeOf(legacy.File).Kind() == reflect.String {
+			return fmt.Errorf("the config file option 'file' has been removed, please use 'outputs' instead")
+		}
 	}
-
 	return nil
 }
 
@@ -161,7 +162,7 @@ func validateArgs(cmd *cobra.Command, args []string, error string) error {
 		if err := cmd.Help(); err != nil {
 			return fmt.Errorf("unable to display help: %w", err)
 		}
-		return fmt.Errorf(error)
+		return fmt.Errorf("%v", error)
 	}
 
 	return cobra.MaximumNArgs(1)(cmd, args)
@@ -396,13 +397,13 @@ func getExplanation(expErr task.ErrInvalidExpression) string {
 
 	if errors.Is(err, task.ErrNamesNotAllowed) {
 		if expErr.Operation == task.SubSelectOperation {
-			return "However, " + err.Error() + ".\nIt seems like you are intending to add a cataloger in addition to the default set." // nolint:goconst
+			return "However, " + err.Error() + ".\nIt seems like you are intending to add a cataloger in addition to the default set."
 		}
-		return "However, " + err.Error() + "." // nolint:goconst
+		return "However, " + err.Error() + "."
 	}
 
 	if errors.Is(err, task.ErrTagsNotAllowed) {
-		return "However, " + err.Error() + ".\nAdding groups of catalogers may result in surprising behavior (create inaccurate SBOMs)." // nolint:goconst
+		return "However, " + err.Error() + ".\nAdding groups of catalogers may result in surprising behavior (create inaccurate SBOMs)."
 	}
 
 	if errors.Is(err, task.ErrAllNotAllowed) {

cmd/syft/internal/options/catalog.go

@@ -11,6 +11,7 @@ import (
 	"github.com/anchore/fangs"
 	intFile "github.com/anchore/syft/internal/file"
 	"github.com/anchore/syft/internal/log"
+	"github.com/anchore/syft/internal/task"
 	"github.com/anchore/syft/syft"
 	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/cataloging/filecataloging"
@@ -36,6 +37,8 @@ type Catalog struct {
 	Scope             string              `yaml:"scope" json:"scope" mapstructure:"scope"`
 	Parallelism       int                 `yaml:"parallelism" json:"parallelism" mapstructure:"parallelism"` // the number of catalog workers to run in parallel
 	Relationships     relationshipsConfig `yaml:"relationships" json:"relationships" mapstructure:"relationships"`
+	Compliance        complianceConfig    `yaml:"compliance" json:"compliance" mapstructure:"compliance"`
+	Enrich            []string            `yaml:"enrich" json:"enrich" mapstructure:"enrich"`
 
 	// ecosystem-specific cataloger configuration
 	Golang      golangConfig      `yaml:"golang" json:"golang" mapstructure:"golang"`
@@ -50,16 +53,20 @@ type Catalog struct {
 	Platform   string         `yaml:"platform" json:"platform" mapstructure:"platform"`
 	Source     sourceConfig   `yaml:"source" json:"source" mapstructure:"source"`
 	Exclusions []string       `yaml:"exclude" json:"exclude" mapstructure:"exclude"`
+
+	// configuration for inclusion of unknown information within elements
+	Unknowns unknownsConfig `yaml:"unknowns" mapstructure:"unknowns"`
 }
 
 var _ interface {
 	clio.FlagAdder
 	clio.PostLoader
-	fangs.FieldDescriber
+	clio.FieldDescriber
 } = (*Catalog)(nil)
 
 func DefaultCatalog() Catalog {
 	return Catalog{
+		Compliance:    defaultComplianceConfig(),
 		Scope:         source.SquashedScope.String(),
 		Package:       defaultPackageConfig(),
 		LinuxKernel:   defaultLinuxKernelConfig(),
@@ -67,6 +74,7 @@ func DefaultCatalog() Catalog {
 		Java:          defaultJavaConfig(),
 		File:          defaultFileConfig(),
 		Relationships: defaultRelationshipsConfig(),
+		Unknowns:      defaultUnknowns(),
 		Source:        defaultSourceConfig(),
 		Parallelism:   1,
 	}
@@ -77,6 +85,8 @@ func (cfg Catalog) ToSBOMConfig(id clio.Identification) *syft.CreateSBOMConfig {
 		WithTool(id.Name, id.Version).
 		WithParallelism(cfg.Parallelism).
 		WithRelationshipsConfig(cfg.ToRelationshipsConfig()).
+		WithComplianceConfig(cfg.ToComplianceConfig()).
+		WithUnknownsConfig(cfg.ToUnknownsConfig()).
 		WithSearchConfig(cfg.ToSearchConfig()).
 		WithPackagesConfig(cfg.ToPackagesConfig()).
 		WithFilesConfig(cfg.ToFilesConfig()).
@@ -102,6 +112,20 @@ func (cfg Catalog) ToRelationshipsConfig() cataloging.RelationshipsConfig {
 	}
 }
 
+func (cfg Catalog) ToComplianceConfig() cataloging.ComplianceConfig {
+	return cataloging.ComplianceConfig{
+		MissingName:    cfg.Compliance.MissingName,
+		MissingVersion: cfg.Compliance.MissingVersion,
+	}
+}
+
+func (cfg Catalog) ToUnknownsConfig() cataloging.UnknownsConfig {
+	return cataloging.UnknownsConfig{
+		IncludeExecutablesWithoutPackages: cfg.Unknowns.ExecutablesWithoutPackages,
+		IncludeUnexpandedArchives:         cfg.Unknowns.UnexpandedArchives,
+	}
+}
+
 func (cfg Catalog) ToFilesConfig() filecataloging.Config {
 	hashers, err := intFile.Hashers(cfg.File.Metadata.Digests...)
 	if err != nil {
@@ -130,9 +154,9 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 	return pkgcataloging.Config{
 		Binary: binary.DefaultClassifierCatalogerConfig(),
 		Golang: golang.DefaultCatalogerConfig().
-			WithSearchLocalModCacheLicenses(cfg.Golang.SearchLocalModCacheLicenses).
+			WithSearchLocalModCacheLicenses(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Go, task.Golang), cfg.Golang.SearchLocalModCacheLicenses)).
 			WithLocalModCacheDir(cfg.Golang.LocalModCacheDir).
-			WithSearchRemoteLicenses(cfg.Golang.SearchRemoteLicenses).
+			WithSearchRemoteLicenses(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Go, task.Golang), cfg.Golang.SearchRemoteLicenses)).
 			WithProxy(cfg.Golang.Proxy).
 			WithNoProxy(cfg.Golang.NoProxy).
 			WithMainModuleVersion(
@@ -142,7 +166,7 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 					WithFromLDFlags(cfg.Golang.MainModuleVersion.FromLDFlags),
 			),
 		JavaScript: javascript.DefaultCatalogerConfig().
-			WithSearchRemoteLicenses(cfg.JavaScript.SearchRemoteLicenses).
+			WithSearchRemoteLicenses(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.JavaScript, task.Node, task.NPM), cfg.JavaScript.SearchRemoteLicenses)).
 			WithNpmBaseURL(cfg.JavaScript.NpmBaseURL),
 		LinuxKernel: kernel.LinuxKernelCatalogerConfig{
 			CatalogModules: cfg.LinuxKernel.CatalogModules,
@@ -151,11 +175,12 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 			GuessUnpinnedRequirements: cfg.Python.GuessUnpinnedRequirements,
 		},
 		JavaArchive: java.DefaultArchiveCatalogerConfig().
-			WithUseMavenLocalRepository(cfg.Java.UseMavenLocalRepository).
+			WithUseMavenLocalRepository(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Java, task.Maven), cfg.Java.UseMavenLocalRepository)).
 			WithMavenLocalRepositoryDir(cfg.Java.MavenLocalRepositoryDir).
-			WithUseNetwork(cfg.Java.UseNetwork).
+			WithUseNetwork(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Java, task.Maven), cfg.Java.UseNetwork)).
 			WithMavenBaseURL(cfg.Java.MavenURL).
-			WithArchiveTraversal(archiveSearch, cfg.Java.MaxParentRecursiveDepth),
+			WithArchiveTraversal(archiveSearch, cfg.Java.MaxParentRecursiveDepth).
+			WithResolveTransitiveDependencies(cfg.Java.ResolveTransitiveDependencies),
 	}
 }
 
@@ -193,6 +218,9 @@ func (cfg *Catalog) AddFlags(flags clio.FlagSet) {
 	flags.StringArrayVarP(&cfg.SelectCatalogers, "select-catalogers", "",
 		"add, remove, and filter the catalogers to be used")
 
+	flags.StringArrayVarP(&cfg.Enrich, "enrich", "",
+		fmt.Sprintf("enable package data enrichment from local and online sources (options: %s)", strings.Join(publicisedEnrichmentOptions, ", ")))
+
 	flags.StringVarP(&cfg.Source.Name, "source-name", "",
 		"set the name of the target being analyzed")
 
@@ -205,6 +233,10 @@ func (cfg *Catalog) AddFlags(flags clio.FlagSet) {
 
 func (cfg *Catalog) DescribeFields(descriptions fangs.FieldDescriptionSet) {
 	descriptions.Add(&cfg.Parallelism, "number of cataloger workers to run in parallel")
+
+	descriptions.Add(&cfg.Enrich, fmt.Sprintf(`Enable data enrichment operations, which can utilize services such as Maven Central and NPM.
+By default all enrichment is disabled, use: all to enable everything.
+Available options are: %s`, strings.Join(publicisedEnrichmentOptions, ", ")))
 }
 
 func (cfg *Catalog) PostLoad() error {
@@ -215,23 +247,12 @@ func (cfg *Catalog) PostLoad() error {
 		return fmt.Errorf("cannot use both 'catalogers' and 'select-catalogers'/'default-catalogers' flags")
 	}
 
-	flatten := func(l []string) []string {
-		var out []string
-		for _, v := range l {
-			for _, s := range strings.Split(v, ",") {
-				out = append(out, strings.TrimSpace(s))
-			}
-		}
-		sort.Strings(out)
-
-		return out
-	}
-
 	cfg.From = flatten(cfg.From)
 
 	cfg.Catalogers = flatten(cfg.Catalogers)
 	cfg.DefaultCatalogers = flatten(cfg.DefaultCatalogers)
 	cfg.SelectCatalogers = flatten(cfg.SelectCatalogers)
+	cfg.Enrich = flatten(cfg.Enrich)
 
 	// for backwards compatibility
 	cfg.DefaultCatalogers = append(cfg.DefaultCatalogers, cfg.Catalogers...)
@@ -241,5 +262,75 @@ func (cfg *Catalog) PostLoad() error {
 		return fmt.Errorf("bad scope value %q", cfg.Scope)
 	}
 
+	// the binary package exclusion code depends on the file overlap relationships being created upstream in processing
+	if !cfg.Relationships.PackageFileOwnershipOverlap && cfg.Package.ExcludeBinaryOverlapByOwnership {
+		return fmt.Errorf("cannot enable exclude-binary-overlap-by-ownership without enabling package-file-ownership-overlap")
+	}
+
 	return nil
 }
+
+func flatten(commaSeparatedEntries []string) []string {
+	var out []string
+	for _, v := range commaSeparatedEntries {
+		for _, s := range strings.Split(v, ",") {
+			out = append(out, strings.TrimSpace(s))
+		}
+	}
+	sort.Strings(out)
+	return out
+}
+
+var publicisedEnrichmentOptions = []string{
+	"all",
+	task.Golang,
+	task.Java,
+	task.JavaScript,
+}
+
+func enrichmentEnabled(enrichDirectives []string, features ...string) *bool {
+	if len(enrichDirectives) == 0 {
+		return nil
+	}
+
+	enabled := func(features ...string) *bool {
+		for _, directive := range enrichDirectives {
+			enable := true
+			directive = strings.TrimPrefix(directive, "+") // +java and java are equivalent
+			if strings.HasPrefix(directive, "-") {
+				directive = directive[1:]
+				enable = false
+			}
+			for _, feature := range features {
+				if directive == feature {
+					return &enable
+				}
+			}
+		}
+		return nil
+	}
+
+	enableAll := enabled("all")
+	disableAll := enabled("none")
+
+	if disableAll != nil && *disableAll {
+		if enableAll != nil {
+			log.Warn("you have specified to both enable and disable all enrichment functionality, defaulting to disabled")
+		}
+		enableAll = ptr(false)
+	}
+
+	// check for explicit enable/disable of feature names
+	for _, feat := range features {
+		enableFeature := enabled(feat)
+		if enableFeature != nil {
+			return enableFeature
+		}
+	}
+
+	return enableAll
+}
+
+func ptr[T any](val T) *T {
+	return &val
+}

cmd/syft/internal/options/catalog_test.go

@@ -57,6 +57,14 @@ func TestCatalog_PostLoad(t *testing.T) {
 				assert.Empty(t, options.Catalogers)
 			},
 		},
+		{
+			name: "must have package overlap flag when pruning binaries by overlap",
+			options: Catalog{
+				Package:       packageConfig{ExcludeBinaryOverlapByOwnership: true},
+				Relationships: relationshipsConfig{PackageFileOwnershipOverlap: false},
+			},
+			wantErr: assert.Error,
+		},
 	}
 	for _, tt := range tests {
 		t.Run(tt.name, func(t *testing.T) {
@@ -70,3 +78,69 @@ func TestCatalog_PostLoad(t *testing.T) {
 		})
 	}
 }
+
+func Test_enrichmentEnabled(t *testing.T) {
+	tests := []struct {
+		directives string
+		test       string
+		expected   *bool
+	}{
+		{
+			directives: "",
+			test:       "java",
+			expected:   nil,
+		},
+		{
+			directives: "none",
+			test:       "java",
+			expected:   ptr(false),
+		},
+		{
+			directives: "none,+java",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "all,none",
+			test:       "java",
+			expected:   ptr(false),
+		},
+		{
+			directives: "all",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "golang,js",
+			test:       "java",
+			expected:   nil,
+		},
+		{
+			directives: "golang,-js,java",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "golang,js,-java",
+			test:       "java",
+			expected:   ptr(false),
+		},
+		{
+			directives: "all",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "all,-java",
+			test:       "java",
+			expected:   ptr(false),
+		},
+	}
+
+	for _, test := range tests {
+		t.Run(test.directives, func(t *testing.T) {
+			got := enrichmentEnabled(flatten([]string{test.directives}), test.test)
+			assert.Equal(t, test.expected, got)
+		})
+	}
+}

cmd/syft/internal/options/compliance.go

@@ -0,0 +1,35 @@
+package options
+
+import (
+	"github.com/anchore/fangs"
+	"github.com/anchore/syft/syft/cataloging"
+)
+
+var (
+	_ fangs.FieldDescriber = (*complianceConfig)(nil)
+	_ fangs.PostLoader     = (*complianceConfig)(nil)
+)
+
+type complianceConfig struct {
+	MissingName    cataloging.ComplianceAction `mapstructure:"missing-name" json:"missing-name" yaml:"missing-name"`
+	MissingVersion cataloging.ComplianceAction `mapstructure:"missing-version" json:"missing-version" yaml:"missing-version"`
+}
+
+func defaultComplianceConfig() complianceConfig {
+	def := cataloging.DefaultComplianceConfig()
+	return complianceConfig{
+		MissingName:    def.MissingName,
+		MissingVersion: def.MissingVersion,
+	}
+}
+
+func (r *complianceConfig) DescribeFields(descriptions fangs.FieldDescriptionSet) {
+	descriptions.Add(&r.MissingName, "action to take when a package is missing a name")
+	descriptions.Add(&r.MissingVersion, "action to take when a package is missing a version")
+}
+
+func (r *complianceConfig) PostLoad() error {
+	r.MissingName = r.MissingName.Parse()
+	r.MissingVersion = r.MissingVersion.Parse()
+	return nil
+}

cmd/syft/internal/options/config.go

@@ -2,11 +2,11 @@ package options
 
 import "github.com/anchore/fangs"
 
-// Config holds a reference to the specific config file that was used to load application configuration
+// Config holds a reference to the specific config file(s) that were used to load application configuration
 type Config struct {
 	ConfigFile string `yaml:"config" json:"config" mapstructure:"config"`
 }
 
 func (cfg *Config) DescribeFields(descriptions fangs.FieldDescriptionSet) {
-	descriptions.Add(&cfg.ConfigFile, "the configuration file that was used to load application configuration")
+	descriptions.Add(&cfg.ConfigFile, "the configuration file(s) used to load application configuration")
 }

cmd/syft/internal/options/format.go

@@ -50,7 +50,7 @@ if false, uses the syft-json output for templating (which follows the syft JSON
 
 Note: long term support for this option is not guaranteed (it may change or break at any time)`)
 
-	prettyDescription := `include space indention and newlines
+	prettyDescription := `include space indentation and newlines
 note: inherits default value from 'format.pretty' or 'false' if parent is unset`
 	descriptions.Add(&o.SyftJSON.Pretty, prettyDescription)
 	descriptions.Add(&o.SPDXJSON.Pretty, prettyDescription)

cmd/syft/internal/options/golang.go

@@ -8,9 +8,9 @@ import (
 )
 
 type golangConfig struct {
-	SearchLocalModCacheLicenses bool                          `json:"search-local-mod-cache-licenses" yaml:"search-local-mod-cache-licenses" mapstructure:"search-local-mod-cache-licenses"`
+	SearchLocalModCacheLicenses *bool                         `json:"search-local-mod-cache-licenses" yaml:"search-local-mod-cache-licenses" mapstructure:"search-local-mod-cache-licenses"`
 	LocalModCacheDir            string                        `json:"local-mod-cache-dir" yaml:"local-mod-cache-dir" mapstructure:"local-mod-cache-dir"`
-	SearchRemoteLicenses        bool                          `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
+	SearchRemoteLicenses        *bool                         `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
 	Proxy                       string                        `json:"proxy" yaml:"proxy" mapstructure:"proxy"`
 	NoProxy                     string                        `json:"no-proxy" yaml:"no-proxy" mapstructure:"no-proxy"`
 	MainModuleVersion           golangMainModuleVersionConfig `json:"main-module-version" yaml:"main-module-version" mapstructure:"main-module-version"`
@@ -47,9 +47,9 @@ type golangMainModuleVersionConfig struct {
 func defaultGolangConfig() golangConfig {
 	def := golang.DefaultCatalogerConfig()
 	return golangConfig{
-		SearchLocalModCacheLicenses: def.SearchLocalModCacheLicenses,
+		SearchLocalModCacheLicenses: nil, // this defaults to false, which is the API default
 		LocalModCacheDir:            def.LocalModCacheDir,
-		SearchRemoteLicenses:        def.SearchRemoteLicenses,
+		SearchRemoteLicenses:        nil, // this defaults to false, which is the API default
 		Proxy:                       strings.Join(def.Proxies, ","),
 		NoProxy:                     strings.Join(def.NoProxy, ","),
 		MainModuleVersion: golangMainModuleVersionConfig{

cmd/syft/internal/options/java.go

@@ -6,22 +6,24 @@ import (
 )
 
 type javaConfig struct {
-	UseNetwork              bool   `yaml:"use-network" json:"use-network" mapstructure:"use-network"`
-	UseMavenLocalRepository bool   `yaml:"use-maven-local-repository" json:"use-maven-local-repository" mapstructure:"use-maven-local-repository"`
-	MavenLocalRepositoryDir string `yaml:"maven-local-repository-dir" json:"maven-local-repository-dir" mapstructure:"maven-local-repository-dir"`
-	MavenURL                string `yaml:"maven-url" json:"maven-url" mapstructure:"maven-url"`
-	MaxParentRecursiveDepth int    `yaml:"max-parent-recursive-depth" json:"max-parent-recursive-depth" mapstructure:"max-parent-recursive-depth"`
+	UseNetwork                    *bool  `yaml:"use-network" json:"use-network" mapstructure:"use-network"`
+	UseMavenLocalRepository       *bool  `yaml:"use-maven-local-repository" json:"use-maven-local-repository" mapstructure:"use-maven-local-repository"`
+	MavenLocalRepositoryDir       string `yaml:"maven-local-repository-dir" json:"maven-local-repository-dir" mapstructure:"maven-local-repository-dir"`
+	MavenURL                      string `yaml:"maven-url" json:"maven-url" mapstructure:"maven-url"`
+	MaxParentRecursiveDepth       int    `yaml:"max-parent-recursive-depth" json:"max-parent-recursive-depth" mapstructure:"max-parent-recursive-depth"`
+	ResolveTransitiveDependencies bool   `yaml:"resolve-transitive-dependencies" json:"resolve-transitive-dependencies" mapstructure:"resolve-transitive-dependencies"`
 }
 
 func defaultJavaConfig() javaConfig {
 	def := java.DefaultArchiveCatalogerConfig()
 
 	return javaConfig{
-		UseNetwork:              def.UseNetwork,
-		MaxParentRecursiveDepth: def.MaxParentRecursiveDepth,
-		UseMavenLocalRepository: def.UseMavenLocalRepository,
-		MavenLocalRepositoryDir: def.MavenLocalRepositoryDir,
-		MavenURL:                def.MavenBaseURL,
+		UseNetwork:                    nil, // this defaults to false, which is the API default
+		MaxParentRecursiveDepth:       def.MaxParentRecursiveDepth,
+		UseMavenLocalRepository:       nil, // this defaults to false, which is the API default
+		MavenLocalRepositoryDir:       def.MavenLocalRepositoryDir,
+		MavenURL:                      def.MavenBaseURL,
+		ResolveTransitiveDependencies: def.ResolveTransitiveDependencies,
 	}
 }
 
@@ -43,4 +45,5 @@ TIP: If you want to download all required pom files to the local repository with
 build, run 'mvn help:effective-pom' before performing the scan with syft.`)
 	descriptions.Add(&o.MavenLocalRepositoryDir, `override the default location of the local Maven repository. 
 the default is the subdirectory '.m2/repository' in your home directory`)
+	descriptions.Add(&o.ResolveTransitiveDependencies, `resolve transient dependencies such as those defined in a dependency's POM on Maven central`)
 }

cmd/syft/internal/options/javascript.go

@@ -3,7 +3,7 @@ package options
 import "github.com/anchore/clio"
 
 type javaScriptConfig struct {
-	SearchRemoteLicenses bool   `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
+	SearchRemoteLicenses *bool  `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
 	NpmBaseURL           string `json:"npm-base-url" yaml:"npm-base-url" mapstructure:"npm-base-url"`
 }
 

cmd/syft/internal/options/output_file.go

@@ -28,7 +28,7 @@ func (o *OutputFile) AddFlags(flags clio.FlagSet) {
 
 		if pfp, ok := flags.(fangs.PFlagSetProvider); ok {
 			flagSet := pfp.PFlagSet()
-			flagSet.Lookup("file").Deprecated = "use: output"
+			flagSet.Lookup("file").Deprecated = "use: --output FORMAT=PATH"
 		}
 	}
 }

cmd/syft/internal/options/unknowns.go

@@ -0,0 +1,31 @@
+package options
+
+import (
+	"github.com/anchore/clio"
+	"github.com/anchore/syft/syft/cataloging"
+)
+
+type unknownsConfig struct {
+	RemoveWhenPackagesDefined  bool `json:"remove-when-packages-defined" yaml:"remove-when-packages-defined" mapstructure:"remove-when-packages-defined"`
+	ExecutablesWithoutPackages bool `json:"executables-without-packages" yaml:"executables-without-packages" mapstructure:"executables-without-packages"`
+	UnexpandedArchives         bool `json:"unexpanded-archives" yaml:"unexpanded-archives" mapstructure:"unexpanded-archives"`
+}
+
+var _ interface {
+	clio.FieldDescriber
+} = (*unknownsConfig)(nil)
+
+func (o *unknownsConfig) DescribeFields(descriptions clio.FieldDescriptionSet) {
+	descriptions.Add(&o.RemoveWhenPackagesDefined, `remove unknown errors on files with discovered packages`)
+	descriptions.Add(&o.ExecutablesWithoutPackages, `include executables without any identified packages`)
+	descriptions.Add(&o.UnexpandedArchives, `include archives which were not expanded and searched`)
+}
+
+func defaultUnknowns() unknownsConfig {
+	def := cataloging.DefaultUnknownsConfig()
+	return unknownsConfig{
+		RemoveWhenPackagesDefined:  def.RemoveWhenPackagesDefined,
+		ExecutablesWithoutPackages: def.IncludeExecutablesWithoutPackages,
+		UnexpandedArchives:         def.IncludeUnexpandedArchives,
+	}
+}

cmd/syft/internal/test/integration/.gitignore

@@ -0,0 +1 @@
+results

cmd/syft/internal/test/integration/all_layers_squashed_comparison_test.go

@@ -7,7 +7,7 @@ import (
 )
 
 func Test_AllLayersIncludesSquashed(t *testing.T) {
-	// This is a verification test for issue #894 (https://github.com/anchore/syft/issues/894)
+	// This is a verification test for issue grype/#894 (https://github.com/anchore/grype/issues/894)
 	allLayers, _ := catalogFixtureImage(t, "image-suse-all-layers", source.AllLayersScope)
 	squashed, _ := catalogFixtureImage(t, "image-suse-all-layers", source.SquashedScope)
 

cmd/syft/internal/test/integration/catalog_packages_cases_test.go

@@ -265,7 +265,7 @@ var dirOnlyTestCases = []testCase{
 		name:        "find java packages including pom.xml", // directory scans can include packages that have yet to be installed
 		pkgType:     pkg.JavaPkg,
 		pkgLanguage: pkg.Java,
-		duplicates:  1, // joda-time is included in both pom.xml AND the .jar collection
+		duplicates:  2, // joda-time and example-java-app-maven are included in both pom.xml AND the .jar collection
 		pkgInfo: map[string]string{
 			"example-java-app-maven": "0.1.0",
 			"joda-time":              "2.9.2",
@@ -410,6 +410,14 @@ var dirOnlyTestCases = []testCase{
 			"octo-org/this-repo/.github/workflows/workflow-1.yml": "172239021f7ba04fe7327647b213799853a9eb89",
 		},
 	},
+	{
+		name:        "find opam package",
+		pkgType:     pkg.OpamPkg,
+		pkgLanguage: pkg.OCaml,
+		pkgInfo: map[string]string{
+			"ocaml-base-compiler": "4.14.0",
+		},
+	},
 }
 
 var commonTestCases = []testCase{

cmd/syft/internal/test/integration/catalog_packages_test.go

@@ -52,6 +52,7 @@ func TestPkgCoverageImage(t *testing.T) {
 	definedLanguages.Remove(pkg.Dart.String())
 	definedLanguages.Remove(pkg.Swift.String())
 	definedLanguages.Remove(pkg.Swipl.String())
+	definedLanguages.Remove(pkg.OCaml.String())
 	definedLanguages.Remove(pkg.CPP.String())
 	definedLanguages.Remove(pkg.Haskell.String())
 	definedLanguages.Remove(pkg.Elixir.String())
@@ -78,6 +79,7 @@ func TestPkgCoverageImage(t *testing.T) {
 	definedPkgs.Remove(string(pkg.LinuxKernelModulePkg))
 	definedPkgs.Remove(string(pkg.SwiftPkg))
 	definedPkgs.Remove(string(pkg.SwiplPackPkg))
+	definedPkgs.Remove(string(pkg.OpamPkg))
 	definedPkgs.Remove(string(pkg.GithubActionPkg))
 	definedPkgs.Remove(string(pkg.GithubActionWorkflowPkg))
 

cmd/syft/internal/test/integration/encode_decode_cycle_test.go

@@ -2,7 +2,9 @@ package integration
 
 import (
 	"bytes"
-	"regexp"
+	"os"
+	"path/filepath"
+	"strings"
 	"testing"
 
 	"github.com/google/go-cmp/cmp"
@@ -12,8 +14,6 @@ import (
 
 	"github.com/anchore/syft/cmd/syft/internal/options"
 	"github.com/anchore/syft/syft/format"
-	"github.com/anchore/syft/syft/format/cyclonedxjson"
-	"github.com/anchore/syft/syft/format/cyclonedxxml"
 	"github.com/anchore/syft/syft/format/syftjson"
 	"github.com/anchore/syft/syft/source"
 )
@@ -43,26 +43,27 @@ func TestEncodeDecodeEncodeCycleComparison(t *testing.T) {
 			},
 			json: true,
 		},
-		{
-			name: cyclonedxjson.ID.String(),
-			redactor: func(in []byte) []byte {
-				// unstable values
-				in = regexp.MustCompile(`"(timestamp|serialNumber|bom-ref|ref)":\s*"(\n|[^"])+"`).ReplaceAll(in, []byte(`"$1": "redacted"`))
-				in = regexp.MustCompile(`"(dependsOn)":\s*\[(?:\s|[^]])+]`).ReplaceAll(in, []byte(`"$1": []`))
-				return in
-			},
-			json: true,
-		},
-		{
-			name: cyclonedxxml.ID.String(),
-			redactor: func(in []byte) []byte {
-				// unstable values
-				in = regexp.MustCompile(`(serialNumber|bom-ref|ref)="[^"]+"`).ReplaceAll(in, []byte{})
-				in = regexp.MustCompile(`<timestamp>[^<]+</timestamp>`).ReplaceAll(in, []byte{})
-
-				return in
-			},
-		},
+		// TODO: ignoring the `ref` field though does create stable results to compare, but the SBOM is fundamentally gutted and not worth comparing (find a better redaction or compare method)
+		//{
+		//	name: cyclonedxjson.ID.String(),
+		//	redactor: func(in []byte) []byte {
+		//		// unstable values
+		//		in = regexp.MustCompile(`"(timestamp|serialNumber|bom-ref|ref)":\s*"(\n|[^"])+"`).ReplaceAll(in, []byte(`"$1": "redacted"`))
+		//		in = regexp.MustCompile(`"(dependsOn)":\s*\[(?:\s|[^]])+]`).ReplaceAll(in, []byte(`"$1": []`))
+		//		return in
+		//	},
+		//	json: true,
+		//},
+		//{
+		//	name: cyclonedxxml.ID.String(),
+		//	redactor: func(in []byte) []byte {
+		//		// unstable values
+		//		in = regexp.MustCompile(`(serialNumber|bom-ref|ref)="[^"]+"`).ReplaceAll(in, []byte{})
+		//		in = regexp.MustCompile(`<timestamp>[^<]+</timestamp>`).ReplaceAll(in, []byte{})
+		//
+		//		return in
+		//	},
+		//},
 	}
 
 	opts := options.DefaultOutput()
@@ -112,6 +113,21 @@ func TestEncodeDecodeEncodeCycleComparison(t *testing.T) {
 					diffs := dmp.DiffMain(string(by1), string(by2), true)
 					t.Errorf("diff: %s", dmp.DiffPrettyText(diffs))
 				}
+
+				// write raw IMAGE@NAME-start and IMAGE@NAME-finish to files within the results dir
+				// ... this is helpful for debugging
+				require.NoError(t, os.MkdirAll("results", 0700))
+
+				suffix := "sbom"
+				switch {
+				case strings.Contains(test.name, "json"):
+					suffix = "json"
+				case strings.Contains(test.name, "xml"):
+					suffix = "xml"
+				}
+
+				require.NoError(t, os.WriteFile(filepath.Join("results", image+"@"+test.name+"-start."+suffix), by1, 0600))
+				require.NoError(t, os.WriteFile(filepath.Join("results", image+"@"+test.name+"-finish."+suffix), by2, 0600))
 			}
 		})
 	}

cmd/syft/internal/test/integration/go_compiler_detection_test.go

@@ -35,8 +35,8 @@ func TestGolangCompilerDetection(t *testing.T) {
 			for _, pkg := range packages {
 				foundCompilerVersions[pkg.Version] = struct{}{}
 				foundPURL[pkg.PURL] = struct{}{}
-				for _, cpe := range pkg.CPEs {
-					foundCPE[cpe] = struct{}{}
+				for _, c := range pkg.CPEs {
+					foundCPE[c] = struct{}{}
 				}
 			}
 

cmd/syft/internal/test/integration/package_deduplication_test.go

@@ -1,5 +1,3 @@
-//go:build !arm64
-
 package integration
 
 import (
@@ -7,7 +5,6 @@ import (
 	"testing"
 
 	"github.com/stretchr/testify/assert"
-	"github.com/stretchr/testify/require"
 
 	"github.com/anchore/syft/syft/pkg"
 	"github.com/anchore/syft/syft/source"
@@ -22,41 +19,39 @@ func TestPackageDeduplication(t *testing.T) {
 	}{
 		{
 			scope:        source.AllLayersScope,
-			packageCount: 172, // without deduplication this would be 618
+			packageCount: 178, // without deduplication this would be ~600
 			instanceCount: map[string]int{
-				"basesystem": 1,
-				"wget":       1,
-				"curl":       2, // upgraded in the image
-				"vsftpd":     1,
-				"httpd":      1, // rpm, - we exclude binary
+				"basesystem":   1,
+				"wget":         1,
+				"curl-minimal": 2, // upgraded in the image
+				"vsftpd":       1,
+				"httpd":        1, // rpm, - we exclude binary
 			},
 			locationCount: map[string]int{
-				"basesystem-10.0-7.el7.centos": 4,
-				"curl-7.29.0-59.el7":           1, // from base image
-				"curl-7.29.0-59.el7_9.1":       3, // upgrade
-				"wget-1.14-18.el7_6.1":         3,
-				"vsftpd-3.0.2-29.el7_9":        2,
-				"httpd-2.4.6-97.el7.centos.5":  1,
-				// "httpd-2.4.6":                  1, // binary
+				"basesystem-11-13.el9":               5, // in all layers
+				"curl-minimal-7.76.1-26.el9_3.2.0.1": 2, // base + wget layer
+				"curl-minimal-7.76.1-29.el9_4.1":     3, // curl upgrade layer + all above layers
+				"wget-1.21.1-8.el9_4":                4, // wget + all above layers
+				"vsftpd-3.0.5-5.el9":                 2, // vsftpd + all above layers
+				"httpd-2.4.57-11.el9_4.1":            1, // last layer
 			},
 		},
 		{
 			scope:        source.SquashedScope,
-			packageCount: 170,
+			packageCount: 172,
 			instanceCount: map[string]int{
-				"basesystem": 1,
-				"wget":       1,
-				"curl":       1, // upgraded, but the most recent
-				"vsftpd":     1,
-				"httpd":      1, // rpm, binary is now excluded by overlap
+				"basesystem":   1,
+				"wget":         1,
+				"curl-minimal": 1, // upgraded, but the most recent
+				"vsftpd":       1,
+				"httpd":        1, // rpm, binary is now excluded by overlap
 			},
 			locationCount: map[string]int{
-				"basesystem-10.0-7.el7.centos": 1,
-				"curl-7.29.0-59.el7_9.1":       1, // upgrade
-				"wget-1.14-18.el7_6.1":         1,
-				"vsftpd-3.0.2-29.el7_9":        1,
-				"httpd-2.4.6-97.el7.centos.5":  1,
-				// "httpd-2.4.6":                  1, // binary (excluded)
+				"basesystem-11-13.el9":           1,
+				"curl-minimal-7.76.1-29.el9_4.1": 1, // upgrade
+				"wget-1.21.1-8.el9_4":            1,
+				"vsftpd-3.0.5-5.el9":             1,
+				"httpd-2.4.57-11.el9_4.1":        1,
 			},
 		},
 	}
@@ -75,20 +70,21 @@ func TestPackageDeduplication(t *testing.T) {
 				pkgs := sbom.Artifacts.Packages.PackagesByName(name)
 
 				// with multiple packages with the same name, something is wrong (or this is the wrong fixture)
-				require.Len(t, pkgs, expectedInstanceCount)
+				if assert.Len(t, pkgs, expectedInstanceCount, "unexpected package count for %s", name) {
+					for _, p := range pkgs {
+						nameVersion := fmt.Sprintf("%s-%s", name, p.Version)
+						expectedLocationCount, ok := tt.locationCount[nameVersion]
+						if !ok {
+							t.Errorf("missing name-version: %s", nameVersion)
+							continue
+						}
 
-				for _, p := range pkgs {
-					nameVersion := fmt.Sprintf("%s-%s", name, p.Version)
-					expectedLocationCount, ok := tt.locationCount[nameVersion]
-					if !ok {
-						t.Fatalf("missing name-version: %s", nameVersion)
+						// we should see merged locations (assumption, there was 1 location for each package)
+						assert.Len(t, p.Locations.ToSlice(), expectedLocationCount, "unexpected location count for %s", nameVersion)
+
+						// all paths should match
+						assert.Len(t, p.Locations.CoordinateSet().Paths(), 1, "unexpected location count for %s", nameVersion)
 					}
-
-					// we should see merged locations (assumption, there was 1 location for each package)
-					assert.Len(t, p.Locations.ToSlice(), expectedLocationCount)
-
-					// all paths should match
-					assert.Len(t, p.Locations.CoordinateSet().Paths(), 1)
 				}
 			}
 

cmd/syft/internal/test/integration/sbom_metadata_component_test.go

@@ -0,0 +1,25 @@
+package integration
+
+import (
+	"reflect"
+	"testing"
+
+	"github.com/anchore/syft/syft/pkg"
+	"github.com/anchore/syft/syft/source"
+)
+
+func TestSbomMetadataComponent(t *testing.T) {
+	sbom, _ := catalogFixtureImage(t, "image-sbom-metadata-component", source.SquashedScope, "+sbom-cataloger")
+
+	expectedPkgs := []string{"first-subcomponent", "main-component"}
+	foundPkgs := []string{}
+
+	for sbomPkg := range sbom.Artifacts.Packages.Enumerate(pkg.JavaPkg) {
+		foundPkgs = append(foundPkgs, sbomPkg.Name)
+	}
+
+	// check if both the package in `.metadata.component` and the one in `.components` were found
+	if !reflect.DeepEqual(expectedPkgs, foundPkgs) {
+		t.Errorf("expected packages %v, got %v", expectedPkgs, foundPkgs)
+	}
+}

cmd/syft/internal/test/integration/test-fixtures/Makefile

@@ -1,6 +1,21 @@
-# change these if you want CI to not use previous stored cache
-INTEGRATION_CACHE_BUSTER := "894d8ca"
+FINGERPRINT_FILE := cache.fingerprint
 
-.PHONY: cache.fingerprint
-cache.fingerprint:
-	find image-* -type f -exec md5sum {} + | awk '{print $1}' | sort | tee /dev/stderr | md5sum | tee cache.fingerprint && echo "$(INTEGRATION_CACHE_BUSTER)" >> cache.fingerprint
+.DEFAULT_GOAL := fixtures
+
+# requirement 1: 'fixtures' goal to generate any and all test fixtures
+fixtures:
+	@echo "nothing to do"
+
+# requirement 2: 'fingerprint' goal to determine if the fixture input that indicates any existing cache should be busted
+fingerprint: $(FINGERPRINT_FILE)
+
+# requirement 3: we always need to recalculate the fingerprint based on source regardless of any existing fingerprint
+.PHONY: $(FINGERPRINT_FILE)
+$(FINGERPRINT_FILE):
+	@find image-* -type f -exec sha256sum {} \; | sort -k2 > $(FINGERPRINT_FILE)
+	@#cat $(FINGERPRINT_FILE) | sha256sum | awk '{print $$1}'
+
+# requirement 4: 'clean' goal to remove all generated test fixtures
+.PHONY: clean
+clean:
+	rm -f $(FINGERPRINT_FILE)

cmd/syft/internal/test/integration/test-fixtures/image-golang-compiler/Dockerfile

@@ -1 +1,6 @@
-FROM golang:1.18.10-alpine
+FROM --platform=linux/amd64 golang:1.18.10-alpine
+
+FROM scratch
+
+# we don't need the entire golang toolchain, just a single binary with the stdlib baked in
+COPY --from=0 /usr/local/go/bin/gofmt bin/gofmt

cmd/syft/internal/test/integration/test-fixtures/image-java-no-main-package/Dockerfile

@@ -1,4 +1,4 @@
-FROM jenkins/jenkins:2.346.3-slim-jdk17@sha256:028fbbd9112c60ed086f5197fcba71992317864d27644e5949cf9c52ff4b65f0
+FROM jenkins/jenkins:2.346.3-slim-jdk17@sha256:028fbbd9112c60ed086f5197fcba71992317864d27644e5949cf9c52ff4b65f0 AS base
 
 USER root
 
@@ -12,7 +12,7 @@ RUN apt-get update 2>&1 > /dev/null && apt-get install -y less zip 2>&1 > /dev/n
 
 RUN unzip ../jenkins.war 2>&1 > /dev/null
 
-RUN rm -f ./META-INF/MANIFEST.MF
+RUN rm -rf ./META-INF/MANIFEST.MF ./WEB-INF ./jsbundles ./scripts ./css
 
 WORKDIR /usr/share/jenkins
 
@@ -21,3 +21,7 @@ RUN rm -rf jenkins.war
 RUN cd ./tmp && zip -r ../jenkins.war . && cd ..
 
 RUN rm -rf ./tmp
+
+FROM scratch
+
+COPY --from=base /usr/share/jenkins/jenkins.war /jenkins.war

cmd/syft/internal/test/integration/test-fixtures/image-java-virtualpath-regression/Dockerfile

@@ -1,7 +1,15 @@
-FROM alpine:3.18.3@sha256:7144f7bab3d4c2648d7e59409f15ec52a18006a128c733fcff20d3a4a54ba44a
+FROM alpine:3.18.3@sha256:7144f7bab3d4c2648d7e59409f15ec52a18006a128c733fcff20d3a4a54ba44a AS base
 
 RUN wget https://repo1.maven.org/maven2/org/jvnet/hudson/main/hudson-war/2.2.1/hudson-war-2.2.1.war
 
 RUN mv hudson-war-2.2.1.war hudson.war
 
+# let's make this image a little smaller as to not take up so much disk space
+# we'll only keep the jar metadata files (pom data + manifest) and throw away the rest
+RUN apk add --no-cache python3 py3-pip
+COPY extract.py /extract.py
+RUN python extract.py
 
+FROM scratch
+
+COPY --from=base /slim /

cmd/syft/internal/test/integration/test-fixtures/image-java-virtualpath-regression/extract.py

@@ -0,0 +1,69 @@
+import os
+import zipfile
+import io
+
+ARCHIVE_EXTENSIONS = ('.jar', '.war', '.ear', '.hpi', '.war', '.sar', '.nar', '.par')
+METADATA_FILES = ('pom.xml', 'pom.properties', 'MANIFEST.MF')
+
+
+def slim_archive(archive, output_dir, base_path="", archive_name=""):
+    """
+    extracts metadata files from the archive and creates a slim JAR file
+    containing only these files. handles nested JARs by preserving them.
+    """
+    slim_buffer = io.BytesIO()
+    with zipfile.ZipFile(archive, 'r') as zip_file:
+        with zipfile.ZipFile(slim_buffer, 'w', zipfile.ZIP_DEFLATED) as slim_zip:
+            for file_name in zip_file.namelist():
+                # check for metadata files or nested JARs
+                if file_name.endswith(METADATA_FILES):
+                    # add metadata files directly to the slimmed archive
+                    file_data = zip_file.read(file_name)
+                    slim_zip.writestr(file_name, file_data)
+                elif file_name.endswith(ARCHIVE_EXTENSIONS):
+                    # if it's a nested archive, recursively slim it
+                    nested_archive = io.BytesIO(zip_file.read(file_name))
+                    nested_slim_buffer = io.BytesIO()
+                    slim_archive(
+                        nested_archive,
+                        nested_slim_buffer,
+                        base_path=os.path.join(base_path, os.path.dirname(file_name)),
+                        archive_name=os.path.basename(file_name)
+                    )
+                    # add the slimmed nested archive back to the parent archive
+                    nested_slim_buffer.seek(0)
+                    slim_zip.writestr(file_name, nested_slim_buffer.read())
+
+    # write out the slimmed JAR to the output directory if output_dir is a directory
+    if isinstance(output_dir, str):
+        output_path = os.path.join(output_dir, base_path, archive_name)
+        os.makedirs(os.path.dirname(output_path), exist_ok=True)
+        with open(output_path, 'wb') as f:
+            slim_buffer.seek(0)
+            f.write(slim_buffer.read())
+    else:
+        # if output_dir is a BytesIO buffer (for nested archives), just write to it
+        output_dir.seek(0)
+        output_dir.write(slim_buffer.getvalue())
+
+
+def walk_directory_and_slim_jars(base_dir, output_dir):
+    """
+    recursively walks through a directory tree looking for .jar, .war, .ear,
+    .hpi files and slims them down by keeping only metadata files.
+    """
+    for dirpath, _, filenames in os.walk(base_dir):
+        for filename in filenames:
+            if filename.endswith(ARCHIVE_EXTENSIONS):
+                archive_path = os.path.join(dirpath, filename)
+                print(f"Processing {archive_path}")
+                slim_archive(archive_path, output_dir, os.path.relpath(dirpath, base_dir), filename)
+
+
+# a helper script for slimming down JAR files by keeping only metadata files but still keeping the jar packaging,
+# including nested JARs! Useful for testing purposes.
+if __name__ == "__main__":
+    BASE_DIR = "."
+    OUTPUT_DIR = "./slim"
+    os.makedirs(OUTPUT_DIR, exist_ok=True)
+    walk_directory_and_slim_jars(BASE_DIR, OUTPUT_DIR)

cmd/syft/internal/test/integration/test-fixtures/image-large-apk-data/Dockerfile

@@ -1,4 +1,4 @@
-FROM alpine@sha256:d9a7354e3845ea8466bb00b22224d9116b183e594527fb5b6c3d30bc01a20378
+FROM alpine@sha256:d9a7354e3845ea8466bb00b22224d9116b183e594527fb5b6c3d30bc01a20378 AS base
 
 # we keep these unpinned so that if alpine
 # changes our integration tests can adapt
@@ -6,3 +6,8 @@ RUN apk add --no-cache \
             tzdata \
             vim \
             alpine-sdk
+
+# we don't need the installed bins for this test, only the APK installed metadata
+FROM scratch
+
+COPY --from=base /lib/apk/db/installed /lib/apk/db/installed

cmd/syft/internal/test/integration/test-fixtures/image-mariner-distroless/Dockerfile

@@ -1 +1,8 @@
-FROM mcr.microsoft.com/cbl-mariner/distroless/base:2.0.202205275@sha256:f550c5428df17b145851ad75983aca6d613ad4b51ca7983b2a83e67d0ac91a5d
+FROM mcr.microsoft.com/cbl-mariner/distroless/base:2.0.202205275@sha256:f550c5428df17b145851ad75983aca6d613ad4b51ca7983b2a83e67d0ac91a5d AS base
+
+# let's shoot for smaller test fixtures
+FROM scratch
+
+COPY --from=base /var/lib/rpmmanifest/container-manifest-2 /var/lib/rpmmanifest/container-manifest-2
+COPY --from=base /usr/bin/gencat /usr/bin/gencat
+COPY --from=base /usr/bin/openssl /usr/bin/openssl

cmd/syft/internal/test/integration/test-fixtures/image-owning-package/Dockerfile

@@ -1,3 +1,8 @@
-FROM ubuntu:20.04@sha256:33a5cc25d22c45900796a1aca487ad7a7cb09f09ea00b779e3b2026b4fc2faba
+FROM ubuntu:20.04@sha256:33a5cc25d22c45900796a1aca487ad7a7cb09f09ea00b779e3b2026b4fc2faba AS base
 # this covers rpm-python
 RUN apt-get update && apt-get install -y python-pil=6.2.1-3
+
+# let's save some space...
+FROM scratch
+
+COPY --from=base /var/lib/dpkg/status /var/lib/dpkg/status

cmd/syft/internal/test/integration/test-fixtures/image-photon-all-layers/Dockerfile

@@ -1 +1,5 @@
-FROM photon:5.0-20230729@sha256:4cf2a1ce0a3f4625f13a0becb6b9bccfdb014c565be6e9a2ec4c4aad1ff8a5d9
+FROM photon:5.0-20230729@sha256:4cf2a1ce0a3f4625f13a0becb6b9bccfdb014c565be6e9a2ec4c4aad1ff8a5d9 AS base
+
+FROM scratch
+
+COPY --from=base /usr/lib/sysimage/rpm /usr/lib/sysimage/rpm

cmd/syft/internal/test/integration/test-fixtures/image-pkg-coverage/pkgs/opam/ocaml-base-compiler.4.14.0/opam

@@ -0,0 +1,93 @@
+opam-version: "2.0"
+synopsis: "Official release 4.14.0"
+maintainer: [
+  "David Allsopp <david@tarides.com>"
+  "Florian Angeletti <florian.angeletti@inria.fr>"
+]
+authors: "Xavier Leroy and many contributors"
+license: "LGPL-2.1-or-later WITH OCaml-LGPL-linking-exception"
+homepage: "https://ocaml.org"
+bug-reports: "https://github.com/ocaml/opam-repository/issues"
+depends: [
+  "ocaml" {= "4.14.0" & post}
+  "base-unix" {post}
+  "base-bigarray" {post}
+  "base-threads" {post}
+  "host-arch-arm32" {arch = "arm32" & post}
+  "host-arch-arm64" {arch = "arm64" & post}
+  "host-arch-ppc64" {arch = "ppc64" & post}
+  "host-arch-riscv64" {arch = "riscv64" & post}
+  "host-arch-s390x" {arch = "s390x" & post}
+  "host-arch-x86_32" {os != "win32" & arch = "x86_32" & post}
+  "host-arch-x86_64" {os != "win32" & arch = "x86_64" & post}
+  "host-arch-unknown"
+    {os != "win32" & arch != "arm32" & arch != "arm64" & arch != "ppc64" &
+     arch != "riscv64" &
+     arch != "s390x" &
+     arch != "x86_32" &
+     arch != "x86_64" &
+     post}
+  (("arch-x86_64" {os = "win32" & arch = "x86_64"} &
+    (("system-mingw" & "mingw-w64-shims" {os-distribution = "cygwin" & post}) |
+     "system-msvc")) |
+   ("arch-x86_32" {os = "win32"} &
+    (("system-mingw" & "mingw-w64-shims" {os-distribution = "cygwin" & post}) |
+     "system-msvc")) |
+   "host-system-other" {os != "win32" & post})
+  "ocaml-options-vanilla" {post}
+  "flexdll" {>= "0.36" & os = "win32"}
+]
+conflict-class: "ocaml-core-compiler"
+flags: compiler
+setenv: CAML_LD_LIBRARY_PATH = "%{lib}%/stublibs"
+build: [
+  [
+    "./configure"
+    "--host=x86_64-pc-windows"
+      {system-msvc:installed & arch-x86_64:installed}
+    "--host=x86_64-w64-mingw32"
+      {os-distribution = "cygwin" & system-mingw:installed &
+       arch-x86_64:installed}
+    "--host=i686-pc-windows" {system-msvc:installed & arch-x86_32:installed}
+    "--host=i686-w64-mingw32"
+      {os-distribution = "cygwin" & system-mingw:installed &
+       arch-x86_32:installed}
+    "--prefix=%{prefix}%"
+    "--docdir=%{doc}%/ocaml"
+    "--with-flexdll=%{flexdll:share}%" {os = "win32" & flexdll:installed}
+    "-C"
+    "CC=cc" {os = "openbsd" | os = "macos"}
+    "ASPP=cc -c" {os = "openbsd" | os = "macos"}
+  ]
+  [make "-j%{jobs}%"]
+]
+install: [make "install"]
+build-env: MSYS2_ARG_CONV_EXCL = "*"
+post-messages: [
+  """\
+A failure in the middle of the build may be caused by build parallelism
+   (enabled by default).
+   Please file a bug report at https://github.com/ocaml/opam-repository/issues"""
+    {failure & jobs > "1"}
+  """\
+You can try installing again including --jobs=1
+   to force a sequential build instead."""
+    {failure & jobs > "1" & opam-version >= "2.0.5"}
+]
+dev-repo: "git+https://github.com/ocaml/ocaml#4.14"
+url {
+  src: "https://github.com/ocaml/ocaml/archive/4.14.0.tar.gz"
+  checksum:
+    "sha256=39f44260382f28d1054c5f9d8bf4753cb7ad64027da792f7938344544da155e8"
+}
+extra-source "ocaml-base-compiler.install" {
+  src:
+    "https://raw.githubusercontent.com/ocaml/opam-source-archives/main/patches/ocaml-base-compiler/ocaml-base-compiler.install"
+  checksum: [
+    "sha256=79f2a1a5044a91350a0eb6ce12e261a72a2855c094c425cddf3860e58c486678"
+    "md5=3e969b841df1f51ca448e6e6295cb451"
+  ]
+}
+x-env-path-rewrite: [
+  [CAML_LD_LIBRARY_PATH (";" {os = "win32"} ":" {os != "win32"}) "target"]
+]

cmd/syft/internal/test/integration/test-fixtures/image-sbom-metadata-component/Dockerfile

@@ -0,0 +1,2 @@
+FROM scratch
+COPY test.cdx.json /

cmd/syft/internal/test/integration/test-fixtures/image-sbom-metadata-component/test.cdx.json

@@ -0,0 +1,32 @@
+{
+  "bomFormat" : "CycloneDX",
+  "specVersion" : "1.5",
+  "serialNumber" : "urn:uuid:dc807d4b-0415-35ab-ba61-49b5d39bc2d9",
+  "version" : 1,
+  "metadata" : {
+    "component" : {
+      "name" : "main-component",
+      "version" : "1.2.3",
+      "purl" : "pkg:maven/org.example/main-component@1.2.3",
+      "type" : "library",
+      "bom-ref" : "pkg:maven/org.example/main-component@1.2.3"
+    }
+  },
+  "components" : [
+    {
+      "name" : "first-subcomponent",
+      "version" : "2.3.4",
+      "purl" : "pkg:maven/org.example/first-subcomponent@2.3.4",
+      "type" : "library",
+      "bom-ref" : "pkg:maven/org.example/first-subcomponent@2.3.4"
+    }
+  ],
+  "dependencies" : [
+    {
+      "ref" : "pkg:maven/org.example/main-component-assembly@1.2.3",
+      "dependsOn" : [
+        "pkg:maven/org.example/first-subcomponent@2.3.4"
+      ]
+    }
+  ]
+}

cmd/syft/internal/test/integration/test-fixtures/image-sqlite-rpmdb/Dockerfile

@@ -1 +1,6 @@
-FROM fedora:35@sha256:36af84ba69e21c9ef86a0424a090674c433b2b80c2462e57503886f1d823abe8
+FROM fedora:35@sha256:36af84ba69e21c9ef86a0424a090674c433b2b80c2462e57503886f1d823abe8 AS base
+
+# lets save some space
+FROM scratch
+
+COPY --from=base /var/lib/rpm /var/lib/rpm

cmd/syft/internal/test/integration/test-fixtures/image-suse-all-layers/Dockerfile

@@ -1,2 +1,11 @@
-FROM registry.suse.com/suse/sle15:15.3.17.20.20@sha256:fd657ecbab5ca564d6933e887f6ae8542a9398e6a4b399f352ce10c3a24afc64
+FROM registry.suse.com/suse/sle15:15.3.17.20.20@sha256:fd657ecbab5ca564d6933e887f6ae8542a9398e6a4b399f352ce10c3a24afc64 AS base
 RUN zypper in -y wget
+
+# let's save some space... we really just need an image that has an RPM DB that is linked across layers
+FROM --platform=linux/amd64 busybox:1.36.1
+
+# setup a link /var/lib/rpm -> ../../usr/lib/sysimage/rpm
+RUN mkdir -p /var/lib && ln -s ../../usr/lib/sysimage/rpm /var/lib/rpm
+
+# copy the RPM DB from the SUSE image
+COPY --from=base /usr/lib/sysimage/rpm/Packages.db /usr/lib/sysimage/rpm/Packages.db

cmd/syft/internal/test/integration/test-fixtures/image-test-java-purls/Dockerfile

@@ -1 +1,18 @@
-FROM anchore/test_images:java-1abc58f@sha256:3add9f90e9ed35739cc99b7830767e09eec921052e2412adf4491648c741f066
+FROM docker.io/anchore/test_images:java-88948cc@sha256:dea0e6c24636937f53bdc997d9960c2a18966d1e38bcd8ebd0c395d4e169b806 AS base
+
+# not covered in testing...
+RUN rm /packages/gradle-7.1.1-bin.zip
+
+RUN apk add --no-cache python3 py3-pip
+
+COPY extract.py /extract.py
+
+WORKDIR /
+
+# let's make this image a little smaller as to not take up so much disk space
+# we'll only keep the jar metadata files (pom data + manifest) and throw away the rest
+RUN python extract.py
+
+FROM scratch
+
+COPY --from=base /slim/packages /packages

cmd/syft/internal/test/integration/test-fixtures/image-test-java-purls/extract.py

@@ -0,0 +1,69 @@
+import os
+import zipfile
+import io
+
+ARCHIVE_EXTENSIONS = ('.jar', '.war', '.ear', '.hpi', '.war', '.sar', '.nar', '.par')
+METADATA_FILES = ('pom.xml', 'pom.properties', 'MANIFEST.MF')
+
+
+def slim_archive(archive, output_dir, base_path="", archive_name=""):
+    """
+    extracts metadata files from the archive and creates a slim JAR file
+    containing only these files. handles nested JARs by preserving them.
+    """
+    slim_buffer = io.BytesIO()
+    with zipfile.ZipFile(archive, 'r') as zip_file:
+        with zipfile.ZipFile(slim_buffer, 'w', zipfile.ZIP_DEFLATED) as slim_zip:
+            for file_name in zip_file.namelist():
+                # check for metadata files or nested JARs
+                if file_name.endswith(METADATA_FILES):
+                    # add metadata files directly to the slimmed archive
+                    file_data = zip_file.read(file_name)
+                    slim_zip.writestr(file_name, file_data)
+                elif file_name.endswith(ARCHIVE_EXTENSIONS):
+                    # if it's a nested archive, recursively slim it
+                    nested_archive = io.BytesIO(zip_file.read(file_name))
+                    nested_slim_buffer = io.BytesIO()
+                    slim_archive(
+                        nested_archive,
+                        nested_slim_buffer,
+                        base_path=os.path.join(base_path, os.path.dirname(file_name)),
+                        archive_name=os.path.basename(file_name)
+                    )
+                    # add the slimmed nested archive back to the parent archive
+                    nested_slim_buffer.seek(0)
+                    slim_zip.writestr(file_name, nested_slim_buffer.read())
+
+    # write out the slimmed JAR to the output directory if output_dir is a directory
+    if isinstance(output_dir, str):
+        output_path = os.path.join(output_dir, base_path, archive_name)
+        os.makedirs(os.path.dirname(output_path), exist_ok=True)
+        with open(output_path, 'wb') as f:
+            slim_buffer.seek(0)
+            f.write(slim_buffer.read())
+    else:
+        # if output_dir is a BytesIO buffer (for nested archives), just write to it
+        output_dir.seek(0)
+        output_dir.write(slim_buffer.getvalue())
+
+
+def walk_directory_and_slim_jars(base_dir, output_dir):
+    """
+    recursively walks through a directory tree looking for .jar, .war, .ear,
+    .hpi files and slims them down by keeping only metadata files.
+    """
+    for dirpath, _, filenames in os.walk(base_dir):
+        for filename in filenames:
+            if filename.endswith(ARCHIVE_EXTENSIONS):
+                archive_path = os.path.join(dirpath, filename)
+                print(f"Processing {archive_path}")
+                slim_archive(archive_path, output_dir, os.path.relpath(dirpath, base_dir), filename)
+
+
+# a helper script for slimming down JAR files by keeping only metadata files but still keeping the jar packaging,
+# including nested JARs! Useful for testing purposes.
+if __name__ == "__main__":
+    BASE_DIR = "."
+    OUTPUT_DIR = "./slim"
+    os.makedirs(OUTPUT_DIR, exist_ok=True)
+    walk_directory_and_slim_jars(BASE_DIR, OUTPUT_DIR)

cmd/syft/internal/test/integration/test-fixtures/image-vertical-package-dups/Dockerfile

@@ -1,6 +1,27 @@
-FROM centos:7.9.2009@sha256:be65f488b7764ad3638f236b7b515b3678369a5124c47b8d32916d6487418ea4
+FROM --platform=linux/amd64 rockylinux:9.3.20231119@sha256:d644d203142cd5b54ad2a83a203e1dee68af2229f8fe32f52a30c6e1d3c3a9e0 AS base
+
 # modifying the RPM DB multiple times will result in duplicate packages when using all-layers (if there was no de-dup logic)
 # curl is tricky, it already exists in the image and is being upgraded
-RUN yum install -y wget-1.14-18.el7_6.1 curl-7.29.0-59.el7_9.1
-RUN yum install -y vsftpd-3.0.2-29.el7_9
-RUN yum install -y httpd-2.4.6-97.el7.centos.5
+
+# but... we want to make the test image as small as possible, so we are making the changes in stages and then
+# copying the RPM DB from each stage to a final stage in separate layers. This will result in a much smaller image.
+
+FROM base AS stage1
+RUN dnf install -y wget
+
+FROM stage1 AS stage2
+RUN dnf update -y curl-minimal
+
+FROM stage2 AS stage3
+RUN dnf install -y vsftpd
+
+FROM stage3 AS stage4
+RUN dnf install -y httpd
+
+FROM scratch
+
+COPY --from=base /var/lib/rpm /var/lib/rpm
+COPY --from=stage1 /var/lib/rpm /var/lib/rpm
+COPY --from=stage2 /var/lib/rpm /var/lib/rpm
+COPY --from=stage3 /var/lib/rpm /var/lib/rpm
+COPY --from=stage4 /var/lib/rpm /var/lib/rpm

go.mod

@@ -1,52 +1,52 @@
 module github.com/anchore/syft
 
-go 1.22.0
+go 1.22.8
 
 require (
-	github.com/CycloneDX/cyclonedx-go v0.9.0
+	github.com/CycloneDX/cyclonedx-go v0.9.1
 	github.com/Masterminds/semver v1.5.0
-	github.com/Masterminds/sprig/v3 v3.2.3
+	github.com/Masterminds/sprig/v3 v3.3.0
 	github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d
 	github.com/acobaugh/osrelease v0.1.0
 	github.com/anchore/bubbly v0.0.0-20231115134915-def0aba654a9
-	github.com/anchore/clio v0.0.0-20240522144804-d81e109008aa
-	github.com/anchore/fangs v0.0.0-20240508143433-f016b099950f
+	github.com/anchore/clio v0.0.0-20241015191535-f538a9016e10
+	github.com/anchore/fangs v0.0.0-20241014201141-b6e4b3469f10
 	github.com/anchore/go-collections v0.0.0-20240216171411-9321230ce537
 	github.com/anchore/go-logger v0.0.0-20230725134548-c21dafa1ec5a
 	github.com/anchore/go-macholibre v0.0.0-20220308212642-53e6d0aaf6fb
 	github.com/anchore/go-testutils v0.0.0-20200925183923-d5f45b0d3c04
 	github.com/anchore/go-version v1.2.2-0.20200701162849-18adb9c92b9b
-	github.com/anchore/packageurl-go v0.1.1-0.20240507183024-848e011fc24f
-	github.com/anchore/stereoscope v0.0.3-0.20240725180315-50ce3be7aa1f
+	github.com/anchore/packageurl-go v0.1.1-0.20241018175412-5c22e6360c4f
+	github.com/anchore/stereoscope v0.0.5
 	github.com/anmitsu/go-shlex v0.0.0-20200514113438-38f4b401e2be
 	// we are hinting brotli to latest due to warning when installing archiver v3:
 	// go: warning: github.com/andybalholm/brotli@v1.0.1: retracted by module author: occasional panics and data corruption
 	github.com/aquasecurity/go-pep440-version v0.0.0-20210121094942-22b2f8951d46
-	github.com/bmatcuk/doublestar/v4 v4.6.1
-	github.com/charmbracelet/bubbles v0.18.0
-	github.com/charmbracelet/bubbletea v0.26.6
-	github.com/charmbracelet/lipgloss v0.12.1
-	github.com/dave/jennifer v1.7.0
+	github.com/bmatcuk/doublestar/v4 v4.7.1
+	github.com/charmbracelet/bubbles v0.20.0
+	github.com/charmbracelet/bubbletea v1.1.2
+	github.com/charmbracelet/lipgloss v0.13.1
+	github.com/dave/jennifer v1.7.1
 	github.com/deitch/magic v0.0.0-20230404182410-1ff89d7342da
 	github.com/distribution/reference v0.6.0
-	github.com/docker/docker v27.1.1+incompatible
+	github.com/docker/docker v27.3.1+incompatible
 	github.com/dustin/go-humanize v1.0.1
 	github.com/elliotchance/phpserialize v1.4.0
 	github.com/facebookincubator/nvdtools v0.1.5
-	github.com/github/go-spdx/v2 v2.3.1
+	github.com/github/go-spdx/v2 v2.3.2
 	github.com/gkampitakis/go-snaps v0.5.7
-	github.com/go-git/go-billy/v5 v5.5.0
+	github.com/go-git/go-billy/v5 v5.6.0
 	github.com/go-git/go-git/v5 v5.12.0
 	github.com/go-test/deep v1.1.1
 	github.com/google/go-cmp v0.6.0
-	github.com/google/go-containerregistry v0.20.1
+	github.com/google/go-containerregistry v0.20.2
 	github.com/google/licensecheck v0.3.1
 	github.com/google/uuid v1.6.0
 	github.com/gookit/color v1.5.4
 	github.com/hashicorp/go-multierror v1.1.1
 	github.com/iancoleman/strcase v0.3.0
 	github.com/invopop/jsonschema v0.7.0
-	github.com/jedib0t/go-pretty/v6 v6.5.9
+	github.com/jedib0t/go-pretty/v6 v6.6.1
 	github.com/jinzhu/copier v0.4.0
 	github.com/kastenhq/goversion v0.0.0-20230811215019-93b2f8823953
 	github.com/knqyf263/go-rpmdb v0.1.1
@@ -78,30 +78,31 @@ require (
 	github.com/xeipuuv/gojsonschema v1.2.0
 	github.com/zyedidia/generic v1.2.2-0.20230320175451-4410d2372cb1
 	go.uber.org/goleak v1.3.0
-	golang.org/x/mod v0.20.0
-	golang.org/x/net v0.27.0
+	golang.org/x/mod v0.21.0
+	golang.org/x/net v0.30.0
 	gopkg.in/yaml.v3 v3.0.1
-	modernc.org/sqlite v1.31.1
+	modernc.org/sqlite v1.33.1
 )
 
-require google.golang.org/genproto v0.0.0-20231106174013-bbf56f31fb17 // indirect
+require google.golang.org/genproto v0.0.0-20240213162025-012b6fc9bca9 // indirect
 
 require (
 	github.com/BurntSushi/toml v1.4.0
-	github.com/adrg/xdg v0.5.0
+	github.com/OneOfOne/xxhash v1.2.8
+	github.com/adrg/xdg v0.5.1
 	github.com/magiconair/properties v1.8.7
-	golang.org/x/exp v0.0.0-20231108232855-2478ac86f678
+	golang.org/x/exp v0.0.0-20240719175910-8a7402abbf56
 )
 
 require (
-	dario.cat/mergo v1.0.0 // indirect
+	dario.cat/mergo v1.0.1 // indirect
 	github.com/AdaLogics/go-fuzz-headers v0.0.0-20230811130428-ced1acdcaa24 // indirect
 	github.com/AdamKorcz/go-118-fuzz-build v0.0.0-20230306123547-8075edf89bb0 // indirect
 	github.com/DataDog/zstd v1.5.5 // indirect
 	github.com/Masterminds/goutils v1.1.1 // indirect
-	github.com/Masterminds/semver/v3 v3.2.0 // indirect
-	github.com/Microsoft/go-winio v0.6.1 // indirect
-	github.com/Microsoft/hcsshim v0.11.4 // indirect
+	github.com/Masterminds/semver/v3 v3.3.0 // indirect
+	github.com/Microsoft/go-winio v0.6.2 // indirect
+	github.com/Microsoft/hcsshim v0.11.7 // indirect
 	github.com/ProtonMail/go-crypto v1.0.0 // indirect
 	github.com/anchore/go-struct-converter v0.0.0-20221118182256-c68fdcfa2092 // indirect
 	github.com/andybalholm/brotli v1.0.4 // indirect
@@ -110,22 +111,23 @@ require (
 	github.com/aymanbagabas/go-osc52/v2 v2.0.1 // indirect
 	github.com/becheran/wildmatch-go v1.0.0 // indirect
 	github.com/charmbracelet/harmonica v0.2.0 // indirect
-	github.com/charmbracelet/x/ansi v0.1.4 // indirect
-	github.com/charmbracelet/x/input v0.1.0 // indirect
-	github.com/charmbracelet/x/term v0.1.1 // indirect
-	github.com/charmbracelet/x/windows v0.1.0 // indirect
+	github.com/charmbracelet/x/ansi v0.4.0 // indirect
+	github.com/charmbracelet/x/term v0.2.0 // indirect
 	github.com/cloudflare/circl v1.3.8 // indirect
 	github.com/containerd/cgroups v1.1.0 // indirect
-	github.com/containerd/containerd v1.7.11 // indirect
+	github.com/containerd/containerd v1.7.23 // indirect
+	github.com/containerd/containerd/api v1.7.19 // indirect
 	github.com/containerd/continuity v0.4.2 // indirect
+	github.com/containerd/errdefs v0.3.0 // indirect
 	github.com/containerd/fifo v1.1.0 // indirect
 	github.com/containerd/log v0.1.0 // indirect
+	github.com/containerd/platforms v0.2.1 // indirect
 	github.com/containerd/stargz-snapshotter/estargz v0.14.3 // indirect
-	github.com/containerd/ttrpc v1.2.2 // indirect
+	github.com/containerd/ttrpc v1.2.5 // indirect
 	github.com/containerd/typeurl/v2 v2.1.1 // indirect
-	github.com/cyphar/filepath-securejoin v0.2.4 // indirect
+	github.com/cyphar/filepath-securejoin v0.2.5 // indirect
 	github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc // indirect
-	github.com/docker/cli v27.0.3+incompatible // indirect
+	github.com/docker/cli v27.3.1+incompatible // indirect
 	github.com/docker/distribution v2.8.3+incompatible // indirect
 	github.com/docker/docker-credential-helpers v0.7.0 // indirect
 	github.com/docker/go-connections v0.4.0 // indirect
@@ -136,26 +138,25 @@ require (
 	github.com/emirpasic/gods v1.18.1 // indirect
 	github.com/erikgeiser/coninput v0.0.0-20211004153227-1c3628e74d0f // indirect
 	github.com/felixge/fgprof v0.9.3 // indirect
-	github.com/felixge/httpsnoop v1.0.3 // indirect
+	github.com/felixge/httpsnoop v1.0.4 // indirect
 	github.com/fsnotify/fsnotify v1.7.0 // indirect
-	github.com/gabriel-vasile/mimetype v1.4.4 // indirect
+	github.com/gabriel-vasile/mimetype v1.4.6 // indirect
 	github.com/gkampitakis/ciinfo v0.3.0 // indirect
 	github.com/gkampitakis/go-diff v1.3.2 // indirect
 	github.com/go-git/gcfg v1.5.1-0.20230307220236-3a3c6141e376 // indirect
-	github.com/go-logr/logr v1.2.4 // indirect
+	github.com/go-logr/logr v1.4.1 // indirect
 	github.com/go-logr/stdr v1.2.2 // indirect
 	github.com/go-restruct/restruct v1.2.0-alpha // indirect
 	github.com/gogo/protobuf v1.3.2 // indirect
 	github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da // indirect
-	github.com/golang/protobuf v1.5.3 // indirect
+	github.com/golang/protobuf v1.5.4 // indirect
 	github.com/golang/snappy v0.0.4 // indirect
 	github.com/google/pprof v0.0.0-20240409012703-83162a5b38cd // indirect
 	github.com/hashicorp/errwrap v1.1.0 // indirect
 	github.com/hashicorp/golang-lru/v2 v2.0.7 // indirect
 	github.com/hashicorp/hcl v1.0.0 // indirect
-	github.com/huandu/xstrings v1.3.3 // indirect
+	github.com/huandu/xstrings v1.5.0 // indirect
 	github.com/iancoleman/orderedmap v0.0.0-20190318233801-ac98e3ecb4b0 // indirect
-	github.com/imdario/mergo v0.3.15 // indirect
 	github.com/inconshreveable/mousetrap v1.1.0 // indirect
 	github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99 // indirect
 	github.com/kevinburke/ssh_config v1.2.0 // indirect
@@ -169,7 +170,7 @@ require (
 	github.com/mattn/go-colorable v0.1.13 // indirect
 	github.com/mattn/go-isatty v0.0.20 // indirect
 	github.com/mattn/go-localereader v0.0.2-0.20220822084749-2491eb6c1c75 // indirect
-	github.com/mattn/go-runewidth v0.0.15 // indirect
+	github.com/mattn/go-runewidth v0.0.16 // indirect
 	github.com/mgutz/ansi v0.0.0-20200706080929-d51e80ef957d // indirect
 	github.com/mitchellh/copystructure v1.2.0 // indirect
 	github.com/mitchellh/reflectwalk v1.0.2 // indirect
@@ -177,18 +178,18 @@ require (
 	github.com/moby/locker v1.0.1 // indirect
 	github.com/moby/sys/sequential v0.5.0 // indirect
 	github.com/moby/sys/signal v0.7.0 // indirect
+	github.com/moby/sys/user v0.3.0 // indirect
+	github.com/moby/sys/userns v0.1.0 // indirect
 	github.com/muesli/ansi v0.0.0-20230316100256-276c6243b2f6 // indirect
 	github.com/muesli/cancelreader v0.2.2 // indirect
-	github.com/muesli/reflow v0.3.0 // indirect
 	github.com/muesli/termenv v0.15.2 // indirect
 	github.com/ncruces/go-strftime v0.1.9 // indirect
 	github.com/nwaples/rardecode v1.1.0 // indirect
 	github.com/opencontainers/image-spec v1.1.0 // indirect
-	github.com/opencontainers/runc v1.1.12 // indirect
-	github.com/opencontainers/runtime-spec v1.1.0-rc.1 // indirect
+	github.com/opencontainers/runtime-spec v1.1.0 // indirect
 	github.com/opencontainers/selinux v1.11.0 // indirect
 	github.com/pborman/indent v1.2.1 // indirect
-	github.com/pelletier/go-toml/v2 v2.1.0 // indirect
+	github.com/pelletier/go-toml/v2 v2.2.2 // indirect
 	github.com/pierrec/lz4/v4 v4.1.19 // indirect
 	github.com/pjbgf/sha1cd v0.3.0 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
@@ -199,17 +200,17 @@ require (
 	github.com/rogpeppe/go-internal v1.12.0 // indirect
 	github.com/sagikazarmark/locafero v0.4.0 // indirect
 	github.com/sagikazarmark/slog-shim v0.1.0 // indirect
-	github.com/sahilm/fuzzy v0.1.1-0.20230530133925-c48e322e2a8f // indirect
+	github.com/sahilm/fuzzy v0.1.1 // indirect
 	github.com/secDre4mer/pkcs7 v0.0.0-20240322103146-665324a4461d // indirect
-	github.com/shopspring/decimal v1.2.0 // indirect
+	github.com/shopspring/decimal v1.4.0 // indirect
 	github.com/sirupsen/logrus v1.9.3 // indirect
 	github.com/skeema/knownhosts v1.2.2 // indirect
 	github.com/sourcegraph/conc v0.3.0 // indirect
-	github.com/spf13/cast v1.6.0 // indirect
+	github.com/spf13/cast v1.7.0 // indirect
 	github.com/spf13/pflag v1.0.5 // indirect
-	github.com/spf13/viper v1.18.2 // indirect
+	github.com/spf13/viper v1.19.0 // indirect
 	github.com/subosito/gotenv v1.6.0 // indirect
-	github.com/sylabs/sif/v2 v2.17.1 // indirect
+	github.com/sylabs/sif/v2 v2.19.2 // indirect
 	github.com/sylabs/squashfs v1.0.0 // indirect
 	github.com/therootcompany/xz v1.0.1 // indirect
 	github.com/tidwall/gjson v1.17.0 // indirect
@@ -224,22 +225,21 @@ require (
 	github.com/xi2/xz v0.0.0-20171230120015-48954b6210f8 // indirect
 	github.com/xo/terminfo v0.0.0-20220910002029-abceb7e1c41e // indirect
 	go.opencensus.io v0.24.0 // indirect
-	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.45.0 // indirect
-	go.opentelemetry.io/otel v1.19.0 // indirect
-	go.opentelemetry.io/otel/metric v1.19.0 // indirect
-	go.opentelemetry.io/otel/trace v1.19.0 // indirect
+	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.49.0 // indirect
+	go.opentelemetry.io/otel v1.24.0 // indirect
+	go.opentelemetry.io/otel/metric v1.24.0 // indirect
+	go.opentelemetry.io/otel/trace v1.24.0 // indirect
 	go.uber.org/atomic v1.9.0 // indirect
 	go.uber.org/multierr v1.9.0 // indirect
-	golang.org/x/crypto v0.25.0 // indirect
-	golang.org/x/sync v0.7.0 // indirect
-	golang.org/x/sys v0.22.0 // indirect
-	golang.org/x/term v0.22.0 // indirect
-	golang.org/x/text v0.16.0 // indirect
-	golang.org/x/tools v0.21.1-0.20240508182429-e35e4ccd0d2d // indirect
+	golang.org/x/crypto v0.28.0 // indirect
+	golang.org/x/sync v0.8.0 // indirect
+	golang.org/x/sys v0.26.0 // indirect
+	golang.org/x/term v0.25.0 // indirect
+	golang.org/x/text v0.19.0 // indirect
 	golang.org/x/xerrors v0.0.0-20220907171357-04be3eba64a2 // indirect
-	google.golang.org/genproto/googleapis/rpc v0.0.0-20231120223509-83a465c0220f // indirect
-	google.golang.org/grpc v1.59.0 // indirect
-	google.golang.org/protobuf v1.33.0 // indirect
+	google.golang.org/genproto/googleapis/rpc v0.0.0-20240314234333-6e1732d8331c // indirect
+	google.golang.org/grpc v1.62.1 // indirect
+	google.golang.org/protobuf v1.34.2 // indirect
 	gopkg.in/ini.v1 v1.67.0 // indirect
 	gopkg.in/warnings.v0 v0.1.2 // indirect
 	modernc.org/gc/v3 v3.0.0-20240107210532-573471604cb6 // indirect

go.sum

@@ -45,8 +45,8 @@ cloud.google.com/go/storage v1.5.0/go.mod h1:tpKbwo567HUNpVclU5sGELwQWBDZ8gh0Zeo
 cloud.google.com/go/storage v1.6.0/go.mod h1:N7U0C8pVQ/+NIKOBQyamJIeKQKkZ+mxpohlUTyfDhBk=
 cloud.google.com/go/storage v1.8.0/go.mod h1:Wv1Oy7z6Yz3DshWRJFhqM/UCfaWIRTdp0RXyy7KQOVs=
 cloud.google.com/go/storage v1.10.0/go.mod h1:FLPqc6j+Ki4BU591ie1oL6qBQGu2Bl/tZ9ullr3+Kg0=
-dario.cat/mergo v1.0.0 h1:AGCNq9Evsj31mOgNPcLyXc+4PNABt905YmuqPYYpBWk=
-dario.cat/mergo v1.0.0/go.mod h1:uNxQE+84aUszobStD9th8a29P2fMDhsBdgRYvZOxGmk=
+dario.cat/mergo v1.0.1 h1:Ra4+bf83h2ztPIQYNP99R6m+Y7KfnARDfID+a+vLl4s=
+dario.cat/mergo v1.0.1/go.mod h1:uNxQE+84aUszobStD9th8a29P2fMDhsBdgRYvZOxGmk=
 dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU=
 github.com/AdaLogics/go-fuzz-headers v0.0.0-20230811130428-ced1acdcaa24 h1:bvDV9vkmnHYOMsOr4WLk+Vo07yKIzd94sVoIqshQ4bU=
 github.com/AdaLogics/go-fuzz-headers v0.0.0-20230811130428-ced1acdcaa24/go.mod h1:8o94RPi1/7XTJvwPpRSzSUedZrtlirdB3r9Z20bi2f8=
@@ -60,8 +60,8 @@ github.com/BurntSushi/toml v1.2.1/go.mod h1:CxXYINrC8qIiEnFrOxCa7Jy5BFHlXnUU2pbi
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@@ -213,10 +217,10 @@ github.com/cpuguy83/go-md2man/v2 v2.0.1/go.mod h1:tgQtvFlXSQOSOSIRvRPT7W67SCa46t
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@@ -227,12 +231,12 @@ github.com/deitch/magic v0.0.0-20230404182410-1ff89d7342da/go.mod h1:B3tI9iGHi4i
 github.com/dgrijalva/jwt-go/v4 v4.0.0-preview1/go.mod h1:+hnT3ywWDTAFrW5aE+u2Sa/wT555ZqwoCS+pk3p6ry4=
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@@ -277,18 +281,18 @@ github.com/fatih/set v0.2.1 h1:nn2CaJyknWE/6txyUDGwysr3G5QC6xWB/PtVjPBbeaA=
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@@ -301,8 +305,8 @@ github.com/gliderlabs/ssh v0.3.7 h1:iV3Bqi942d9huXnzEF2Mt+CY9gLu8DNM4Obd+8bODRE=
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@@ -315,8 +319,8 @@ github.com/go-kit/kit v0.9.0/go.mod h1:xBxKIO96dXMWWy0MnWVtmwkA9/13aqxPnvrjFYMA2
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@@ -361,8 +365,8 @@ github.com/golang/protobuf v1.4.3/go.mod h1:oDoupMAO8OvCJWAcko0GGGIgR6R6ocIYbsSw
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@@ -384,8 +388,8 @@ github.com/google/go-cmp v0.5.6/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/
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@@ -411,7 +415,6 @@ github.com/google/pprof v0.0.0-20211214055906-6f57359322fd/go.mod h1:KgnwoLYCZ8I
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-github.com/google/uuid v1.1.1/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo=
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@@ -463,8 +466,8 @@ github.com/hashicorp/memberlist v0.2.2/go.mod h1:MS2lj3INKhZjWNqd3N0m3J+Jxf3DAOn
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@@ -473,9 +476,6 @@ github.com/iancoleman/strcase v0.3.0/go.mod h1:iwCmte+B7n89clKwxIoIXy/HfoL7AsD47
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@@ -483,8 +483,8 @@ github.com/invopop/jsonschema v0.7.0 h1:2vgQcBz1n256N+FpX3Jq7Y17AjYt46Ig3zIWyy77
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@@ -552,9 +552,8 @@ github.com/mattn/go-isatty v0.0.20/go.mod h1:W+V8PltTTMOvKvAeJH7IuucS94S2C6jfK/D
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@@ -564,7 +563,6 @@ github.com/miekg/dns v1.0.14/go.mod h1:W1PPwlIAgtquWBMBEV9nkV9Cazfe8ScdGz/Lj7v3N
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@@ -577,7 +575,6 @@ github.com/mitchellh/mapstructure v1.1.2/go.mod h1:FVVH3fgwuzCH5S8UJGiWEs2h04kUh
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@@ -590,6 +587,10 @@ github.com/moby/sys/sequential v0.5.0 h1:OPvI35Lzn9K04PBbCLW0g4LcFAJgHsvXsRyewg5
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@@ -603,8 +604,6 @@ github.com/muesli/ansi v0.0.0-20230316100256-276c6243b2f6 h1:ZK8zHtRHOkbHy6Mmr5D
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@@ -614,16 +613,14 @@ github.com/nwaples/rardecode v1.1.0 h1:vSxaY8vQhOcVr4mm5e8XllHWTiM4JF507A0Katqw7
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@@ -633,8 +630,8 @@ github.com/pborman/indent v1.2.1/go.mod h1:FitS+t35kIYtB5xWTZAPhnmrxcciEEOdbyrrp
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@@ -666,14 +663,12 @@ github.com/prometheus/common v0.9.1/go.mod h1:yhUN8i9wzaXS3w1O07YhxHEBxD+W35wd8b
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@@ -692,8 +687,8 @@ github.com/sagikazarmark/locafero v0.4.0 h1:HApY1R9zGo4DBgr7dqsTH/JJxLTTsOt7u6ke
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@@ -703,21 +698,20 @@ github.com/sassoftware/go-rpmutils v0.4.0/go.mod h1:3goNWi7PGAT3/dlql2lv3+MSN5jN
 github.com/scylladb/go-set v1.0.3-0.20200225121959-cc7b2070d91e h1:7q6NSFZDeGfvvtIRwBrU/aegEYJYmvev0cHAwo17zZQ=
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 github.com/sean-/seed v0.0.0-20170313163322-e2103e2c3529/go.mod h1:DxrIzT+xaE7yg65j358z/aeFdxmN0P9QXhEzd20vsDc=
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 github.com/shurcooL/sanitized_anchor_name v1.0.0/go.mod h1:1NzhyTcUVG4SuEtjjoZeVRXNmyL/1OwPU0+IJeTBvfc=
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 github.com/sirupsen/logrus v1.7.0/go.mod h1:yWOB1SBYBC5VeMP7gHvWumXLIWorT60ONWic61uBYv0=
-github.com/sirupsen/logrus v1.8.1/go.mod h1:yWOB1SBYBC5VeMP7gHvWumXLIWorT60ONWic61uBYv0=
 github.com/sirupsen/logrus v1.9.0/go.mod h1:naHLuLoDiP4jHNo9R0sCBMtWGeIprob74mVsIT4qYEQ=
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@@ -733,10 +727,9 @@ github.com/spf13/afero v1.3.3/go.mod h1:5KUK8ByomD5Ti5Artl0RtHeI5pTF7MIDuXL3yY52
 github.com/spf13/afero v1.6.0/go.mod h1:Ai8FlHk4v/PARR026UzYexafAt9roJ7LcLMAmO6Z93I=
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 github.com/spf13/afero v1.11.0/go.mod h1:GH9Y3pIexgf1MTIWtNGyogA5MwRIDXGUr+hbWNoBjkY=
-github.com/spf13/cast v1.3.1/go.mod h1:Qx5cxh0v+4UWYiBimWS+eyWzqEqokIECu5etghLkUJE=
 github.com/spf13/cast v1.4.1/go.mod h1:Qx5cxh0v+4UWYiBimWS+eyWzqEqokIECu5etghLkUJE=
-github.com/spf13/cast v1.6.0 h1:GEiTHELF+vaR5dhz3VqZfFSzZjYbgeKDpBxQVS4GYJ0=
-github.com/spf13/cast v1.6.0/go.mod h1:ancEpBxwJDODSW/UG4rDrAqiKolqNNh2DX3mk86cAdo=
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 github.com/spf13/cobra v1.8.1/go.mod h1:wHxEcudfqmLYa8iTfL+OuZPbBZkmvliBWKIezN3kD9Y=
@@ -744,8 +737,8 @@ github.com/spf13/jwalterweatherman v1.1.0/go.mod h1:aNWZUN0dPAAO/Ljvb5BEdw96iTZ0
 github.com/spf13/pflag v1.0.5 h1:iy+VFUOCP1a+8yFto/drg2CJ5u0yRoB7fZw3DKv/JXA=
 github.com/spf13/pflag v1.0.5/go.mod h1:McXfInJRrz4CZXVZOBLb0bTZqETkiAhM9Iw0y3An2Bg=
 github.com/spf13/viper v1.10.0/go.mod h1:SoyBPwAtKDzypXNDFKN5kzH7ppppbGZtls1UpIy5AsM=
-github.com/spf13/viper v1.18.2 h1:LUXCnvUvSM6FXAsj6nnfc8Q2tp1dIgUfY9Kc8GsSOiQ=
-github.com/spf13/viper v1.18.2/go.mod h1:EKmWIqdnk5lOcmR72yw6hS+8OPYcwD0jteitLMVB+yk=
+github.com/spf13/viper v1.19.0 h1:RWq5SEjt8o25SROyN3z2OrDB9l7RPd3lwTWU8EcEdcI=
+github.com/spf13/viper v1.19.0/go.mod h1:GQUN9bilAbhU/jgc1bKs99f/suXKeUMct8Adx5+Ntkg=
 github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
 github.com/stretchr/objx v0.1.1/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
 github.com/stretchr/objx v0.4.0/go.mod h1:YvHI0jy2hoMjB+UWwv71VJQ9isScKT/TqJzVSSt89Yw=
@@ -769,8 +762,8 @@ github.com/stretchr/testify v1.9.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8
 github.com/subosito/gotenv v1.2.0/go.mod h1:N0PQaV/YGNqwC0u51sEeR/aUtSLEXKX9iv69rRypqCw=
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 github.com/subosito/gotenv v1.6.0/go.mod h1:Dk4QP5c2W3ibzajGcXpNraDfq2IrhjMIvMSWPKKo0FU=
-github.com/sylabs/sif/v2 v2.17.1 h1:p6Sl0LWyShXBj2SBsS1dMOMIMrZHe8pwBnBrYt6uo4M=
-github.com/sylabs/sif/v2 v2.17.1/go.mod h1:XUGB6AQUXGkms3qPOPdevctT3lBLRLWZNWHVnt5HMKE=
+github.com/sylabs/sif/v2 v2.19.2 h1:KKcUKnbnT69rN1WWHRYoAVKFpqnXpNJ36kmQLpp86Uc=
+github.com/sylabs/sif/v2 v2.19.2/go.mod h1:nhX6D/CJntHDWspNLXLe+yct0cd5lm8HJ7VIW6hgKrw=
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 github.com/terminalstatic/go-xsd-validate v0.1.5 h1:RqpJnf6HGE2CB/lZB1A8BYguk8uRtcvYAPLCF15qguo=
@@ -837,20 +830,20 @@ go.opencensus.io v0.22.5/go.mod h1:5pWMHQbX5EPX2/62yrJeAkowc+lfs/XD7Uxpq3pI6kk=
 go.opencensus.io v0.23.0/go.mod h1:XItmlyltB5F7CS4xOC1DcqMoFqwtC6OG2xF7mCv7P7E=
 go.opencensus.io v0.24.0 h1:y73uSU6J157QMP2kn2r30vwW1A2W2WFwSCGnAVxeaD0=
 go.opencensus.io v0.24.0/go.mod h1:vNK8G9p7aAivkbmorf4v+7Hgx+Zs0yY+0fOtgBfjQKo=
-go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.45.0 h1:x8Z78aZx8cOF0+Kkazoc7lwUNMGy0LrzEMxTm4BbTxg=
-go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.45.0/go.mod h1:62CPTSry9QZtOaSsE3tOzhx6LzDhHnXJ6xHeMNNiM6Q=
-go.opentelemetry.io/otel v1.19.0 h1:MuS/TNf4/j4IXsZuJegVzI1cwut7Qc00344rgH7p8bs=
-go.opentelemetry.io/otel v1.19.0/go.mod h1:i0QyjOq3UPoTzff0PJB2N66fb4S0+rSbSB15/oyH9fY=
+go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.49.0 h1:jq9TW8u3so/bN+JPT166wjOI6/vQPF6Xe7nMNIltagk=
+go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.49.0/go.mod h1:p8pYQP+m5XfbZm9fxtSKAbM6oIllS7s2AfxrChvc7iw=
+go.opentelemetry.io/otel v1.24.0 h1:0LAOdjNmQeSTzGBzduGe/rU4tZhMwL5rWgtp9Ku5Jfo=
+go.opentelemetry.io/otel v1.24.0/go.mod h1:W7b9Ozg4nkF5tWI5zsXkaKKDjdVjpD4oAt9Qi/MArHo=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.19.0 h1:Mne5On7VWdx7omSrSSZvM4Kw7cS7NQkOOmLcgscI51U=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.19.0/go.mod h1:IPtUMKL4O3tH5y+iXVyAXqpAwMuzC1IrxVS81rummfE=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.19.0 h1:IeMeyr1aBvBiPVYihXIaeIZba6b8E1bYp7lbdxK8CQg=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.19.0/go.mod h1:oVdCUtjq9MK9BlS7TtucsQwUcXcymNiEDjgDD2jMtZU=
-go.opentelemetry.io/otel/metric v1.19.0 h1:aTzpGtV0ar9wlV4Sna9sdJyII5jTVJEvKETPiOKwvpE=
-go.opentelemetry.io/otel/metric v1.19.0/go.mod h1:L5rUsV9kM1IxCj1MmSdS+JQAcVm319EUrDVLrt7jqt8=
-go.opentelemetry.io/otel/sdk v1.19.0 h1:6USY6zH+L8uMH8L3t1enZPR3WFEmSTADlqldyHtJi3o=
-go.opentelemetry.io/otel/sdk v1.19.0/go.mod h1:NedEbbS4w3C6zElbLdPJKOpJQOrGUJ+GfzpjUvI0v1A=
-go.opentelemetry.io/otel/trace v1.19.0 h1:DFVQmlVbfVeOuBRrwdtaehRrWiL1JoVs9CPIQ1Dzxpg=
-go.opentelemetry.io/otel/trace v1.19.0/go.mod h1:mfaSyvGyEJEI0nyV2I4qhNQnbBOUUmYZpYojqMnX2vo=
+go.opentelemetry.io/otel/metric v1.24.0 h1:6EhoGWWK28x1fbpA4tYTOWBkPefTDQnb8WSGXlc88kI=
+go.opentelemetry.io/otel/metric v1.24.0/go.mod h1:VYhLe1rFfxuTXLgj4CBiyz+9WYBA8pNGJgDcSFRKBco=
+go.opentelemetry.io/otel/sdk v1.21.0 h1:FTt8qirL1EysG6sTQRZ5TokkU8d0ugCj8htOgThZXQ8=
+go.opentelemetry.io/otel/sdk v1.21.0/go.mod h1:Nna6Yv7PWTdgJHVRD9hIYywQBRx7pbox6nwBnZIxl/E=
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+go.opentelemetry.io/otel/trace v1.24.0/go.mod h1:HPc3Xr/cOApsBI154IU0OI0HJexz+aw5uPdbs3UCjNU=
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@@ -875,11 +868,10 @@ golang.org/x/crypto v0.0.0-20200622213623-75b288015ac9/go.mod h1:LzIPMQfyMNhhGPh
 golang.org/x/crypto v0.0.0-20210817164053-32db794688a5/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc=
 golang.org/x/crypto v0.0.0-20210921155107-089bfa567519/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc=
 golang.org/x/crypto v0.0.0-20220622213112-05595931fe9d/go.mod h1:IxCIyHEi3zRg3s0A5j5BB6A9Jmi73HwBIUl50j+osU4=
-golang.org/x/crypto v0.3.0/go.mod h1:hebNnKkNXi2UzZN1eVRvBB7co0a+JxK6XbPiWVs/3J4=
 golang.org/x/crypto v0.3.1-0.20221117191849-2c476679df9a/go.mod h1:hebNnKkNXi2UzZN1eVRvBB7co0a+JxK6XbPiWVs/3J4=
 golang.org/x/crypto v0.7.0/go.mod h1:pYwdfH91IfpZVANVyUOhSIPZaFoJGxTFbZhFTx+dXZU=
-golang.org/x/crypto v0.25.0 h1:ypSNr+bnYL2YhwoMt2zPxHFmbAN1KZs/njMG3hxUp30=
-golang.org/x/crypto v0.25.0/go.mod h1:T+wALwcMOSE0kXgUAnPAHqTLW+XHgcELELW8VaDgm/M=
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+golang.org/x/crypto v0.28.0/go.mod h1:rmgy+3RHxRZMyY0jjAJShp2zgEdOqj2AO7U0pYmeQ7U=
 golang.org/x/exp v0.0.0-20190121172915-509febef88a4/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=
 golang.org/x/exp v0.0.0-20190306152737-a1d7652674e8/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=
 golang.org/x/exp v0.0.0-20190510132918-efd6b22b2522/go.mod h1:ZjyILWgesfNpC6sMxTJOJm9Kp84zZh5NQWvqDGG3Qr8=
@@ -890,8 +882,8 @@ golang.org/x/exp v0.0.0-20191227195350-da58074b4299/go.mod h1:2RIsYlXP63K8oxa1u0
 golang.org/x/exp v0.0.0-20200119233911-0405dc783f0a/go.mod h1:2RIsYlXP63K8oxa1u096TMicItID8zy7Y6sNkU49FU4=
 golang.org/x/exp v0.0.0-20200207192155-f17229e696bd/go.mod h1:J/WKrq2StrnmMY6+EHIKF9dgMWnmCNThgcyBT1FY9mM=
 golang.org/x/exp v0.0.0-20200224162631-6cc2880d07d6/go.mod h1:3jZMyOhIsHpP37uCMkUooju7aAi5cS1Q23tOzKc+0MU=
-golang.org/x/exp v0.0.0-20231108232855-2478ac86f678 h1:mchzmB1XO2pMaKFRqk/+MV3mgGG96aqaPXaMifQU47w=
-golang.org/x/exp v0.0.0-20231108232855-2478ac86f678/go.mod h1:zk2irFbV9DP96SEBUUAy67IdHUaZuSnrz1n472HUCLE=
+golang.org/x/exp v0.0.0-20240719175910-8a7402abbf56 h1:2dVuKD2vS7b0QIHQbpyTISPd0LeHDbnYEryqj5Q1ug8=
+golang.org/x/exp v0.0.0-20240719175910-8a7402abbf56/go.mod h1:M4RDyNAINzryxdtnbRXRL/OHtkFuWGRjvuhBJpk2IlY=
 golang.org/x/image v0.0.0-20190227222117-0694c2d4d067/go.mod h1:kZ7UVZpmo3dzQBMxlp+ypCbDeSB+sBbTgSJuh5dn5js=
 golang.org/x/image v0.0.0-20190802002840-cff245a6509b/go.mod h1:FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0=
 golang.org/x/lint v0.0.0-20181026193005-c67002cb31c3/go.mod h1:UVdnD1Gm6xHRNCYTkRU2/jEulfH38KcIWyp/GAMgvoE=
@@ -920,8 +912,8 @@ golang.org/x/mod v0.4.2/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
 golang.org/x/mod v0.5.0/go.mod h1:5OXOZSfqPIIbmVBIIKWRFfZjPR0E5r58TLhUjH0a2Ro=
 golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4/go.mod h1:jJ57K6gSWd91VN4djpZkiMVwK6gcyfeH4XE8wZrZaV4=
 golang.org/x/mod v0.8.0/go.mod h1:iBbtSCu2XBx23ZKBPSOrRkjjQPZFPuis4dIYUhu/chs=
-golang.org/x/mod v0.20.0 h1:utOm6MM3R3dnawAiJgn0y+xvuYRsm1RKM/4giyfDgV0=
-golang.org/x/mod v0.20.0/go.mod h1:hTbmBsO62+eylJbnUtE2MGJUyE7QWk4xUqPFrRgJ+7c=
+golang.org/x/mod v0.21.0 h1:vvrHzRwRfVKSiLrG+d4FMl/Qi4ukBCE6kZlTUkDYRT0=
+golang.org/x/mod v0.21.0/go.mod h1:6SkKJ3Xj0I0BrPOZoBy3bdMptDDU9oJrpohJ3eWZ1fY=
 golang.org/x/net v0.0.0-20180724234803-3673e40ba225/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=
 golang.org/x/net v0.0.0-20180826012351-8a410e7b638d/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=
 golang.org/x/net v0.0.0-20181023162649-9b4f9f5ad519/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=
@@ -968,8 +960,8 @@ golang.org/x/net v0.0.0-20220722155237-a158d28d115b/go.mod h1:XRhObCWvk6IyKnWLug
 golang.org/x/net v0.2.0/go.mod h1:KqCZLdyyvdV855qA2rE3GC2aiw5xGR5TEjj8smXukLY=
 golang.org/x/net v0.6.0/go.mod h1:2Tu9+aMcznHK/AK1HMvgo6xiTLG5rD5rZLDS+rp2Bjs=
 golang.org/x/net v0.8.0/go.mod h1:QVkue5JL9kW//ek3r6jTKnTFis1tRmNAW2P1shuFdJc=
-golang.org/x/net v0.27.0 h1:5K3Njcw06/l2y9vpGCSdcxWOYHOUk3dVNGDXN+FvAys=
-golang.org/x/net v0.27.0/go.mod h1:dDi0PyhWNoiUOrAS8uXv/vnScO4wnHQO4mj9fn/RytE=
+golang.org/x/net v0.30.0 h1:AcW1SDZMkb8IpzCdQUaIq2sP4sZ4zw+55h6ynffypl4=
+golang.org/x/net v0.30.0/go.mod h1:2wGyMJ5iFasEhkwi13ChkO/t1ECNC4X4eBKkVFyYFlU=
 golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
 golang.org/x/oauth2 v0.0.0-20190226205417-e64efc72b421/go.mod h1:gOpvHmFTYa4IltrdGE7lF6nIHvwfUNPOp7c8zoXwtLw=
 golang.org/x/oauth2 v0.0.0-20190604053449-0f29369cfe45/go.mod h1:gOpvHmFTYa4IltrdGE7lF6nIHvwfUNPOp7c8zoXwtLw=
@@ -1000,8 +992,8 @@ golang.org/x/sync v0.0.0-20201207232520-09787c993a3a/go.mod h1:RxMgew5VJxzue5/jJ
 golang.org/x/sync v0.0.0-20210220032951-036812b2e83c/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20220722155255-886fb9371eb4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.1.0/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
-golang.org/x/sync v0.7.0 h1:YsImfSBoP9QPYL0xyKJPq0gcaJdG3rInoqxTWbfQu9M=
-golang.org/x/sync v0.7.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk=
+golang.org/x/sync v0.8.0 h1:3NFvSEYkUoMifnESzZl15y791HH1qU2xm6eCJU5ZPXQ=
+golang.org/x/sync v0.8.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk=
 golang.org/x/sys v0.0.0-20180823144017-11551d06cbcc/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
 golang.org/x/sys v0.0.0-20180830151530-49385e6e1522/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
 golang.org/x/sys v0.0.0-20180905080454-ebe1bf3edb33/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
@@ -1076,20 +1068,19 @@ golang.org/x/sys v0.0.0-20220715151400-c0bba94af5f8/go.mod h1:oPkhp1MJrh7nUepCBc
 golang.org/x/sys v0.0.0-20220722155257-8c9f86f7a55f/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.0.0-20220811171246-fbc7d0a398ab/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.0.0-20220906165534-d0df966e6959/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.1.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.2.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.3.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.5.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.22.0 h1:RI27ohtqKCnwULzJLqkv897zojh5/DwS/ENaMzUOaWI=
-golang.org/x/sys v0.22.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
+golang.org/x/sys v0.26.0 h1:KHjCJyddX0LoSTb3J+vWpupP9p0oznkqVk/IfjymZbo=
+golang.org/x/sys v0.26.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
 golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo=
 golang.org/x/term v0.0.0-20210927222741-03fcf44c2211/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8=
 golang.org/x/term v0.2.0/go.mod h1:TVmDHMZPmdnySmBfhjOoOdhjzdE1h4u1VwSiw2l1Nuc=
 golang.org/x/term v0.5.0/go.mod h1:jMB1sMXY+tzblOD4FWmEbocvup2/aLOaQEp7JmGp78k=
 golang.org/x/term v0.6.0/go.mod h1:m6U89DPEgQRMq3DNkDClhWw02AUbt2daBVO4cn4Hv9U=
-golang.org/x/term v0.22.0 h1:BbsgPEJULsl2fV/AT3v15Mjva5yXKQDyKf+TbDz7QJk=
-golang.org/x/term v0.22.0/go.mod h1:F3qCibpT5AMpCRfhfT53vVJwhLtIVHhB9XDjfFvnMI4=
+golang.org/x/term v0.25.0 h1:WtHI/ltw4NvSUig5KARz9h521QvRC8RmF/cuYqifU24=
+golang.org/x/term v0.25.0/go.mod h1:RPyXicDX+6vLxogjjRxjgD2TKtmAO6NZBsBRfrOLu7M=
 golang.org/x/text v0.0.0-20170915032832-14c0d48ead0c/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
 golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
 golang.org/x/text v0.3.1-0.20180807135948-17ff2d5776d2/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
@@ -1102,8 +1093,8 @@ golang.org/x/text v0.3.7/go.mod h1:u+2+/6zg+i71rQMx5EYifcz6MCKuco9NR6JIITiCfzQ=
 golang.org/x/text v0.4.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8=
 golang.org/x/text v0.7.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8=
 golang.org/x/text v0.8.0/go.mod h1:e1OnstbJyHTd6l/uOt8jFFHp6TRDWZR/bV3emEE/zU8=
-golang.org/x/text v0.16.0 h1:a94ExnEXNtEwYLGJSIUxnWoxoRz/ZcCsV63ROupILh4=
-golang.org/x/text v0.16.0/go.mod h1:GhwF1Be+LQoKShO3cGOHzqOgRrGaYc9AvblQOmPVHnI=
+golang.org/x/text v0.19.0 h1:kTxAhCbGbxhK0IwgSKiMO5awPoDQ0RpfiVYBfK860YM=
+golang.org/x/text v0.19.0/go.mod h1:BuEKDfySbSR4drPmRPG/7iBdf8hvFMuRexcpahXilzY=
 golang.org/x/time v0.0.0-20181108054448-85acf8d2951c/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
 golang.org/x/time v0.0.0-20190308202827-9d24e82272b4/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
 golang.org/x/time v0.0.0-20191024005414-555d28b269f0/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
@@ -1165,8 +1156,8 @@ golang.org/x/tools v0.1.4/go.mod h1:o0xws9oXOQQZyjljx8fwUC0k7L1pTE6eaCbjGeHmOkk=
 golang.org/x/tools v0.1.5/go.mod h1:o0xws9oXOQQZyjljx8fwUC0k7L1pTE6eaCbjGeHmOkk=
 golang.org/x/tools v0.1.12/go.mod h1:hNGJHUnrk76NpqgfD5Aqm5Crs+Hm0VOH/i9J2+nxYbc=
 golang.org/x/tools v0.6.0/go.mod h1:Xwgl3UAJ/d3gWutnCtw505GrjyAbvKui8lOU390QaIU=
-golang.org/x/tools v0.21.1-0.20240508182429-e35e4ccd0d2d h1:vU5i/LfpvrRCpgM/VPfJLg5KjxD3E+hfT1SH+d9zLwg=
-golang.org/x/tools v0.21.1-0.20240508182429-e35e4ccd0d2d/go.mod h1:aiJjzUbINMkxbQROHiO6hDPo2LHcIPhhQsa9DLh0yGk=
+golang.org/x/tools v0.23.0 h1:SGsXPZ+2l4JsgaCKkx+FQ9YZ5XEtA1GZYuoDjenLjvg=
+golang.org/x/tools v0.23.0/go.mod h1:pnu6ufv6vQkll6szChhK3C3L/ruaIv5eBeztNG8wtsI=
 golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 golang.org/x/xerrors v0.0.0-20191204190536-9bdfabe68543/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
@@ -1275,12 +1266,12 @@ google.golang.org/genproto v0.0.0-20211129164237-f09f9a12af12/go.mod h1:5CzLGKJ6
 google.golang.org/genproto v0.0.0-20211203200212-54befc351ae9/go.mod h1:5CzLGKJ67TSI2B9POpiiyGha0AjJvZIUgRMt1dSmuhc=
 google.golang.org/genproto v0.0.0-20211206160659-862468c7d6e0/go.mod h1:5CzLGKJ67TSI2B9POpiiyGha0AjJvZIUgRMt1dSmuhc=
 google.golang.org/genproto v0.0.0-20211208223120-3a66f561d7aa/go.mod h1:5CzLGKJ67TSI2B9POpiiyGha0AjJvZIUgRMt1dSmuhc=
-google.golang.org/genproto v0.0.0-20231106174013-bbf56f31fb17 h1:wpZ8pe2x1Q3f2KyT5f8oP/fa9rHAKgFPr/HZdNuS+PQ=
-google.golang.org/genproto v0.0.0-20231106174013-bbf56f31fb17/go.mod h1:J7XzRzVy1+IPwWHZUzoD0IccYZIrXILAQpc+Qy9CMhY=
-google.golang.org/genproto/googleapis/api v0.0.0-20231106174013-bbf56f31fb17 h1:JpwMPBpFN3uKhdaekDpiNlImDdkUAyiJ6ez/uxGaUSo=
-google.golang.org/genproto/googleapis/api v0.0.0-20231106174013-bbf56f31fb17/go.mod h1:0xJLfVdJqpAPl8tDg1ujOCGzx6LFLttXT5NhllGOXY4=
-google.golang.org/genproto/googleapis/rpc v0.0.0-20231120223509-83a465c0220f h1:ultW7fxlIvee4HYrtnaRPon9HpEgFk5zYpmfMgtKB5I=
-google.golang.org/genproto/googleapis/rpc v0.0.0-20231120223509-83a465c0220f/go.mod h1:L9KNLi232K1/xB6f7AlSX692koaRnKaWSR0stBki0Yc=
+google.golang.org/genproto v0.0.0-20240213162025-012b6fc9bca9 h1:9+tzLLstTlPTRyJTh+ah5wIMsBW5c4tQwGTN3thOW9Y=
+google.golang.org/genproto v0.0.0-20240213162025-012b6fc9bca9/go.mod h1:mqHbVIp48Muh7Ywss/AD6I5kNVKZMmAa/QEW58Gxp2s=
+google.golang.org/genproto/googleapis/api v0.0.0-20240311132316-a219d84964c2 h1:rIo7ocm2roD9DcFIX67Ym8icoGCKSARAiPljFhh5suQ=
+google.golang.org/genproto/googleapis/api v0.0.0-20240311132316-a219d84964c2/go.mod h1:O1cOfN1Cy6QEYr7VxtjOyP5AdAuR0aJ/MYZaaof623Y=
+google.golang.org/genproto/googleapis/rpc v0.0.0-20240314234333-6e1732d8331c h1:lfpJ/2rWPa/kJgxyyXM8PrNnfCzcmxJ265mADgwmvLI=
+google.golang.org/genproto/googleapis/rpc v0.0.0-20240314234333-6e1732d8331c/go.mod h1:WtryC6hu0hhx87FDGxWCDptyssuo68sk10vYjF+T9fY=
 google.golang.org/grpc v1.19.0/go.mod h1:mqu4LbDTu4XGKhr4mRzUsmM4RtVoemTSY81AxZiDr8c=
 google.golang.org/grpc v1.20.1/go.mod h1:10oTOabMzJvdu6/UiuZezV6QK5dSlG84ov/aaiqXj38=
 google.golang.org/grpc v1.21.1/go.mod h1:oYelfM1adQP15Ek0mdvEgi9Df8B9CZIaU1084ijfRaM=
@@ -1308,8 +1299,8 @@ google.golang.org/grpc v1.39.1/go.mod h1:PImNr+rS9TWYb2O4/emRugxiyHZ5JyHW5F+RPnD
 google.golang.org/grpc v1.40.0/go.mod h1:ogyxbiOoUXAkP+4+xa6PZSE9DZgIHtSpzjDTB9KAK34=
 google.golang.org/grpc v1.40.1/go.mod h1:ogyxbiOoUXAkP+4+xa6PZSE9DZgIHtSpzjDTB9KAK34=
 google.golang.org/grpc v1.42.0/go.mod h1:k+4IHHFw41K8+bbowsex27ge2rCb65oeWqe4jJ590SU=
-google.golang.org/grpc v1.59.0 h1:Z5Iec2pjwb+LEOqzpB2MR12/eKFhDPhuqW91O+4bwUk=
-google.golang.org/grpc v1.59.0/go.mod h1:aUPDwccQo6OTjy7Hct4AfBPD1GptF4fyUjIkQ9YtF98=
+google.golang.org/grpc v1.62.1 h1:B4n+nfKzOICUXMgyrNd19h/I9oH0L1pizfk1d4zSgTk=
+google.golang.org/grpc v1.62.1/go.mod h1:IWTG0VlJLCh1SkC58F7np9ka9mx/WNkjl4PGJaiq+QE=
 google.golang.org/grpc/cmd/protoc-gen-go-grpc v1.1.0/go.mod h1:6Kw0yEErY5E/yWrBtf03jp27GLLJujG4z/JK95pnjjw=
 google.golang.org/protobuf v0.0.0-20200109180630-ec00e32a8dfd/go.mod h1:DFci5gLYBciE7Vtevhsrf46CRTquxDuWsQurQQe4oz8=
 google.golang.org/protobuf v0.0.0-20200221191635-4d8936d0db64/go.mod h1:kwYJMbMJ01Woi6D6+Kah6886xMZcty6N08ah7+eCXa0=
@@ -1324,8 +1315,8 @@ google.golang.org/protobuf v1.25.0/go.mod h1:9JNX74DMeImyA3h4bdi1ymwjUzf21/xIlba
 google.golang.org/protobuf v1.26.0-rc.1/go.mod h1:jlhhOSvTdKEhbULTjvd4ARK9grFBp09yW+WbY/TyQbw=
 google.golang.org/protobuf v1.26.0/go.mod h1:9q0QmTI4eRPtz6boOQmLYwt+qCgq0jsYwAQnmE0givc=
 google.golang.org/protobuf v1.27.1/go.mod h1:9q0QmTI4eRPtz6boOQmLYwt+qCgq0jsYwAQnmE0givc=
-google.golang.org/protobuf v1.33.0 h1:uNO2rsAINq/JlFpSdYEKIZ0uKD/R9cpdv0T+yoGwGmI=
-google.golang.org/protobuf v1.33.0/go.mod h1:c6P6GXX6sHbq/GpV6MGZEdwhWPcYBgnhAHhKbcUYpos=
+google.golang.org/protobuf v1.34.2 h1:6xV6lTsCfpGD21XK49h7MhtcApnLqkfYgPcdHftf6hg=
+google.golang.org/protobuf v1.34.2/go.mod h1:qYOHts0dSfpeUzUFpOMr/WGzszTmLH+DiWniOlNbLDw=
 gopkg.in/alecthomas/kingpin.v2 v2.2.6/go.mod h1:FMv+mEhP44yOT+4EoQTLFTRgOQ1FBLkstjWtayDeSgw=
 gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
 gopkg.in/check.v1 v1.0.0-20180628173108-788fd7840127/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
@@ -1344,7 +1335,6 @@ gopkg.in/yaml.v2 v2.2.3/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.4/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.5/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.8/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
-gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.4.0/go.mod h1:RDklbk79AGWmwhnvt/jBztapEOGDOx6ZbXqjP6csGnQ=
 gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
@@ -1379,8 +1369,8 @@ modernc.org/opt v0.1.3 h1:3XOZf2yznlhC+ibLltsDGzABUGVx8J6pnFMS3E4dcq4=
 modernc.org/opt v0.1.3/go.mod h1:WdSiB5evDcignE70guQKxYUl14mgWtbClRi5wmkkTX0=
 modernc.org/sortutil v1.2.0 h1:jQiD3PfS2REGJNzNCMMaLSp/wdMNieTbKX920Cqdgqc=
 modernc.org/sortutil v1.2.0/go.mod h1:TKU2s7kJMf1AE84OoiGppNHJwvB753OYfNl2WRb++Ss=
-modernc.org/sqlite v1.31.1 h1:XVU0VyzxrYHlBhIs1DiEgSl0ZtdnPtbLVy8hSkzxGrs=
-modernc.org/sqlite v1.31.1/go.mod h1:UqoylwmTb9F+IqXERT8bW9zzOWN8qwAIcLdzeBZs4hA=
+modernc.org/sqlite v1.33.1 h1:trb6Z3YYoeM9eDL1O8do81kP+0ejv+YzgyFo+Gwy0nM=
+modernc.org/sqlite v1.33.1/go.mod h1:pXV2xHxhzXZsgT/RtTFAPY6JJDEvOTcTdwADQCCWD4k=
 modernc.org/strutil v1.2.0 h1:agBi9dp1I+eOnxXeiZawM8F4LawKv4NzGWSaLfyeNZA=
 modernc.org/strutil v1.2.0/go.mod h1:/mdcBmfOibveCTBxUl5B5l6W+TTH1FXPLHZE6bTosX0=
 modernc.org/token v1.1.0 h1:Xl7Ap9dKaEs5kLoOQeQmPWevfnk/DM5qcLcYlA8ys6Y=

internal/cache/README.md

@@ -1,6 +1,6 @@
 # Caching
 
-All caches are created from a global `manager`. By defaut this is a `bypassedCache`, which performs no caching.
+All caches are created from a global `manager`. By default this is a `bypassedCache`, which performs no caching.
 One benefit of this is that tests don't need to worry about caching causing issues unless they explicitly need
 to test the cache and can opt-in using the `cache.TestCache(t)` helper.
 

internal/cache/error_resolver.go

@@ -34,7 +34,7 @@ func (r *errorResolver[T]) Resolve(key string, resolver resolverFunc[T]) (T, err
 		return v.Value, err
 	}
 	if v.Error != "" {
-		return v.Value, fmt.Errorf(v.Error)
+		return v.Value, fmt.Errorf("failed to resolve cache: %s", v.Error)
 	}
 	return v.Value, nil
 }

internal/constants.go

@@ -3,5 +3,5 @@ package internal
 const (
 	// JSONSchemaVersion is the current schema version output by the JSON encoder
 	// This is roughly following the "SchemaVer" guidelines for versioning the JSON schema. Please see schema/json/README.md for details on how to increment.
-	JSONSchemaVersion = "16.0.15"
+	JSONSchemaVersion = "16.0.18"
 )

internal/file/zip_file_manifest.go

@@ -1,7 +1,6 @@
 package file
 
 import (
-	"fmt"
 	"os"
 	"sort"
 	"strings"
@@ -19,12 +18,13 @@ func NewZipFileManifest(archivePath string) (ZipFileManifest, error) {
 	zipReader, err := OpenZip(archivePath)
 	manifest := make(ZipFileManifest)
 	if err != nil {
-		return manifest, fmt.Errorf("unable to open zip archive (%s): %w", archivePath, err)
+		log.Debugf("unable to open zip archive (%s): %v", archivePath, err)
+		return manifest, err
 	}
 	defer func() {
 		err = zipReader.Close()
 		if err != nil {
-			log.Warnf("unable to close zip archive (%s): %+v", archivePath, err)
+			log.Debugf("unable to close zip archive (%s): %+v", archivePath, err)
 		}
 	}()
 

internal/file/zip_read_closer.go

@@ -6,7 +6,10 @@ import (
 	"errors"
 	"fmt"
 	"io"
+	"math"
 	"os"
+
+	"github.com/anchore/syft/internal/log"
 )
 
 // directoryEndLen, readByf, directoryEnd, and findSignatureInBlock were copied from the golang stdlib, specifically:
@@ -45,18 +48,25 @@ func OpenZip(filepath string) (*ZipReadCloser, error) {
 	// need to find the start of the archive and keep track of this offset.
 	offset, err := findArchiveStartOffset(f, fi.Size())
 	if err != nil {
-		return nil, fmt.Errorf("cannot find beginning of zip archive=%q : %w", filepath, err)
+		log.Debugf("cannot find beginning of zip archive=%q : %v", filepath, err)
+		return nil, err
 	}
 
 	if _, err := f.Seek(0, io.SeekStart); err != nil {
 		return nil, fmt.Errorf("unable to seek to beginning of archive: %w", err)
 	}
 
-	size := fi.Size() - int64(offset)
+	if offset > math.MaxInt64 {
+		return nil, fmt.Errorf("archive start offset too large: %v", offset)
+	}
+	offset64 := int64(offset)
 
-	r, err := zip.NewReader(io.NewSectionReader(f, int64(offset), size), size)
+	size := fi.Size() - offset64
+
+	r, err := zip.NewReader(io.NewSectionReader(f, offset64, size), size)
 	if err != nil {
-		return nil, fmt.Errorf("unable to open ZipReadCloser @ %q: %w", filepath, err)
+		log.Debugf("unable to open ZipReadCloser @ %q: %v", filepath, err)
+		return nil, err
 	}
 
 	return &ZipReadCloser{
@@ -95,8 +105,6 @@ type directoryEnd struct {
 }
 
 // note: this is derived from readDirectoryEnd within the archive/zip package
-//
-//nolint:gocognit
 func findArchiveStartOffset(r io.ReaderAt, size int64) (startOfArchive uint64, err error) {
 	// look for directoryEndSignature in the last 1k, then in the last 65k
 	var buf []byte
@@ -150,7 +158,7 @@ func findArchiveStartOffset(r io.ReaderAt, size int64) (startOfArchive uint64, e
 	startOfArchive = uint64(directoryEndOffset) - d.directorySize - d.directoryOffset
 
 	// Make sure directoryOffset points to somewhere in our file.
-	if o := int64(d.directoryOffset); o < 0 || o >= size {
+	if d.directoryOffset >= uint64(size) {
 		return 0, zip.ErrFormat
 	}
 	return startOfArchive, nil

internal/licenses/context.go

@@ -0,0 +1,18 @@
+package licenses
+
+import (
+	"context"
+)
+
+type licenseScannerKey struct{}
+
+func SetContextLicenseScanner(ctx context.Context, s Scanner) context.Context {
+	return context.WithValue(ctx, licenseScannerKey{}, s)
+}
+
+func ContextLicenseScanner(ctx context.Context) Scanner {
+	if s, ok := ctx.Value(licenseScannerKey{}).(Scanner); ok {
+		return s
+	}
+	return NewDefaultScanner()
+}

internal/licenses/parser.go

@@ -1,39 +0,0 @@
-package licenses
-
-import (
-	"io"
-
-	"github.com/google/licensecheck"
-
-	"github.com/anchore/syft/syft/file"
-	"github.com/anchore/syft/syft/license"
-	"github.com/anchore/syft/syft/pkg"
-)
-
-const (
-	coverageThreshold  = 75
-	unknownLicenseType = "UNKNOWN"
-)
-
-// Parse scans the contents of a license file to attempt to determine the type of license it is
-func Parse(reader io.Reader, l file.Location) (licenses []pkg.License, err error) {
-	licenses = make([]pkg.License, 0)
-	contents, err := io.ReadAll(reader)
-	if err != nil {
-		return nil, err
-	}
-	cov := licensecheck.Scan(contents)
-	if cov.Percent < coverageThreshold {
-		// unknown or no licenses here?
-		return licenses, nil
-	}
-
-	for _, m := range cov.Match {
-		lic := pkg.NewLicenseFromLocations(m.ID, l)
-		lic.Type = license.Concluded
-
-		licenses = append(licenses, lic)
-	}
-
-	return licenses, nil
-}

internal/licenses/scanner.go

@@ -0,0 +1,68 @@
+package licenses
+
+import (
+	"context"
+	"io"
+
+	"github.com/google/licensecheck"
+
+	"github.com/anchore/syft/internal/log"
+)
+
+const coverageThreshold = 75 // determined by experimentation
+
+type Scanner interface {
+	IdentifyLicenseIDs(context.Context, io.Reader) ([]string, error)
+}
+
+var _ Scanner = (*scanner)(nil)
+
+type scanner struct {
+	coverageThreshold float64 // between 0 and 100
+	scanner           func([]byte) licensecheck.Coverage
+}
+
+// NewDefaultScanner returns a scanner that uses a new instance of the default licensecheck package scanner.
+func NewDefaultScanner() Scanner {
+	s, err := licensecheck.NewScanner(licensecheck.BuiltinLicenses())
+	if err != nil {
+		log.WithFields("error", err).Trace("unable to create default license scanner")
+		s = nil
+	}
+	return &scanner{
+		coverageThreshold: coverageThreshold,
+		scanner:           s.Scan,
+	}
+}
+
+// TestingOnlyScanner returns a scanner that uses the built-in license scanner from the licensecheck package.
+// THIS IS ONLY MEANT FOR TEST CODE, NOT PRODUCTION CODE.
+func TestingOnlyScanner() Scanner {
+	return &scanner{
+		coverageThreshold: coverageThreshold,
+		scanner:           licensecheck.Scan,
+	}
+}
+
+func (s scanner) IdentifyLicenseIDs(_ context.Context, reader io.Reader) ([]string, error) {
+	if s.scanner == nil {
+		return nil, nil
+	}
+
+	content, err := io.ReadAll(reader)
+	if err != nil {
+		return nil, err
+	}
+
+	cov := s.scanner(content)
+	if cov.Percent < s.coverageThreshold {
+		// unknown or no licenses here?
+		return nil, nil
+	}
+
+	var ids []string
+	for _, m := range cov.Match {
+		ids = append(ids, m.ID)
+	}
+	return ids, nil
+}

internal/licenses/search.go

@@ -0,0 +1,28 @@
+package licenses
+
+import (
+	"context"
+
+	"github.com/anchore/syft/syft/file"
+	"github.com/anchore/syft/syft/license"
+	"github.com/anchore/syft/syft/pkg"
+)
+
+// Search scans the contents of a license file to attempt to determine the type of license it is
+func Search(ctx context.Context, scanner Scanner, reader file.LocationReadCloser) (licenses []pkg.License, err error) {
+	licenses = make([]pkg.License, 0)
+
+	ids, err := scanner.IdentifyLicenseIDs(ctx, reader)
+	if err != nil {
+		return nil, err
+	}
+
+	for _, id := range ids {
+		lic := pkg.NewLicenseFromLocations(id, reader.Location)
+		lic.Type = license.Concluded
+
+		licenses = append(licenses, lic)
+	}
+
+	return licenses, nil
+}

internal/relationship/binary/binary_dependencies.go

@@ -36,8 +36,7 @@ func generateRelationships(resolver file.Resolver, accessor sbomsync.Accessor, i
 				newRelationships.Add(r)
 			}
 		}
-
-		for _, parentPkg := range s.Artifacts.Packages.Sorted(pkg.BinaryPkg) {
+		for _, parentPkg := range allElfPackages(s) {
 			for _, evidentLocation := range parentPkg.Locations.ToSlice() {
 				if evidentLocation.Annotations[pkg.EvidenceAnnotationKey] != pkg.PrimaryEvidenceAnnotation {
 					continue
@@ -101,7 +100,7 @@ func onlyPrimaryEvidenceLocations(p pkg.Package) []file.Location {
 
 func allElfPackages(s *sbom.SBOM) []pkg.Package {
 	var elfPkgs []pkg.Package
-	for _, p := range s.Artifacts.Packages.Sorted(pkg.BinaryPkg) {
+	for _, p := range s.Artifacts.Packages.Sorted() {
 		if !isElfPackage(p) {
 			continue
 		}

internal/relationship/binary/binary_dependencies_test.go

@@ -50,6 +50,22 @@ func TestPackagesToRemove(t *testing.T) {
 	}
 	glibCBinaryELFPackage.SetID()
 
+	glibCBinaryELFPackageAsRPM := pkg.Package{
+		Name: "glibc",
+		Locations: file.NewLocationSet(
+			file.NewLocation(glibcCoordinate.RealPath).WithAnnotation(pkg.EvidenceAnnotationKey, pkg.PrimaryEvidenceAnnotation),
+		),
+		Type: pkg.RpmPkg, // note: the elf package claims it is a RPM, not binary
+		Metadata: pkg.ELFBinaryPackageNoteJSONPayload{
+			Type:       "rpm",
+			Vendor:     "syft",
+			System:     "syftsys",
+			SourceRepo: "https://github.com/someone/somewhere.git",
+			Commit:     "5534c38d0ffef9a3f83154f0b7a7fb6ab0ab6dbb",
+		},
+	}
+	glibCBinaryELFPackageAsRPM.SetID()
+
 	glibCBinaryClassifierPackage := pkg.Package{
 		Name: "glibc",
 		Locations: file.NewLocationSet(
@@ -83,9 +99,15 @@ func TestPackagesToRemove(t *testing.T) {
 			want:     []artifact.ID{glibCBinaryELFPackage.ID()},
 		},
 		{
-			name:     "remove no packages when there is a single binary package",
+			name:     "keep packages that are overlapping rpm --> binary when the binary self identifies as an RPM",
 			resolver: file.NewMockResolverForPaths(glibcCoordinate.RealPath),
-			accessor: newAccessor([]pkg.Package{glibCBinaryELFPackage}, map[file.Coordinates]file.Executable{}, nil),
+			accessor: newAccessor([]pkg.Package{glibCPackage, glibCBinaryELFPackageAsRPM}, map[file.Coordinates]file.Executable{}, nil),
+			want:     []artifact.ID{},
+		},
+		{
+			name:     "remove no packages when there is a single binary package (or self identifying RPM)",
+			resolver: file.NewMockResolverForPaths(glibcCoordinate.RealPath),
+			accessor: newAccessor([]pkg.Package{glibCBinaryELFPackage, glibCBinaryELFPackageAsRPM}, map[file.Coordinates]file.Executable{}, nil),
 			want:     []artifact.ID{},
 		},
 		{
@@ -173,9 +195,9 @@ func TestNewDependencyRelationships(t *testing.T) {
 			file.NewLocation(parallelLibCoordinate.RealPath).WithAnnotation(pkg.EvidenceAnnotationKey, pkg.SupportingEvidenceAnnotation),
 		),
 		Language: "",
-		Type:     pkg.BinaryPkg,
+		Type:     pkg.RpmPkg,
 		Metadata: pkg.ELFBinaryPackageNoteJSONPayload{
-			Type:       "testfixture",
+			Type:       "rpm",
 			Vendor:     "syft",
 			System:     "syftsys",
 			SourceRepo: "https://github.com/someone/somewhere.git",

internal/relationship/evident_by.go

@@ -9,15 +9,18 @@ func EvidentBy(catalog *pkg.Collection) []artifact.Relationship {
 	var edges []artifact.Relationship
 	for _, p := range catalog.Sorted() {
 		for _, l := range p.Locations.ToSlice() {
-			if v, exists := l.Annotations[pkg.EvidenceAnnotationKey]; !exists || v != pkg.PrimaryEvidenceAnnotation {
-				// skip non-primary evidence from being expressed as a relationship.
-				// note: this may be configurable in the future.
-				continue
+			kind := pkg.SupportingEvidenceAnnotation
+			if v, exists := l.Annotations[pkg.EvidenceAnnotationKey]; exists {
+				kind = v
 			}
+
 			edges = append(edges, artifact.Relationship{
 				From: p,
 				To:   l.Coordinates,
 				Type: artifact.EvidentByRelationship,
+				Data: map[string]string{
+					"kind": kind,
+				},
 			})
 		}
 	}

internal/relationship/exclude_binaries_by_file_ownership_overlap.go

@@ -25,55 +25,102 @@ var (
 	binaryMetadataTypes = []string{
 		reflect.TypeOf(pkg.ELFBinaryPackageNoteJSONPayload{}).Name(),
 		reflect.TypeOf(pkg.BinarySignature{}).Name(),
+		reflect.TypeOf(pkg.JavaVMInstallation{}).Name(),
 	}
 )
 
 func ExcludeBinariesByFileOwnershipOverlap(accessor sbomsync.Accessor) {
 	accessor.WriteToSBOM(func(s *sbom.SBOM) {
 		for _, r := range s.Relationships {
-			if excludeBinaryByFileOwnershipOverlap(r, s.Artifacts.Packages) {
-				s.Artifacts.Packages.Delete(r.To.ID())
-				s.Relationships = RemoveRelationshipsByID(s.Relationships, r.To.ID())
+			if idToRemove := excludeByFileOwnershipOverlap(r, s.Artifacts.Packages); idToRemove != "" {
+				s.Artifacts.Packages.Delete(idToRemove)
+				s.Relationships = RemoveRelationshipsByID(s.Relationships, idToRemove)
 			}
 		}
 	})
 }
 
-// excludeBinaryByFileOwnershipOverlap will remove packages from a collection given the following properties are true
-// 1) the relationship between packages is OwnershipByFileOverlap
-// 2) the parent is an "os" package
-// 3) the child is a synthetic package generated by the binary cataloger
-// 4) the package names are identical
-// This was implemented as a way to help resolve: https://github.com/anchore/syft/issues/931
-func excludeBinaryByFileOwnershipOverlap(r artifact.Relationship, c *pkg.Collection) bool {
+// excludeByFileOwnershipOverlap will remove packages that should be overridden by a more authoritative package,
+// such as an OS package or a package from a cataloger with more specific information being raised up.
+func excludeByFileOwnershipOverlap(r artifact.Relationship, c *pkg.Collection) artifact.ID {
 	if artifact.OwnershipByFileOverlapRelationship != r.Type {
-		return false
+		return ""
 	}
 
 	parent := c.Package(r.From.ID())
 	if parent == nil {
-		return false
-	}
-
-	parentInExclusion := slices.Contains(osCatalogerTypes, parent.Type)
-	if !parentInExclusion {
-		return false
+		return ""
 	}
 
 	child := c.Package(r.To.ID())
 	if child == nil {
-		return false
+		return ""
 	}
 
-	if slices.Contains(binaryCatalogerTypes, child.Type) {
-		return true
+	if idToRemove := identifyOverlappingOSRelationship(parent, child); idToRemove != "" {
+		return idToRemove
+	}
+
+	if idToRemove := identifyOverlappingJVMRelationship(parent, child); idToRemove != "" {
+		return idToRemove
+	}
+
+	return ""
+}
+
+// identifyOverlappingJVMRelationship indicates the package to remove if this is a binary -> binary pkg relationship
+// with a java binary signature package and a more authoritative JVM release package.
+func identifyOverlappingJVMRelationship(parent *pkg.Package, child *pkg.Package) artifact.ID {
+	if !slices.Contains(binaryCatalogerTypes, parent.Type) {
+		return ""
+	}
+
+	if !slices.Contains(binaryCatalogerTypes, child.Type) {
+		return ""
 	}
 
 	if child.Metadata == nil {
-		return false
+		return ""
 	}
 
-	childMetadataType := reflect.TypeOf(child.Metadata)
+	var (
+		foundJVM   bool
+		idToRemove artifact.ID
+	)
+	for _, p := range []*pkg.Package{parent, child} {
+		switch p.Metadata.(type) {
+		case pkg.JavaVMInstallation:
+			foundJVM = true
+		default:
+			idToRemove = p.ID()
+		}
+	}
 
-	return slices.Contains(binaryMetadataTypes, childMetadataType.Name())
+	if foundJVM {
+		return idToRemove
+	}
+
+	return ""
+}
+
+// identifyOverlappingOSRelationship indicates the package ID to remove if this is an OS pkg -> bin pkg relationship.
+// This was implemented as a way to help resolve: https://github.com/anchore/syft/issues/931
+func identifyOverlappingOSRelationship(parent *pkg.Package, child *pkg.Package) artifact.ID {
+	if !slices.Contains(osCatalogerTypes, parent.Type) {
+		return ""
+	}
+
+	if slices.Contains(binaryCatalogerTypes, child.Type) {
+		return child.ID()
+	}
+
+	if child.Metadata == nil {
+		return ""
+	}
+
+	if !slices.Contains(binaryMetadataTypes, reflect.TypeOf(child.Metadata).Name()) {
+		return ""
+	}
+
+	return child.ID()
 }

internal/relationship/exclude_binaries_by_file_ownership_overlap_test.go

@@ -3,18 +3,17 @@ package relationship
 import (
 	"testing"
 
+	"github.com/stretchr/testify/assert"
+
 	"github.com/anchore/syft/syft/artifact"
 	"github.com/anchore/syft/syft/pkg"
 )
 
-func TestExclude(t *testing.T) {
+func TestExcludeByFileOwnershipOverlap(t *testing.T) {
 	packageA := pkg.Package{Name: "package-a", Type: pkg.ApkPkg}
-	packageB := pkg.Package{Name: "package-a", Type: pkg.PythonPkg}
-	packageC := pkg.Package{Name: "package-a", Type: pkg.BinaryPkg}
-	packageD := pkg.Package{Name: "package-d", Type: pkg.BinaryPkg}
-	packageE := pkg.Package{Name: "package-e", Type: pkg.RpmPkg, Metadata: pkg.ELFBinaryPackageNoteJSONPayload{Type: "rpm"}}
-	packageF := pkg.Package{Name: "package-f", Type: pkg.RpmPkg, Metadata: pkg.BinarySignature{}}
-	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC, &packageD, &packageE, &packageF} {
+	packageB := pkg.Package{Name: "package-b", Type: pkg.BinaryPkg, Metadata: pkg.JavaVMInstallation{}}
+	packageC := pkg.Package{Name: "package-c", Type: pkg.BinaryPkg, Metadata: pkg.ELFBinaryPackageNoteJSONPayload{Type: "rpm"}}
+	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC} {
 		p := p
 		p.SetID()
 	}
@@ -26,73 +25,152 @@ func TestExclude(t *testing.T) {
 		shouldExclude bool
 	}{
 		{
-			name: "no exclusions from os -> python",
+			// prove that OS -> bin exclusions are wired
+			name: "exclusions from os -> elf binary (as RPM)",
 			relationship: artifact.Relationship{
 				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageB,
-			},
-			packages:      pkg.NewCollection(packageA, packageB),
-			shouldExclude: false,
-		},
-		{
-			name: "exclusions from os -> binary",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageC,
+				From: packageA, // OS
+				To:   packageC, // ELF binary
 			},
 			packages:      pkg.NewCollection(packageA, packageC),
 			shouldExclude: true,
 		},
 		{
-			name: "exclusions from os -> elf binary (as RPM)",
+			// prove that bin -> JVM exclusions are wired
+			name: "exclusions from binary -> binary with JVM metadata",
 			relationship: artifact.Relationship{
 				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageE,
+				From: packageB, // binary with JVM metadata
+				To:   packageC, // binary
 			},
-			packages:      pkg.NewCollection(packageA, packageE),
+			packages:      pkg.NewCollection(packageC, packageB),
 			shouldExclude: true,
 		},
-		{
-			name: "exclusions from os -> binary (masquerading as RPM)",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageF,
-			},
-			packages:      pkg.NewCollection(packageA, packageF),
-			shouldExclude: true,
-		},
-		{
-			name: "no exclusions from python -> binary",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageB,
-				To:   packageC,
-			},
-			packages:      pkg.NewCollection(packageB, packageC),
-			shouldExclude: false,
-		},
-		{
-			name: "no exclusions for different package names",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageD,
-			},
-			packages:      pkg.NewCollection(packageA, packageD),
-			shouldExclude: false,
-		},
 	}
 
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
-			if !excludeBinaryByFileOwnershipOverlap(test.relationship, test.packages) && test.shouldExclude {
+			actualExclude := excludeByFileOwnershipOverlap(test.relationship, test.packages)
+			didExclude := actualExclude != ""
+			if !didExclude && test.shouldExclude {
 				t.Errorf("expected to exclude relationship %+v", test.relationship)
 			}
 		})
 
 	}
 }
+
+func TestIdentifyOverlappingOSRelationship(t *testing.T) {
+	packageA := pkg.Package{Name: "package-a", Type: pkg.ApkPkg} // OS package
+	packageB := pkg.Package{Name: "package-b", Type: pkg.BinaryPkg}
+	packageC := pkg.Package{Name: "package-c", Type: pkg.BinaryPkg, Metadata: pkg.BinarySignature{}}
+	packageD := pkg.Package{Name: "package-d", Type: pkg.PythonPkg} // Language package
+	packageE := pkg.Package{Name: "package-e", Type: pkg.BinaryPkg, Metadata: pkg.ELFBinaryPackageNoteJSONPayload{}}
+
+	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC, &packageD, &packageE} {
+		p.SetID()
+	}
+
+	tests := []struct {
+		name       string
+		parent     *pkg.Package
+		child      *pkg.Package
+		expectedID artifact.ID
+	}{
+		{
+			name:       "OS -> binary without metadata",
+			parent:     &packageA,
+			child:      &packageB,
+			expectedID: packageB.ID(), // OS package to binary package, should return child ID
+		},
+		{
+			name:       "OS -> binary with binary metadata",
+			parent:     &packageA,
+			child:      &packageC,
+			expectedID: packageC.ID(), // OS package to binary package with binary metadata, should return child ID
+		},
+		{
+			name:       "OS -> non-binary package",
+			parent:     &packageA,
+			child:      &packageD,
+			expectedID: "", // OS package to non-binary package, no exclusion
+		},
+		{
+			name:       "OS -> binary with ELF metadata",
+			parent:     &packageA,
+			child:      &packageE,
+			expectedID: packageE.ID(), // OS package to binary package with ELF metadata, should return child ID
+		},
+		{
+			name:       "non-OS parent",
+			parent:     &packageD, // non-OS package
+			child:      &packageC,
+			expectedID: "", // non-OS parent, no exclusion
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			resultID := identifyOverlappingOSRelationship(tt.parent, tt.child)
+			assert.Equal(t, tt.expectedID, resultID)
+		})
+	}
+}
+
+func TestIdentifyOverlappingJVMRelationship(t *testing.T) {
+
+	packageA := pkg.Package{Name: "package-a", Type: pkg.BinaryPkg}
+	packageB := pkg.Package{Name: "package-b", Type: pkg.BinaryPkg, Metadata: pkg.BinarySignature{}}
+	packageC := pkg.Package{Name: "package-c", Type: pkg.BinaryPkg, Metadata: pkg.JavaVMInstallation{}}
+	packageD := pkg.Package{Name: "package-d", Type: pkg.PythonPkg}
+	packageE := pkg.Package{Name: "package-e", Type: pkg.BinaryPkg}
+
+	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC, &packageD, &packageE} {
+		p.SetID()
+	}
+
+	tests := []struct {
+		name       string
+		parent     *pkg.Package
+		child      *pkg.Package
+		expectedID artifact.ID
+	}{
+		{
+			name:       "binary -> binary with JVM installation",
+			parent:     &packageA,
+			child:      &packageC,
+			expectedID: packageA.ID(), // JVM found, return BinaryPkg ID
+		},
+		{
+			name:       "binary -> binary with binary signature",
+			parent:     &packageA,
+			child:      &packageB,
+			expectedID: "", // binary signatures only found, no exclusion
+		},
+		{
+			name:       "binary -> python (non-binary child)",
+			parent:     &packageA,
+			child:      &packageD,
+			expectedID: "", // non-binary child, no exclusion
+		},
+		{
+			name:       "no JVM or signature in binary -> binary",
+			parent:     &packageA,
+			child:      &packageE,
+			expectedID: "", // no JVM or binary signature, no exclusion
+		},
+		{
+			name:       "non-binary parent",
+			parent:     &packageD,
+			child:      &packageC,
+			expectedID: "", // non-binary parent, no exclusion
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			resultID := identifyOverlappingJVMRelationship(tt.parent, tt.child)
+			assert.Equal(t, tt.expectedID, resultID)
+		})
+	}
+}

internal/relationship/index.go

@@ -17,20 +17,16 @@ type Index struct {
 
 // NewIndex returns a new relationship Index
 func NewIndex(relationships ...artifact.Relationship) *Index {
-	out := Index{}
+	out := Index{
+		fromID: make(map[artifact.ID]*mappedRelationships),
+		toID:   make(map[artifact.ID]*mappedRelationships),
+	}
 	out.Add(relationships...)
 	return &out
 }
 
 // Add adds all the given relationships to the index, without adding duplicates
 func (i *Index) Add(relationships ...artifact.Relationship) {
-	if i.fromID == nil {
-		i.fromID = map[artifact.ID]*mappedRelationships{}
-	}
-	if i.toID == nil {
-		i.toID = map[artifact.ID]*mappedRelationships{}
-	}
-
 	// store appropriate indexes for stable ordering to minimize ID() calls
 	for _, r := range relationships {
 		// prevent duplicates
@@ -68,6 +64,39 @@ func (i *Index) Add(relationships ...artifact.Relationship) {
 	}
 }
 
+func (i *Index) Remove(id artifact.ID) {
+	delete(i.fromID, id)
+	delete(i.toID, id)
+
+	for idx := 0; idx < len(i.all); {
+		if i.all[idx].from == id || i.all[idx].to == id {
+			i.all = append(i.all[:idx], i.all[idx+1:]...)
+		} else {
+			idx++
+		}
+	}
+}
+
+func (i *Index) Replace(ogID artifact.ID, replacement artifact.Identifiable) {
+	for _, mapped := range fromMappedByID(i.fromID, ogID) {
+		i.Add(artifact.Relationship{
+			From: replacement,
+			To:   mapped.relationship.To,
+			Type: mapped.relationship.Type,
+		})
+	}
+
+	for _, mapped := range fromMappedByID(i.toID, ogID) {
+		i.Add(artifact.Relationship{
+			From: mapped.relationship.From,
+			To:   replacement,
+			Type: mapped.relationship.Type,
+		})
+	}
+
+	i.Remove(ogID)
+}
+
 // From returns all relationships from the given identifiable, with specified types
 func (i *Index) From(identifiable artifact.Identifiable, types ...artifact.RelationshipType) []artifact.Relationship {
 	return toSortedSlice(fromMapped(i.fromID, identifiable), types)
@@ -110,10 +139,17 @@ func (i *Index) All(types ...artifact.RelationshipType) []artifact.Relationship
 }
 
 func fromMapped(idMap map[artifact.ID]*mappedRelationships, identifiable artifact.Identifiable) []*sortableRelationship {
-	if identifiable == nil || idMap == nil {
+	if identifiable == nil {
 		return nil
 	}
-	mapped := idMap[identifiable.ID()]
+	return fromMappedByID(idMap, identifiable.ID())
+}
+
+func fromMappedByID(idMap map[artifact.ID]*mappedRelationships, id artifact.ID) []*sortableRelationship {
+	if idMap == nil {
+		return nil
+	}
+	mapped := idMap[id]
 	if mapped == nil {
 		return nil
 	}

internal/relationship/index_test.go

@@ -3,6 +3,7 @@ package relationship
 import (
 	"testing"
 
+	"github.com/stretchr/testify/assert"
 	"github.com/stretchr/testify/require"
 
 	"github.com/anchore/syft/syft/artifact"
@@ -231,3 +232,179 @@ func (i id) ID() artifact.ID {
 func slice[T any](values ...T) []T {
 	return values
 }
+
+func TestRemove(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1"}
+	p2 := pkg.Package{Name: "pkg-2"}
+	p3 := pkg.Package{Name: "pkg-3"}
+	c1 := file.Coordinates{RealPath: "/coords/1"}
+	c2 := file.Coordinates{RealPath: "/coords/2"}
+	c3 := file.Coordinates{RealPath: "/coords/3"}
+	c4 := file.Coordinates{RealPath: "/coords/4"}
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3} {
+		p.SetID()
+	}
+
+	r1 := artifact.Relationship{
+		From: p1,
+		To:   p2,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r2 := artifact.Relationship{
+		From: p1,
+		To:   p3,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r3 := artifact.Relationship{
+		From: p1,
+		To:   c1,
+		Type: artifact.ContainsRelationship,
+	}
+	r4 := artifact.Relationship{
+		From: p2,
+		To:   c2,
+		Type: artifact.ContainsRelationship,
+	}
+	r5 := artifact.Relationship{
+		From: p3,
+		To:   c1,
+		Type: artifact.ContainsRelationship,
+	}
+	r6 := artifact.Relationship{
+		From: p3,
+		To:   c2,
+		Type: artifact.ContainsRelationship,
+	}
+	r7 := artifact.Relationship{
+		From: c1,
+		To:   c3,
+		Type: artifact.ContainsRelationship,
+	}
+	r8 := artifact.Relationship{
+		From: c3,
+		To:   c4,
+		Type: artifact.ContainsRelationship,
+	}
+
+	index := NewIndex(r1, r2, r3, r4, r5, r6, r7, r8)
+
+	assert.Equal(t, 8, len(index.All()))
+
+	// removal of p1 should remove r1, r2, and r3
+	index.Remove(p1.ID())
+	remaining := index.All()
+
+	assert.Equal(t, 5, len(remaining))
+	assert.NotContains(t, remaining, r1)
+	assert.NotContains(t, remaining, r2)
+	assert.NotContains(t, remaining, r3)
+
+	assert.Empty(t, index.From(p1))
+	assert.Empty(t, index.To(p1))
+
+	// removal of c1 should remove r5 and r7
+	index.Remove(c1.ID())
+	remaining = index.All()
+
+	// r8 remains since c3->c4 should still exist
+	assert.Equal(t, 3, len(remaining))
+	assert.NotContains(t, remaining, r5)
+	assert.NotContains(t, remaining, r7)
+	assert.Contains(t, remaining, r8)
+
+	assert.Empty(t, index.From(c1))
+	assert.Empty(t, index.To(c1))
+
+	// removal of c3 should remove r8
+	index.Remove(c3.ID())
+	remaining = index.All()
+
+	assert.Equal(t, 2, len(remaining))
+	assert.Contains(t, remaining, r4)
+	assert.Contains(t, remaining, r6)
+
+	assert.Empty(t, index.From(c3))
+	assert.Empty(t, index.To(c3))
+}
+
+func TestReplace(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1"}
+	p2 := pkg.Package{Name: "pkg-2"}
+	p3 := pkg.Package{Name: "pkg-3"}
+	p4 := pkg.Package{Name: "pkg-4"}
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3, &p4} {
+		p.SetID()
+	}
+
+	r1 := artifact.Relationship{
+		From: p1,
+		To:   p2,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r2 := artifact.Relationship{
+		From: p3,
+		To:   p1,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r3 := artifact.Relationship{
+		From: p2,
+		To:   p3,
+		Type: artifact.ContainsRelationship,
+	}
+
+	index := NewIndex(r1, r2, r3)
+
+	// replace p1 with p4 in the relationships
+	index.Replace(p1.ID(), &p4)
+
+	expectedRels := []artifact.Relationship{
+		{
+			From: p4, // replaced
+			To:   p2,
+			Type: artifact.DependencyOfRelationship,
+		},
+		{
+			From: p3,
+			To:   p4, // replaced
+			Type: artifact.DependencyOfRelationship,
+		},
+		{
+			From: p2,
+			To:   p3,
+			Type: artifact.ContainsRelationship,
+		},
+	}
+
+	compareRelationships(t, expectedRels, index.All())
+}
+
+func compareRelationships(t testing.TB, expected, actual []artifact.Relationship) {
+	assert.Equal(t, len(expected), len(actual), "number of relationships should match")
+	for _, e := range expected {
+		found := false
+		for _, a := range actual {
+			if a.From.ID() == e.From.ID() && a.To.ID() == e.To.ID() && a.Type == e.Type {
+				found = true
+				break
+			}
+		}
+		assert.True(t, found, "expected relationship not found: %+v", e)
+	}
+}
+
+func TestReplace_NoExistingRelations(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1"}
+	p2 := pkg.Package{Name: "pkg-2"}
+
+	p1.SetID()
+	p2.SetID()
+
+	index := NewIndex()
+
+	index.Replace(p1.ID(), &p2)
+
+	allRels := index.All()
+	assert.Len(t, allRels, 0)
+}

internal/spdxlicense/license_list.go

@@ -1,9 +1,9 @@
 // Code generated by go generate; DO NOT EDIT.
-// This file was generated by robots at 2024-05-23 08:47:23.204981 -0400 EDT m=+0.050881068
+// This file was generated by robots at 2024-08-20 11:33:49.349625 -0400 EDT m=+0.383911876
 // using data from https://spdx.org/licenses/licenses.json
 package spdxlicense
 
-const Version = "3.24.0"
+const Version = "3.25.0"
 
 var licenseIDs = map[string]string{
 	"0bsd":                                  "0BSD",
@@ -501,6 +501,8 @@ var licenseIDs = map[string]string{
 	"dldezero2.0":                           "DL-DE-ZERO-2.0",
 	"dldezero2.0.0":                         "DL-DE-ZERO-2.0",
 	"doc":                                   "DOC",
+	"docbookschema":                         "DocBook-Schema",
+	"docbookxml":                            "DocBook-XML",
 	"dotseqn":                               "Dotseqn",
 	"drl1":                                  "DRL-1.0",
 	"drl1.0":                                "DRL-1.0",
@@ -714,6 +716,7 @@ var licenseIDs = map[string]string{
 	"gutmann":                               "Gutmann",
 	"haskellreport":                         "HaskellReport",
 	"hdparm":                                "hdparm",
+	"hidapi":                                "HIDAPI",
 	"hippocratic2":                          "Hippocratic-2.1",
 	"hippocratic2.1":                        "Hippocratic-2.1",
 	"hippocratic2.1.0":                      "Hippocratic-2.1",
@@ -740,6 +743,7 @@ var licenseIDs = map[string]string{
 	"hpndmarkuskuhn":                        "HPND-Markus-Kuhn",
 	"hpndmerchantabilityvariant":            "HPND-merchantability-variant",
 	"hpndmitdisclaimer":                     "HPND-MIT-disclaimer",
+	"hpndnetrek":                            "HPND-Netrek",
 	"hpndpbmplus":                           "HPND-Pbmplus",
 	"hpndsellmitdisclaimerxserver":          "HPND-sell-MIT-disclaimer-xserver",
 	"hpndsellregexpr":                       "HPND-sell-regexpr",
@@ -1165,6 +1169,7 @@ var licenseIDs = map[string]string{
 	"rsamd":                                 "RSA-MD",
 	"rscpl":                                 "RSCPL",
 	"ruby":                                  "Ruby",
+	"rubypty":                               "Ruby-pty",
 	"saxpath":                               "Saxpath",
 	"saxpd":                                 "SAX-PD",
 	"saxpd2":                                "SAX-PD-2.0",
@@ -1265,6 +1270,9 @@ var licenseIDs = map[string]string{
 	"tuberlin2":                             "TU-Berlin-2.0",
 	"tuberlin2.0":                           "TU-Berlin-2.0",
 	"tuberlin2.0.0":                         "TU-Berlin-2.0",
+	"ubuntufont1":                           "Ubuntu-font-1.0",
+	"ubuntufont1.0":                         "Ubuntu-font-1.0",
+	"ubuntufont1.0.0":                       "Ubuntu-font-1.0",
 	"ucar":                                  "UCAR",
 	"ucl1":                                  "UCL-1.0",
 	"ucl1.0":                                "UCL-1.0",
@@ -1315,8 +1323,11 @@ var licenseIDs = map[string]string{
 	"x11.0":                                 "X11",
 	"x11.0.0":                               "X11",
 	"x11.0.0distributemodificationsvariant": "X11-distribute-modifications-variant",
+	"x11.0.0swapped":                        "X11-swapped",
 	"x11.0distributemodificationsvariant":   "X11-distribute-modifications-variant",
+	"x11.0swapped":                          "X11-swapped",
 	"x11distributemodificationsvariant":     "X11-distribute-modifications-variant",
+	"x11swapped":                            "X11-swapped",
 	"xdebug1":                               "Xdebug-1.03",
 	"xdebug1.03":                            "Xdebug-1.03",
 	"xdebug1.03.0":                          "Xdebug-1.03",

internal/task/executor.go

@@ -5,12 +5,16 @@ import (
 	"fmt"
 	"runtime/debug"
 	"sync"
+	"time"
 
 	"github.com/hashicorp/go-multierror"
 
+	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/internal/sbomsync"
+	"github.com/anchore/syft/internal/unknown"
 	"github.com/anchore/syft/syft/event/monitor"
 	"github.com/anchore/syft/syft/file"
+	"github.com/anchore/syft/syft/sbom"
 )
 
 type Executor struct {
@@ -33,6 +37,12 @@ func NewTaskExecutor(tasks []Task, numWorkers int) *Executor {
 }
 
 func (p *Executor) Execute(ctx context.Context, resolver file.Resolver, s sbomsync.Builder, prog *monitor.CatalogerTaskProgress) error {
+	var lock sync.Mutex
+	withLock := func(fn func()) {
+		lock.Lock()
+		defer lock.Unlock()
+		fn()
+	}
 	var errs error
 	wg := &sync.WaitGroup{}
 	for i := 0; i < p.numWorkers; i++ {
@@ -46,9 +56,16 @@ func (p *Executor) Execute(ctx context.Context, resolver file.Resolver, s sbomsy
 					return
 				}
 
-				if err := runTaskSafely(ctx, tsk, resolver, s); err != nil {
-					errs = multierror.Append(errs, fmt.Errorf("failed to run task: %w", err))
-					prog.SetError(err)
+				err := runTaskSafely(ctx, tsk, resolver, s)
+				unknowns, err := unknown.ExtractCoordinateErrors(err)
+				if len(unknowns) > 0 {
+					appendUnknowns(s, tsk.Name(), unknowns)
+				}
+				if err != nil {
+					withLock(func() {
+						errs = multierror.Append(errs, fmt.Errorf("failed to run task: %w", err))
+						prog.SetError(err)
+					})
 				}
 				prog.Increment()
 			}
@@ -60,6 +77,19 @@ func (p *Executor) Execute(ctx context.Context, resolver file.Resolver, s sbomsy
 	return errs
 }
 
+func appendUnknowns(builder sbomsync.Builder, taskName string, unknowns []unknown.CoordinateError) {
+	if accessor, ok := builder.(sbomsync.Accessor); ok {
+		accessor.WriteToSBOM(func(sb *sbom.SBOM) {
+			for _, u := range unknowns {
+				if sb.Artifacts.Unknowns == nil {
+					sb.Artifacts.Unknowns = map[file.Coordinates][]string{}
+				}
+				sb.Artifacts.Unknowns[u.Coordinates] = append(sb.Artifacts.Unknowns[u.Coordinates], formatUnknown(u.Reason.Error(), taskName))
+			}
+		})
+	}
+}
+
 func runTaskSafely(ctx context.Context, t Task, resolver file.Resolver, s sbomsync.Builder) (err error) {
 	// handle individual cataloger panics
 	defer func() {
@@ -68,5 +98,8 @@ func runTaskSafely(ctx context.Context, t Task, resolver file.Resolver, s sbomsy
 		}
 	}()
 
-	return t.Execute(ctx, resolver, s)
+	start := time.Now()
+	res := t.Execute(ctx, resolver, s)
+	log.WithFields("task", t.Name(), "elapsed", time.Since(start)).Info("task completed")
+	return res
 }

internal/task/file_tasks.go

@@ -3,7 +3,6 @@ package task
 import (
 	"context"
 	"crypto"
-	"fmt"
 
 	"github.com/anchore/syft/internal/sbomsync"
 	"github.com/anchore/syft/syft/artifact"
@@ -32,15 +31,12 @@ func NewFileDigestCatalogerTask(selection file.Selection, hashers ...crypto.Hash
 		}
 
 		result, err := digestsCataloger.Catalog(ctx, resolver, coordinates...)
-		if err != nil {
-			return fmt.Errorf("unable to catalog file digests: %w", err)
-		}
 
 		accessor.WriteToSBOM(func(sbom *sbom.SBOM) {
 			sbom.Artifacts.FileDigests = result
 		})
 
-		return nil
+		return err
 	}
 
 	return NewTask("file-digest-cataloger", fn)
@@ -62,15 +58,12 @@ func NewFileMetadataCatalogerTask(selection file.Selection) Task {
 		}
 
 		result, err := metadataCataloger.Catalog(ctx, resolver, coordinates...)
-		if err != nil {
-			return err
-		}
 
 		accessor.WriteToSBOM(func(sbom *sbom.SBOM) {
 			sbom.Artifacts.FileMetadata = result
 		})
 
-		return nil
+		return err
 	}
 
 	return NewTask("file-metadata-cataloger", fn)
@@ -87,15 +80,12 @@ func NewFileContentCatalogerTask(cfg filecontent.Config) Task {
 		accessor := builder.(sbomsync.Accessor)
 
 		result, err := cat.Catalog(ctx, resolver)
-		if err != nil {
-			return err
-		}
 
 		accessor.WriteToSBOM(func(sbom *sbom.SBOM) {
 			sbom.Artifacts.FileContents = result
 		})
 
-		return nil
+		return err
 	}
 
 	return NewTask("file-content-cataloger", fn)
@@ -112,15 +102,12 @@ func NewExecutableCatalogerTask(selection file.Selection, cfg executable.Config)
 		accessor := builder.(sbomsync.Accessor)
 
 		result, err := cat.Catalog(resolver)
-		if err != nil {
-			return err
-		}
 
 		accessor.WriteToSBOM(func(sbom *sbom.SBOM) {
 			sbom.Artifacts.Executables = result
 		})
 
-		return nil
+		return err
 	}
 
 	return NewTask("file-executable-cataloger", fn)
@@ -134,9 +121,10 @@ func coordinatesForSelection(selection file.Selection, accessor sbomsync.Accesso
 	}
 
 	if selection == file.FilesOwnedByPackageSelection {
-		var coordinates []file.Coordinates
+		var coordinates file.CoordinateSet
 
 		accessor.ReadFromSBOM(func(sbom *sbom.SBOM) {
+			// get any file coordinates that are owned by a package
 			for _, r := range sbom.Relationships {
 				if r.Type != artifact.ContainsRelationship {
 					continue
@@ -145,16 +133,23 @@ func coordinatesForSelection(selection file.Selection, accessor sbomsync.Accesso
 					continue
 				}
 				if c, ok := r.To.(file.Coordinates); ok {
-					coordinates = append(coordinates, c)
+					coordinates.Add(c)
 				}
 			}
+
+			// get any file coordinates referenced by a package directly
+			for p := range sbom.Artifacts.Packages.Enumerate() {
+				coordinates.Add(p.Locations.CoordinateSet().ToSlice()...)
+			}
 		})
 
-		if len(coordinates) == 0 {
+		coords := coordinates.ToSlice()
+
+		if len(coords) == 0 {
 			return nil, false
 		}
 
-		return coordinates, true
+		return coords, true
 	}
 
 	return nil, false

internal/task/package_task_factory.go

@@ -11,14 +11,16 @@ import (
 
 	"github.com/anchore/syft/internal/bus"
 	"github.com/anchore/syft/internal/log"
+	"github.com/anchore/syft/internal/relationship"
 	"github.com/anchore/syft/internal/sbomsync"
 	"github.com/anchore/syft/syft/artifact"
 	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/cataloging/pkgcataloging"
+	"github.com/anchore/syft/syft/cpe"
 	"github.com/anchore/syft/syft/event/monitor"
 	"github.com/anchore/syft/syft/file"
 	"github.com/anchore/syft/syft/pkg"
-	"github.com/anchore/syft/syft/pkg/cataloger/common/cpe"
+	cpeutils "github.com/anchore/syft/syft/pkg/cataloger/common/cpe"
 )
 
 type packageTaskFactory func(cfg CatalogingFactoryConfig) Task
@@ -26,6 +28,7 @@ type packageTaskFactory func(cfg CatalogingFactoryConfig) Task
 type PackageTaskFactories []packageTaskFactory
 
 type CatalogingFactoryConfig struct {
+	ComplianceConfig     cataloging.ComplianceConfig
 	SearchConfig         cataloging.SearchConfig
 	RelationshipsConfig  cataloging.RelationshipsConfig
 	DataGenerationConfig cataloging.DataGenerationConfig
@@ -34,6 +37,7 @@ type CatalogingFactoryConfig struct {
 
 func DefaultCatalogingFactoryConfig() CatalogingFactoryConfig {
 	return CatalogingFactoryConfig{
+		ComplianceConfig:     cataloging.DefaultComplianceConfig(),
 		SearchConfig:         cataloging.DefaultSearchConfig(),
 		RelationshipsConfig:  cataloging.DefaultRelationshipsConfig(),
 		DataGenerationConfig: cataloging.DefaultDataGenerationConfig(),
@@ -81,8 +85,6 @@ func (f PackageTaskFactories) Tasks(cfg CatalogingFactoryConfig) ([]Task, error)
 }
 
 // NewPackageTask creates a Task function for a generic pkg.Cataloger, honoring the common configuration options.
-//
-//nolint:funlen
 func NewPackageTask(cfg CatalogingFactoryConfig, c pkg.Cataloger, tags ...string) Task {
 	fn := func(ctx context.Context, resolver file.Resolver, sbom sbomsync.Builder) error {
 		catalogerName := c.Name()
@@ -101,59 +103,166 @@ func NewPackageTask(cfg CatalogingFactoryConfig, c pkg.Cataloger, tags ...string
 		t := bus.StartCatalogerTask(info, -1, "")
 
 		pkgs, relationships, err := c.Catalog(ctx, resolver)
-		if err != nil {
-			return fmt.Errorf("unable to catalog packages with %q: %w", c.Name(), err)
-		}
 
-		log.WithFields("cataloger", c.Name()).Debugf("discovered %d packages", len(pkgs))
+		log.WithFields("cataloger", catalogerName).Debugf("discovered %d packages", len(pkgs))
 
-		for i, p := range pkgs {
-			if cfg.DataGenerationConfig.GenerateCPEs {
-				// generate CPEs (note: this is excluded from package ID, so is safe to mutate)
-				// we might have binary classified CPE already with the package so we want to append here
-				dictionaryCPEs, ok := cpe.DictionaryFind(p)
-				if ok {
-					log.Tracef("used CPE dictionary to find CPEs for %s package %q: %s", p.Type, p.Name, dictionaryCPEs)
-					p.CPEs = append(p.CPEs, dictionaryCPEs...)
-				} else {
-					p.CPEs = append(p.CPEs, cpe.Generate(p)...)
-				}
-			}
+		pkgs, relationships = finalizePkgCatalogerResults(cfg, resolver, catalogerName, pkgs, relationships)
 
-			// if we were not able to identify the language we have an opportunity
-			// to try and get this value from the PURL. Worst case we assert that
-			// we could not identify the language at either stage and set UnknownLanguage
-			if p.Language == "" {
-				p.Language = pkg.LanguageFromPURL(p.PURL)
-			}
-
-			if cfg.RelationshipsConfig.PackageFileOwnership {
-				// create file-to-package relationships for files owned by the package
-				owningRelationships, err := packageFileOwnershipRelationships(p, resolver)
-				if err != nil {
-					log.Warnf("unable to create any package-file relationships for package name=%q type=%q: %w", p.Name, p.Type, err)
-				} else {
-					relationships = append(relationships, owningRelationships...)
-				}
-			}
-
-			pkgs[i] = p
-		}
+		pkgs, relationships = applyCompliance(cfg.ComplianceConfig, pkgs, relationships)
 
 		sbom.AddPackages(pkgs...)
 		sbom.AddRelationships(relationships...)
 		t.Add(int64(len(pkgs)))
 
 		t.SetCompleted()
-		log.WithFields("name", c.Name()).Trace("package cataloger completed")
+		log.WithFields("name", catalogerName).Trace("package cataloger completed")
 
-		return nil
+		return err
 	}
 	tags = append(tags, pkgcataloging.PackageTag)
 
 	return NewTask(c.Name(), fn, tags...)
 }
 
+func finalizePkgCatalogerResults(cfg CatalogingFactoryConfig, resolver file.PathResolver, catalogerName string, pkgs []pkg.Package, relationships []artifact.Relationship) ([]pkg.Package, []artifact.Relationship) {
+	for i, p := range pkgs {
+		if p.FoundBy == "" {
+			p.FoundBy = catalogerName
+		}
+
+		if cfg.DataGenerationConfig.GenerateCPEs && !hasAuthoritativeCPE(p.CPEs) {
+			// generate CPEs (note: this is excluded from package ID, so is safe to mutate)
+			// we might have binary classified CPE already with the package so we want to append here
+			dictionaryCPEs, ok := cpeutils.DictionaryFind(p)
+			if ok {
+				log.Tracef("used CPE dictionary to find CPEs for %s package %q: %s", p.Type, p.Name, dictionaryCPEs)
+				p.CPEs = append(p.CPEs, dictionaryCPEs...)
+			} else {
+				p.CPEs = append(p.CPEs, cpeutils.Generate(p)...)
+			}
+		}
+
+		// if we were not able to identify the language we have an opportunity
+		// to try and get this value from the PURL. Worst case we assert that
+		// we could not identify the language at either stage and set UnknownLanguage
+		if p.Language == "" {
+			p.Language = pkg.LanguageFromPURL(p.PURL)
+		}
+
+		if cfg.RelationshipsConfig.PackageFileOwnership {
+			// create file-to-package relationships for files owned by the package
+			owningRelationships, err := packageFileOwnershipRelationships(p, resolver)
+			if err != nil {
+				log.Warnf("unable to create any package-file relationships for package name=%q type=%q: %v", p.Name, p.Type, err)
+			} else {
+				relationships = append(relationships, owningRelationships...)
+			}
+		}
+
+		pkgs[i] = p
+	}
+	return pkgs, relationships
+}
+
+type packageReplacement struct {
+	original artifact.ID
+	pkg      pkg.Package
+}
+
+func applyCompliance(cfg cataloging.ComplianceConfig, pkgs []pkg.Package, relationships []artifact.Relationship) ([]pkg.Package, []artifact.Relationship) {
+	remainingPkgs, droppedPkgs, replacements := filterNonCompliantPackages(pkgs, cfg)
+
+	relIdx := relationship.NewIndex(relationships...)
+	for _, p := range droppedPkgs {
+		relIdx.Remove(p.ID())
+	}
+
+	for _, replacement := range replacements {
+		relIdx.Replace(replacement.original, replacement.pkg)
+	}
+
+	return remainingPkgs, relIdx.All()
+}
+
+func filterNonCompliantPackages(pkgs []pkg.Package, cfg cataloging.ComplianceConfig) ([]pkg.Package, []pkg.Package, []packageReplacement) {
+	var remainingPkgs, droppedPkgs []pkg.Package
+	var replacements []packageReplacement
+	for _, p := range pkgs {
+		keep, replacement := applyComplianceRules(&p, cfg)
+		if keep {
+			remainingPkgs = append(remainingPkgs, p)
+		} else {
+			droppedPkgs = append(droppedPkgs, p)
+		}
+		if replacement != nil {
+			replacements = append(replacements, *replacement)
+		}
+	}
+
+	return remainingPkgs, droppedPkgs, replacements
+}
+
+func applyComplianceRules(p *pkg.Package, cfg cataloging.ComplianceConfig) (bool, *packageReplacement) {
+	var drop bool
+	var replacement *packageReplacement
+
+	applyComplianceRule := func(value, fieldName string, action cataloging.ComplianceAction) bool {
+		if strings.TrimSpace(value) != "" {
+			return false
+		}
+
+		loc := "unknown"
+		locs := p.Locations.ToSlice()
+		if len(locs) > 0 {
+			loc = locs[0].Path()
+		}
+		switch action {
+		case cataloging.ComplianceActionDrop:
+			log.WithFields("pkg", p.String(), "location", loc).Debugf("package with missing %s, dropping", fieldName)
+			drop = true
+
+		case cataloging.ComplianceActionStub:
+			log.WithFields("pkg", p.String(), "location", loc).Debugf("package with missing %s, stubbing with default value", fieldName)
+			return true
+
+		case cataloging.ComplianceActionKeep:
+			log.WithFields("pkg", p.String(), "location", loc).Tracef("package with missing %s, taking no action", fieldName)
+		}
+		return false
+	}
+
+	ogID := p.ID()
+
+	if applyComplianceRule(p.Name, "name", cfg.MissingName) {
+		p.Name = cataloging.UnknownStubValue
+		p.SetID()
+	}
+
+	if applyComplianceRule(p.Version, "version", cfg.MissingVersion) {
+		p.Version = cataloging.UnknownStubValue
+		p.SetID()
+	}
+
+	newID := p.ID()
+	if newID != ogID {
+		replacement = &packageReplacement{
+			original: ogID,
+			pkg:      *p,
+		}
+	}
+
+	return !drop, replacement
+}
+
+func hasAuthoritativeCPE(cpes []cpe.CPE) bool {
+	for _, c := range cpes {
+		if c.Source != cpe.GeneratedSource {
+			return true
+		}
+	}
+	return false
+}
+
 func prettyName(s string) string {
 	if s == "" {
 		return ""

internal/task/package_task_factory_test.go

@@ -0,0 +1,140 @@
+package task
+
+import (
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+
+	"github.com/anchore/syft/syft/artifact"
+	"github.com/anchore/syft/syft/cataloging"
+	"github.com/anchore/syft/syft/cpe"
+	"github.com/anchore/syft/syft/file"
+	"github.com/anchore/syft/syft/pkg"
+)
+
+func Test_hasAuthoritativeCPE(t *testing.T) {
+	tests := []struct {
+		name string
+		cpes []cpe.CPE
+		want bool
+	}{
+		{
+			name: "no cpes",
+			cpes: []cpe.CPE{},
+			want: false,
+		},
+		{
+			name: "no authoritative cpes",
+			cpes: []cpe.CPE{
+				{
+					Source: cpe.GeneratedSource,
+				},
+			},
+			want: false,
+		},
+		{
+			name: "has declared (authoritative) cpe",
+			cpes: []cpe.CPE{
+				{
+					Source: cpe.DeclaredSource,
+				},
+			},
+			want: true,
+		},
+		{
+			name: "has lookup (authoritative) cpe",
+			cpes: []cpe.CPE{
+				{
+					Source: cpe.NVDDictionaryLookupSource,
+				},
+			},
+			want: true,
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.Equal(t, tt.want, hasAuthoritativeCPE(tt.cpes))
+		})
+	}
+}
+
+func TestApplyCompliance(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1", Version: "1.0"}
+	p2 := pkg.Package{Name: "", Version: "1.0"}   // missing name
+	p3 := pkg.Package{Name: "pkg-3", Version: ""} // missing version
+	p4 := pkg.Package{Name: "pkg-4", Version: ""} // missing version
+	c1 := file.Coordinates{RealPath: "/coords/1"}
+	c2 := file.Coordinates{RealPath: "/coords/2"}
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3, &p4} {
+		p.SetID()
+	}
+
+	r1 := artifact.Relationship{
+		From: p1,
+		To:   c1,
+		Type: artifact.ContainsRelationship,
+	}
+	r2 := artifact.Relationship{
+		From: p2,
+		To:   c2,
+		Type: artifact.ContainsRelationship,
+	}
+
+	cfg := cataloging.ComplianceConfig{
+		MissingName:    cataloging.ComplianceActionDrop,
+		MissingVersion: cataloging.ComplianceActionStub,
+	}
+
+	remainingPkgs, remainingRels := applyCompliance(cfg, []pkg.Package{p1, p2, p3, p4}, []artifact.Relationship{r1, r2})
+
+	// p2 should be dropped because it has a missing name, p3 and p4 should pass with a warning for the missing version
+	assert.Len(t, remainingPkgs, 3) // p1, p3, p4 should remain
+	assert.Len(t, remainingRels, 1) // only r1 should remain (relationship involving p1)
+}
+
+func TestFilterNonCompliantPackages(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1", Version: "1.0"}
+	p2 := pkg.Package{Name: "", Version: "1.0"}   // missing name
+	p3 := pkg.Package{Name: "pkg-3", Version: ""} // missing version
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3} {
+		p.SetID()
+	}
+
+	cfg := cataloging.ComplianceConfig{
+		MissingName:    cataloging.ComplianceActionDrop,
+		MissingVersion: cataloging.ComplianceActionKeep,
+	}
+
+	remainingPkgs, droppedPkgs, replacement := filterNonCompliantPackages([]pkg.Package{p1, p2, p3}, cfg)
+	require.Nil(t, replacement)
+
+	// p2 should be dropped because it has a missing name
+	assert.Len(t, remainingPkgs, 2)
+	assert.Len(t, droppedPkgs, 1)
+	assert.Equal(t, p2, droppedPkgs[0])
+}
+
+func TestApplyComplianceRules_DropAndStub(t *testing.T) {
+	p := pkg.Package{Name: "", Version: ""}
+	p.SetID()
+	ogID := p.ID()
+
+	cfg := cataloging.ComplianceConfig{
+		MissingName:    cataloging.ComplianceActionDrop,
+		MissingVersion: cataloging.ComplianceActionStub,
+	}
+
+	isCompliant, replacement := applyComplianceRules(&p, cfg)
+	require.NotNil(t, replacement)
+	assert.Equal(t, packageReplacement{
+		original: ogID,
+		pkg:      p,
+	}, *replacement)
+
+	// the package should be dropped due to missing name (drop action) and its version should be stubbed
+	assert.False(t, isCompliant)
+	assert.Equal(t, cataloging.UnknownStubValue, p.Version)
+}

internal/task/package_tasks.go

@@ -21,6 +21,7 @@ import (
 	"github.com/anchore/syft/syft/pkg/cataloger/kernel"
 	"github.com/anchore/syft/syft/pkg/cataloger/lua"
 	"github.com/anchore/syft/syft/pkg/cataloger/nix"
+	"github.com/anchore/syft/syft/pkg/cataloger/ocaml"
 	"github.com/anchore/syft/syft/pkg/cataloger/php"
 	"github.com/anchore/syft/syft/pkg/cataloger/python"
 	"github.com/anchore/syft/syft/pkg/cataloger/r"
@@ -33,6 +34,21 @@ import (
 	"github.com/anchore/syft/syft/pkg/cataloger/wordpress"
 )
 
+const (
+	// Java ecosystem labels
+	Java  = "java"
+	Maven = "maven"
+
+	// Go ecosystem labels
+	Go     = "go"
+	Golang = "golang"
+
+	// JavaScript ecosystem labels
+	JavaScript = "javascript"
+	Node       = "node"
+	NPM        = "npm"
+)
+
 //nolint:funlen
 func DefaultPackageTaskFactories() PackageTaskFactories {
 	return []packageTaskFactory{
@@ -48,11 +64,11 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 
 		// language-specific package installed catalogers ///////////////////////////////////////////////////////////////////////////
 		newSimplePackageTaskFactory(cpp.NewConanInfoCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "cpp", "conan"),
-		newSimplePackageTaskFactory(javascript.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "javascript", "node"),
+		newSimplePackageTaskFactory(javascript.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, JavaScript, Node),
 		newSimplePackageTaskFactory(php.NewComposerInstalledCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "php", "composer"),
 		newSimplePackageTaskFactory(r.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "r"),
 		newSimplePackageTaskFactory(ruby.NewInstalledGemSpecCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "ruby", "gem", "gemspec"),
-		newSimplePackageTaskFactory(rust.NewAuditBinaryCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "rust", "binary"),
+		newSimplePackageTaskFactory(rust.NewAuditBinaryCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "rust", "binary"),
 
 		// language-specific package declared catalogers ///////////////////////////////////////////////////////////////////////////
 		newSimplePackageTaskFactory(cpp.NewConanCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "cpp", "conan"),
@@ -66,20 +82,20 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return golang.NewGoModuleFileCataloger(cfg.PackagesConfig.Golang)
 			},
-			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "go", "golang", "gomod",
+			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, Go, Golang, "gomod",
 		),
-		newSimplePackageTaskFactory(java.NewGradleLockfileCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "java", "gradle"),
+		newSimplePackageTaskFactory(java.NewGradleLockfileCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, Java, "gradle"),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return java.NewPomCataloger(cfg.PackagesConfig.JavaArchive)
 			},
-			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "java", "maven",
+			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, Java, Maven,
 		),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return javascript.NewLockCataloger(cfg.PackagesConfig.JavaScript)
 			},
-			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "javascript", "node", "npm",
+			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, JavaScript, Node, NPM,
 		),
 		newSimplePackageTaskFactory(php.NewComposerLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "php", "composer"),
 		newSimplePackageTaskFactory(php.NewPeclCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, pkgcataloging.ImageTag, "php", "pecl"),
@@ -95,6 +111,7 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 		newSimplePackageTaskFactory(swift.NewCocoapodsCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "swift", "cocoapods"),
 		newSimplePackageTaskFactory(swift.NewSwiftPackageManagerCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "swift", "spm"),
 		newSimplePackageTaskFactory(swipl.NewSwiplPackCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "swipl", "pack"),
+		newSimplePackageTaskFactory(ocaml.NewOpamPackageManagerCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "ocaml", "opam"),
 
 		// language-specific package for both image and directory scans (but not necessarily declared) ////////////////////////////////////////
 		newSimplePackageTaskFactory(dotnet.NewDotnetPortableExecutableCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "dotnet", "c#", "binary"),
@@ -103,15 +120,15 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return golang.NewGoModuleBinaryCataloger(cfg.PackagesConfig.Golang)
 			},
-			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "go", "golang", "gomod", "binary",
+			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Go, Golang, "gomod", "binary",
 		),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return java.NewArchiveCataloger(cfg.PackagesConfig.JavaArchive)
 			},
-			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "java", "maven",
+			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Java, Maven,
 		),
-		newSimplePackageTaskFactory(java.NewNativeImageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "java"),
+		newSimplePackageTaskFactory(java.NewNativeImageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Java),
 		newSimplePackageTaskFactory(nix.NewStoreCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "nix"),
 		newSimplePackageTaskFactory(lua.NewPackageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "lua"),
 
@@ -125,6 +142,7 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 		newSimplePackageTaskFactory(binary.NewELFPackageCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, "binary", "elf-package"),
 		newSimplePackageTaskFactory(githubactions.NewActionUsageCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, "github", "github-actions"),
 		newSimplePackageTaskFactory(githubactions.NewWorkflowUsageCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, "github", "github-actions"),
+		newSimplePackageTaskFactory(java.NewJvmDistributionCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, "java", "jvm", "jdk", "jre"),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return kernel.NewLinuxKernelCataloger(cfg.PackagesConfig.LinuxKernel)

internal/task/unknowns_tasks.go

@@ -0,0 +1,114 @@
+package task
+
+import (
+	"context"
+	"strings"
+
+	"github.com/mholt/archiver/v3"
+
+	"github.com/anchore/syft/internal/log"
+	"github.com/anchore/syft/internal/sbomsync"
+	"github.com/anchore/syft/syft/cataloging"
+	"github.com/anchore/syft/syft/file"
+	"github.com/anchore/syft/syft/pkg"
+	"github.com/anchore/syft/syft/sbom"
+)
+
+const unknownsLabelerTaskName = "unknowns-labeler"
+
+func NewUnknownsLabelerTask(cfg cataloging.UnknownsConfig) Task {
+	return NewTask(unknownsLabelerTaskName, unknownsLabelerTask{cfg}.processUnknowns)
+}
+
+type unknownsLabelerTask struct {
+	cataloging.UnknownsConfig
+}
+
+// processUnknowns removes unknown entries that have valid packages reported for the locations
+func (c unknownsLabelerTask) processUnknowns(_ context.Context, resolver file.Resolver, builder sbomsync.Builder) error {
+	accessor := builder.(sbomsync.Accessor)
+	accessor.WriteToSBOM(func(s *sbom.SBOM) {
+		c.finalize(resolver, s)
+	})
+	return nil
+}
+
+func (c unknownsLabelerTask) finalize(resolver file.Resolver, s *sbom.SBOM) {
+	hasPackageReference := coordinateReferenceLookup(resolver, s)
+
+	if c.RemoveWhenPackagesDefined {
+		for coords := range s.Artifacts.Unknowns {
+			if !hasPackageReference(coords) {
+				continue
+			}
+			delete(s.Artifacts.Unknowns, coords)
+		}
+	}
+
+	if s.Artifacts.Unknowns == nil {
+		s.Artifacts.Unknowns = map[file.Coordinates][]string{}
+	}
+
+	if c.IncludeExecutablesWithoutPackages {
+		for coords := range s.Artifacts.Executables {
+			if !hasPackageReference(coords) {
+				s.Artifacts.Unknowns[coords] = append(s.Artifacts.Unknowns[coords], formatUnknown("no package identified in executable file", unknownsLabelerTaskName))
+			}
+		}
+	}
+
+	if c.IncludeUnexpandedArchives {
+		for coords := range s.Artifacts.FileMetadata {
+			unarchiver, notArchiveErr := archiver.ByExtension(coords.RealPath)
+			if unarchiver != nil && notArchiveErr == nil && !hasPackageReference(coords) {
+				s.Artifacts.Unknowns[coords] = append(s.Artifacts.Unknowns[coords], "archive not cataloged")
+			}
+		}
+	}
+}
+
+func formatUnknown(err string, task ...string) string {
+	return strings.Join(task, "/") + ": " + err
+}
+
+func coordinateReferenceLookup(resolver file.Resolver, s *sbom.SBOM) func(coords file.Coordinates) bool {
+	allPackageCoords := file.NewCoordinateSet()
+
+	// include all directly included locations that result in packages
+	for p := range s.Artifacts.Packages.Enumerate() {
+		allPackageCoords.Add(p.Locations.CoordinateSet().ToSlice()...)
+	}
+
+	// include owned files, for example specified by package managers.
+	// relationships for these owned files may be disabled, but we always want to include them
+	for p := range s.Artifacts.Packages.Enumerate() {
+		if f, ok := p.Metadata.(pkg.FileOwner); ok {
+			for _, ownedFilePath := range f.OwnedFiles() {
+				// resolve these owned files, as they may have symlinks
+				// but coordinates we will test against are always absolute paths
+				locations, err := resolver.FilesByPath(ownedFilePath)
+				if err != nil {
+					log.Debugf("unable to resolve owned file '%s': %v", ownedFilePath, err)
+				}
+				for _, loc := range locations {
+					allPackageCoords.Add(loc.Coordinates)
+				}
+			}
+		}
+	}
+
+	// include relationships
+	for _, r := range s.Relationships {
+		_, fromPkgOk := r.From.(pkg.Package)
+		fromFile, fromFileOk := r.From.(file.Coordinates)
+		_, toPkgOk := r.To.(pkg.Package)
+		toFile, toFileOk := r.To.(file.Coordinates)
+		if fromPkgOk && toFileOk {
+			allPackageCoords.Add(toFile)
+		} else if fromFileOk && toPkgOk {
+			allPackageCoords.Add(fromFile)
+		}
+	}
+
+	return allPackageCoords.Contains
+}

internal/unknown/coordinate_error.go

@@ -0,0 +1,201 @@
+package unknown
+
+import (
+	"errors"
+	"fmt"
+	"strings"
+
+	"github.com/anchore/syft/internal/log"
+	"github.com/anchore/syft/syft/file"
+)
+
+type hasCoordinates interface {
+	GetCoordinates() file.Coordinates
+}
+
+type CoordinateError struct {
+	Coordinates file.Coordinates
+	Reason      error
+}
+
+var _ error = (*CoordinateError)(nil)
+
+func (u *CoordinateError) Error() string {
+	if u.Coordinates.FileSystemID == "" {
+		return fmt.Sprintf("%s: %v", u.Coordinates.RealPath, u.Reason)
+	}
+	return fmt.Sprintf("%s (%s): %v", u.Coordinates.RealPath, u.Coordinates.FileSystemID, u.Reason)
+}
+
+// New returns a new CoordinateError unless the reason is a CoordinateError itself, in which case
+// reason will be returned directly or if reason is nil, nil will be returned
+func New(coords hasCoordinates, reason error) *CoordinateError {
+	if reason == nil {
+		return nil
+	}
+	coordinates := coords.GetCoordinates()
+	reasonCoordinateError := &CoordinateError{}
+	if errors.As(reason, &reasonCoordinateError) {
+		// if the reason is already a coordinate error, it is potentially for a different location,
+		// so we do not want to surface this location having an error
+		return reasonCoordinateError
+	}
+	return &CoordinateError{
+		Coordinates: coordinates,
+		Reason:      reason,
+	}
+}
+
+// Newf returns a new CoordinateError with a reason of an error created from given format and args
+func Newf(coords hasCoordinates, format string, args ...any) *CoordinateError {
+	return New(coords, fmt.Errorf(format, args...))
+}
+
+// Append returns an error joined to the first error/set of errors, with a new CoordinateError appended to the end
+func Append(errs error, coords hasCoordinates, reason error) error {
+	return Join(errs, New(coords, reason))
+}
+
+// Appendf returns an error joined to the first error/set of errors, with a new CoordinateError appended to the end,
+// created from the given reason and args
+func Appendf(errs error, coords hasCoordinates, format string, args ...any) error {
+	return Append(errs, coords, fmt.Errorf(format, args...))
+}
+
+// Join joins the provided sets of errors together in a flattened manner, taking into account nested errors created
+// from other sources, including errors.Join, multierror.Append, and unknown.Join
+func Join(errs ...error) error {
+	var out []error
+	for _, err := range errs {
+		// append errors, de-duplicated
+		for _, e := range flatten(err) {
+			if containsErr(out, e) {
+				continue
+			}
+			out = append(out, e)
+		}
+	}
+	if len(out) == 1 {
+		return out[0]
+	}
+	if len(out) == 0 {
+		return nil
+	}
+	return errors.Join(out...)
+}
+
+// Joinf joins the provided sets of errors together in a flattened manner, taking into account nested errors created
+// from other sources, including errors.Join, multierror.Append, and unknown.Join and appending a new error,
+// created from the format and args provided -- the error is NOT a CoordinateError
+func Joinf(errs error, format string, args ...any) error {
+	return Join(errs, fmt.Errorf(format, args...))
+}
+
+// IfEmptyf returns a new Errorf-formatted error, only when the provided slice is empty or nil when
+// the slice has entries
+func IfEmptyf[T any](emptyTest []T, format string, args ...any) error {
+	if len(emptyTest) == 0 {
+		return fmt.Errorf(format, args...)
+	}
+	return nil
+}
+
+// ExtractCoordinateErrors extracts all coordinate errors returned, and any _additional_ errors in the graph
+// are encapsulated in the second, error return parameter
+func ExtractCoordinateErrors(err error) (coordinateErrors []CoordinateError, remainingErrors error) {
+	remainingErrors = visitErrors(err, func(e error) error {
+		if coordinateError, _ := e.(*CoordinateError); coordinateError != nil {
+			coordinateErrors = append(coordinateErrors, *coordinateError)
+			return nil
+		}
+		return e
+	})
+	return coordinateErrors, remainingErrors
+}
+
+func flatten(errs ...error) []error {
+	var out []error
+	for _, err := range errs {
+		if err == nil {
+			continue
+		}
+		// turn all errors nested under a coordinate error to individual coordinate errors
+		if e, ok := err.(*CoordinateError); ok {
+			if e == nil {
+				continue
+			}
+			for _, r := range flatten(e.Reason) {
+				out = append(out, New(e.Coordinates, r))
+			}
+		} else
+		// from multierror.Append
+		if e, ok := err.(interface{ WrappedErrors() []error }); ok {
+			if e == nil {
+				continue
+			}
+			out = append(out, flatten(e.WrappedErrors()...)...)
+		} else
+		// from errors.Join
+		if e, ok := err.(interface{ Unwrap() []error }); ok {
+			if e == nil {
+				continue
+			}
+			out = append(out, flatten(e.Unwrap()...)...)
+		} else {
+			out = append(out, err)
+		}
+	}
+	return out
+}
+
+// containsErr returns true if a duplicate error is found
+func containsErr(out []error, err error) bool {
+	defer func() {
+		if err := recover(); err != nil {
+			log.Tracef("error comparing errors: %v", err)
+		}
+	}()
+	for _, e := range out {
+		if e == err {
+			return true
+		}
+	}
+	return false
+}
+
+// visitErrors visits every wrapped error. the returned error replaces the provided error, null errors are omitted from
+// the object graph
+func visitErrors(err error, fn func(error) error) error {
+	// unwrap errors from errors.Join
+	if errs, ok := err.(interface{ Unwrap() []error }); ok {
+		var out []error
+		for _, e := range errs.Unwrap() {
+			out = append(out, visitErrors(e, fn))
+		}
+		// errors.Join omits nil errors and will return nil if all passed errors are nil
+		return errors.Join(out...)
+	}
+	// unwrap errors from multierror.Append -- these also implement Unwrap() error, so check this first
+	if errs, ok := err.(interface{ WrappedErrors() []error }); ok {
+		var out []error
+		for _, e := range errs.WrappedErrors() {
+			out = append(out, visitErrors(e, fn))
+		}
+		// errors.Join omits nil errors and will return nil if all passed errors are nil
+		return errors.Join(out...)
+	}
+	// unwrap singly wrapped errors
+	if e, ok := err.(interface{ Unwrap() error }); ok {
+		wrapped := e.Unwrap()
+		got := visitErrors(wrapped, fn)
+		if got == nil {
+			return nil
+		}
+		if wrapped.Error() != got.Error() {
+			prefix := strings.TrimSuffix(err.Error(), wrapped.Error())
+			return fmt.Errorf("%s%w", prefix, got)
+		}
+		return err
+	}
+	return fn(err)
+}

internal/unknown/coordinate_error_test.go

@@ -0,0 +1,236 @@
+package unknown
+
+import (
+	"errors"
+	"fmt"
+	"strings"
+	"testing"
+
+	"github.com/stretchr/testify/require"
+
+	"github.com/anchore/syft/syft/file"
+)
+
+func Test_visitErrors(t *testing.T) {
+	tests := []struct {
+		name      string
+		in        error
+		transform func(error) error
+		expected  string
+	}{
+		{
+			name: "return",
+			in:   fmt.Errorf("err1"),
+			transform: func(e error) error {
+				return e
+			},
+			expected: "err1",
+		},
+		{
+			name: "omit",
+			in:   fmt.Errorf("err1"),
+			transform: func(_ error) error {
+				return nil
+			},
+			expected: "<nil>",
+		},
+		{
+			name: "wrapped return",
+			in:   fmt.Errorf("wrapped: %w", fmt.Errorf("err1")),
+			transform: func(e error) error {
+				return e
+			},
+			expected: "wrapped: err1",
+		},
+		{
+			name: "wrapped omit",
+			in:   fmt.Errorf("wrapped: %w", fmt.Errorf("err1")),
+			transform: func(e error) error {
+				if e.Error() == "err1" {
+					return nil
+				}
+				return e
+			},
+			expected: "<nil>",
+		},
+		{
+			name: "joined return",
+			in:   errors.Join(fmt.Errorf("err1"), fmt.Errorf("err2")),
+			transform: func(e error) error {
+				return e
+			},
+			expected: "err1\nerr2",
+		},
+		{
+			name: "joined omit",
+			in:   errors.Join(fmt.Errorf("err1"), fmt.Errorf("err2")),
+			transform: func(_ error) error {
+				return nil
+			},
+			expected: "<nil>",
+		},
+		{
+			name: "joined omit first",
+			in:   errors.Join(fmt.Errorf("err1"), fmt.Errorf("err2")),
+			transform: func(e error) error {
+				if e.Error() == "err1" {
+					return nil
+				}
+				return e
+			},
+			expected: "err2",
+		},
+		{
+			name: "joined wrapped return",
+			in:   errors.Join(fmt.Errorf("wrapped: %w", fmt.Errorf("err1")), fmt.Errorf("err2")),
+			transform: func(e error) error {
+				return e
+			},
+			expected: "wrapped: err1\nerr2",
+		},
+		{
+			name: "joined wrapped omit first",
+			in:   errors.Join(fmt.Errorf("wrapped: %w", fmt.Errorf("err1")), fmt.Errorf("err2")),
+			transform: func(e error) error {
+				if e.Error() == "err1" {
+					return nil
+				}
+				return e
+			},
+			expected: "err2",
+		},
+	}
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			gotErr := visitErrors(test.in, test.transform)
+			got := fmt.Sprintf("%v", gotErr)
+			require.Equal(t, test.expected, got)
+		})
+	}
+}
+
+func Test_Join(t *testing.T) {
+	err1 := fmt.Errorf("err1")
+	err2 := fmt.Errorf("err2")
+
+	tests := []struct {
+		name     string ``
+		in       []error
+		expected string
+	}{
+		{
+			name:     "basic",
+			in:       []error{fmt.Errorf("err")},
+			expected: "err",
+		},
+		{
+			name:     "wrapped",
+			in:       []error{fmt.Errorf("outer: %w", fmt.Errorf("err"))},
+			expected: "outer: err",
+		},
+		{
+			name:     "wrapped joined",
+			in:       []error{errors.Join(fmt.Errorf("outer: %w", fmt.Errorf("err1")), fmt.Errorf("err2"))},
+			expected: "outer: err1\nerr2",
+		},
+		{
+			name:     "duplicates",
+			in:       []error{err1, err1, err2},
+			expected: "err1\nerr2",
+		},
+		{
+			name:     "nested duplicates",
+			in:       []error{errors.Join(err1, err2), err1, err2},
+			expected: "err1\nerr2",
+		},
+		{
+			name:     "nested duplicates coords",
+			in:       []error{New(file.NewLocation("l1"), errors.Join(fmt.Errorf("err1"), fmt.Errorf("err2"))), fmt.Errorf("err1"), fmt.Errorf("err2")},
+			expected: "l1: err1\nl1: err2\nerr1\nerr2",
+		},
+		{
+			name:     "all nil",
+			in:       []error{nil, nil, nil},
+			expected: "",
+		},
+	}
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			got := Join(test.in...)
+			if test.expected == "" {
+				require.Nil(t, got)
+				return
+			}
+			require.NotNil(t, got)
+			require.Equal(t, test.expected, got.Error())
+		})
+	}
+}
+
+func Test_flatten(t *testing.T) {
+	coords := file.Coordinates{
+		RealPath: "real/path",
+	}
+	e1 := fmt.Errorf("e1")
+	e2 := fmt.Errorf("e2")
+	c1 := New(coords, fmt.Errorf("c1"))
+	c2 := New(coords, fmt.Errorf("c2"))
+	tests := []struct {
+		name     string ``
+		in       error
+		expected string
+	}{
+		{
+			name:     "basic",
+			in:       errors.Join(e1, e2),
+			expected: "e1//e2",
+		},
+		{
+			name:     "coords",
+			in:       New(coords, e1),
+			expected: "real/path: e1",
+		},
+		{
+			name:     "coords with joined children",
+			in:       New(coords, errors.Join(e1, e2)),
+			expected: "real/path: e1//real/path: e2",
+		},
+		{
+			name:     "very nested",
+			in:       errors.Join(errors.Join(errors.Join(errors.Join(e1, c1), e2), c2), e2),
+			expected: "e1//real/path: c1//e2//real/path: c2//e2",
+		},
+	}
+	toString := func(errs ...error) string {
+		var parts []string
+		for _, e := range errs {
+			parts = append(parts, e.Error())
+		}
+		return strings.Join(parts, "//")
+	}
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			got := flatten(test.in)
+			require.NotNil(t, got)
+			require.Equal(t, test.expected, toString(got...))
+		})
+	}
+}
+
+func Test_Append(t *testing.T) {
+	e1 := New(file.NewLocation("l1"), fmt.Errorf("e1"))
+	e2 := Append(e1, file.NewLocation("l2"), fmt.Errorf("e2"))
+	e3 := Appendf(e2, file.NewLocation("l3"), "%s", "e3")
+	require.Equal(t, "l1: e1\nl2: e2\nl3: e3", e3.Error())
+
+	e1 = New(file.NewLocation("l1"), nil)
+	require.Nil(t, e1)
+	e2 = Append(e1, file.NewLocation("l2"), fmt.Errorf("e2"))
+	e3 = Appendf(e2, file.NewLocation("l3"), "%s", "e3")
+	require.Equal(t, "l2: e2\nl3: e3", e3.Error())
+
+	e1 = New(file.NewLocation("l1"), fmt.Errorf("e1"))
+	e2 = Append(e1, file.NewLocation("l2"), nil)
+	e3 = Appendf(e2, file.NewLocation("l3"), "%s", "e3")
+	require.Equal(t, "l1: e1\nl3: e3", e3.Error())
+}

schema/json/schema-latest.json

@@ -1,6 +1,6 @@
 {
   "$schema": "https://json-schema.org/draft/2020-12/schema",
-  "$id": "anchore.io/schema/syft/json/16.0.15/document",
+  "$id": "anchore.io/schema/syft/json/16.0.18/document",
   "$ref": "#/$defs/Document",
   "$defs": {
     "AlpmDbEntry": {
@@ -777,6 +777,12 @@
         },
         "executable": {
           "$ref": "#/$defs/Executable"
+        },
+        "unknowns": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
         }
       },
       "type": "object",
@@ -955,6 +961,24 @@
         "virtualPath"
       ]
     },
+    "JavaJvmInstallation": {
+      "properties": {
+        "release": {
+          "$ref": "#/$defs/JavaVMRelease"
+        },
+        "files": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object",
+      "required": [
+        "release",
+        "files"
+      ]
+    },
     "JavaManifest": {
       "properties": {
         "main": {
@@ -1062,6 +1086,77 @@
         "version"
       ]
     },
+    "JavaVMRelease": {
+      "properties": {
+        "implementor": {
+          "type": "string"
+        },
+        "implementorVersion": {
+          "type": "string"
+        },
+        "javaRuntimeVersion": {
+          "type": "string"
+        },
+        "javaVersion": {
+          "type": "string"
+        },
+        "javaVersionDate": {
+          "type": "string"
+        },
+        "libc": {
+          "type": "string"
+        },
+        "modules": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "osArch": {
+          "type": "string"
+        },
+        "osName": {
+          "type": "string"
+        },
+        "osVersion": {
+          "type": "string"
+        },
+        "source": {
+          "type": "string"
+        },
+        "buildSource": {
+          "type": "string"
+        },
+        "buildSourceRepo": {
+          "type": "string"
+        },
+        "sourceRepo": {
+          "type": "string"
+        },
+        "fullVersion": {
+          "type": "string"
+        },
+        "semanticVersion": {
+          "type": "string"
+        },
+        "buildInfo": {
+          "type": "string"
+        },
+        "jvmVariant": {
+          "type": "string"
+        },
+        "jvmVersion": {
+          "type": "string"
+        },
+        "imageType": {
+          "type": "string"
+        },
+        "buildType": {
+          "type": "string"
+        }
+      },
+      "type": "object"
+    },
     "JavascriptNpmPackage": {
       "properties": {
         "name": {
@@ -1436,6 +1531,50 @@
         "files"
       ]
     },
+    "OpamPackage": {
+      "properties": {
+        "name": {
+          "type": "string"
+        },
+        "version": {
+          "type": "string"
+        },
+        "licenses": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "url": {
+          "type": "string"
+        },
+        "checksum": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "homepage": {
+          "type": "string"
+        },
+        "dependencies": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object",
+      "required": [
+        "name",
+        "version",
+        "licenses",
+        "url",
+        "checksum",
+        "homepage",
+        "dependencies"
+      ]
+    },
     "Package": {
       "properties": {
         "id": {
@@ -1539,6 +1678,9 @@
             {
               "$ref": "#/$defs/JavaArchive"
             },
+            {
+              "$ref": "#/$defs/JavaJvmInstallation"
+            },
             {
               "$ref": "#/$defs/JavascriptNpmPackage"
             },
@@ -1563,6 +1705,9 @@
             {
               "$ref": "#/$defs/NixStoreEntry"
             },
+            {
+              "$ref": "#/$defs/OpamPackage"
+            },
             {
               "$ref": "#/$defs/PhpComposerInstalledEntry"
             },

syft/cataloging/compliance.go

@@ -0,0 +1,47 @@
+package cataloging
+
+import (
+	"strings"
+)
+
+const (
+	ComplianceActionKeep ComplianceAction = "keep"
+	ComplianceActionDrop ComplianceAction = "drop"
+	ComplianceActionStub ComplianceAction = "stub"
+)
+
+const UnknownStubValue = "UNKNOWN"
+
+type ComplianceAction string
+
+type ComplianceConfig struct {
+	MissingName    ComplianceAction `yaml:"missing-name" json:"missing-name" mapstructure:"missing-name"`
+	MissingVersion ComplianceAction `yaml:"missing-version" json:"missing-version" mapstructure:"missing-version"`
+}
+
+func DefaultComplianceConfig() ComplianceConfig {
+	// Note: name and version are required minimum SBOM elements by NTIA, thus should be the API default
+	return ComplianceConfig{
+		MissingName:    ComplianceActionDrop,
+		MissingVersion: ComplianceActionStub,
+	}
+}
+
+func (c ComplianceConfig) Parse() ComplianceConfig {
+	return ComplianceConfig{
+		MissingName:    c.MissingName.Parse(),
+		MissingVersion: c.MissingVersion.Parse(),
+	}
+}
+
+func (c ComplianceAction) Parse() ComplianceAction {
+	switch strings.ToLower(string(c)) {
+	case string(ComplianceActionKeep), "include":
+		return ComplianceActionKeep
+	case string(ComplianceActionDrop), "exclude":
+		return ComplianceActionDrop
+	case string(ComplianceActionStub), "replace":
+		return ComplianceActionStub
+	}
+	return ComplianceActionKeep
+}

syft/cataloging/unknowns.go

@@ -0,0 +1,15 @@
+package cataloging
+
+type UnknownsConfig struct {
+	RemoveWhenPackagesDefined         bool
+	IncludeExecutablesWithoutPackages bool
+	IncludeUnexpandedArchives         bool
+}
+
+func DefaultUnknownsConfig() UnknownsConfig {
+	return UnknownsConfig{
+		RemoveWhenPackagesDefined:         true,
+		IncludeExecutablesWithoutPackages: true,
+		IncludeUnexpandedArchives:         true,
+	}
+}

syft/cpe/cpe.go

@@ -95,7 +95,7 @@ func NewAttributes(cpeStr string) (Attributes, error) {
 	}
 
 	// ensure that this Attributes can be validated after being fully sanitized
-	if ValidateString(c.String()) != nil {
+	if err = ValidateString(c.String()); err != nil {
 		return Attributes{}, err
 	}
 

syft/cpe/cpe_test.go

@@ -17,6 +17,7 @@ func Test_NewAttributes(t *testing.T) {
 		name     string
 		input    string
 		expected Attributes
+		wantErr  require.ErrorAssertionFunc
 	}{
 		{
 			name:     "gocase",
@@ -33,14 +34,21 @@ func Test_NewAttributes(t *testing.T) {
 			input:    `cpe:/a:%240.99_kindle_books_project:%240.99_kindle_books:6::~~~android~~`,
 			expected: MustAttributes(`cpe:2.3:a:\$0.99_kindle_books_project:\$0.99_kindle_books:6:*:*:*:*:android:*:*`),
 		},
+		{
+			name:    "null byte in version for some reason",
+			input:   "cpe:2.3:a:oracle:openjdk:11.0.22+7\u0000-J-ms8m:*:*:*:*:*:*:*",
+			wantErr: require.Error,
+		},
 	}
 
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
 			actual, err := NewAttributes(test.input)
-			if err != nil {
-				t.Fatalf("got an error while creating Attributes: %+v", err)
+			if test.wantErr != nil {
+				test.wantErr(t, err)
+				return
 			}
+			require.NoError(t, err)
 
 			if d := cmp.Diff(actual, test.expected); d != "" {
 				t.Errorf("Attributes mismatch (-want +got):\n%s", d)