Add JVM cataloger (#3217)

* add jvm cataloger

Signed-off-by: Alex Goodman <wagoodman@users.noreply.github.com>

* simplify version selection

Signed-off-by: Alex Goodman <wagoodman@users.noreply.github.com>

* CPEs from JVM cataloger should be declared

Signed-off-by: Alex Goodman <wagoodman@users.noreply.github.com>

* ensure package overlap is enabled for sensitive use cases

Signed-off-by: Alex Goodman <wagoodman@users.noreply.github.com>

* more permissive glob

Signed-off-by: Alex Goodman <wagoodman@users.noreply.github.com>

---------

Signed-off-by: Alex Goodman <wagoodman@users.noreply.github.com>

.binny.yaml

@@ -26,7 +26,7 @@ tools:
   # used for linting
   - name: golangci-lint
     version:
-      want: v1.59.1
+      want: v1.61.0
     method: github-release
     with:
       repo: golangci/golangci-lint
@@ -34,7 +34,7 @@ tools:
   # used for showing the changelog at release
   - name: glow
     version:
-      want: v1.5.1
+      want: v2.0.0
     method: github-release
     with:
       repo: charmbracelet/glow
@@ -42,7 +42,7 @@ tools:
   # used for signing the checksums file at release
   - name: cosign
     version:
-      want: v2.3.0
+      want: v2.4.0
     method: github-release
     with:
       repo: sigstore/cosign
@@ -58,7 +58,7 @@ tools:
   # used to release all artifacts
   - name: goreleaser
     version:
-      want: v2.1.0
+      want: v2.3.2
     method: github-release
     with:
       repo: goreleaser/goreleaser
@@ -103,7 +103,7 @@ tools:
   # used for running all local and CI tasks
   - name: task
     version:
-      want: v3.38.0
+      want: v3.39.2
     method: github-release
     with:
       repo: go-task/task
@@ -111,7 +111,23 @@ tools:
   # used for triggering a release
   - name: gh
     version:
-      want: v2.54.0
+      want: v2.57.0
     method: github-release
     with:
       repo: cli/cli
+
+  # used to upload test fixture cache
+  - name: oras
+    version:
+      want: v1.2.0
+    method: github-release
+    with:
+      repo: oras-project/oras
+
+  # used to upload test fixture cache
+  - name: yq
+    version:
+      want: v4.44.3
+    method: github-release
+    with:
+      repo: mikefarah/yq

.github/ISSUE_TEMPLATE/config.yml

@@ -1,6 +1,6 @@
 contact_links:
 
-  - name: Join the Slack community 💬
-    # link to our community Slack registration page
-    url: https://anchore.com/slack
+  - name: Join our Discourse community 💬
+    # link to our community Discourse site
+    url: https://anchore.com/discourse
     about: 'Come chat with us! Ask for help, join our software development efforts, or just give us feedback!'

.github/actions/bootstrap/action.yaml

@@ -13,16 +13,15 @@ inputs:
   cache-key-prefix:
     description: "Prefix all cache keys with this value"
     required: true
-    default: "1ac8281053"
-  compute-fingerprints:
-    description: "Compute test fixture fingerprints"
+    default: "181053ac82"
+  download-test-fixture-cache:
+    description: "Download test fixture cache from OCI and github actions"
     required: true
-    default: "true"
+    default: "false"
   bootstrap-apt-packages:
     description: "Space delimited list of tools to install via apt"
     default: "libxml2-utils"
 
-
 runs:
   using: "composite"
   steps:
@@ -54,8 +53,14 @@ runs:
       run: |
         DEBIAN_FRONTEND=noninteractive sudo apt update && sudo -E apt install -y ${{ inputs.bootstrap-apt-packages }}
 
-    - name: Create all cache fingerprints
-      if: inputs.compute-fingerprints == 'true'
-      shell: bash
-      run: make fingerprints
+    - name: Restore ORAS cache from github actions
+      if: inputs.download-test-fixture-cache == 'true'
+      uses: actions/cache@704facf57e6136b1bc63b828d79edcd491f0ee84 # v3.3.2
+      with:
+        path: ${{ github.workspace }}/.tmp/oras-cache
+        key: ${{ inputs.cache-key-prefix }}-oras-cache
 
+    - name: Download test fixture cache
+      if: inputs.download-test-fixture-cache == 'true'
+      shell: bash
+      run: make download-test-fixture-cache

.github/scripts/find_cache_paths.py

@@ -0,0 +1,135 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import os
+import glob
+import sys
+import json
+import hashlib
+
+
+IGNORED_PREFIXES = []
+
+
+def find_fingerprints_and_check_dirs(base_dir):
+    all_fingerprints = set(glob.glob(os.path.join(base_dir, '**', 'test*', '**', '*.fingerprint'), recursive=True))
+
+    all_fingerprints = {os.path.relpath(fp) for fp in all_fingerprints
+                        if not any(fp.startswith(prefix) for prefix in IGNORED_PREFIXES)}
+
+    if not all_fingerprints:
+        show("No .fingerprint files or cache directories found.")
+        exit(1)
+
+    missing_content = []
+    valid_paths = set()
+    fingerprint_contents = []
+
+    for fingerprint in all_fingerprints:
+        path = fingerprint.replace('.fingerprint', '')
+
+        if not os.path.exists(path):
+            missing_content.append(path)
+            continue
+
+        if not os.path.isdir(path):
+            valid_paths.add(path)
+            continue
+
+        if os.listdir(path):
+            valid_paths.add(path)
+        else:
+            missing_content.append(path)
+
+        with open(fingerprint, 'r') as f:
+            content = f.read().strip()
+            fingerprint_contents.append((fingerprint, content))
+
+    return sorted(valid_paths), missing_content, fingerprint_contents
+
+
+def parse_fingerprint_contents(fingerprint_content):
+    input_map = {}
+    for line in fingerprint_content.splitlines():
+        digest, path = line.split()
+        input_map[path] = digest
+    return input_map
+
+
+def calculate_sha256(fingerprint_contents):
+    sorted_fingerprint_contents = sorted(fingerprint_contents, key=lambda x: x[0])
+
+    concatenated_contents = ''.join(content for _, content in sorted_fingerprint_contents)
+
+    sha256_hash = hashlib.sha256(concatenated_contents.encode()).hexdigest()
+
+    return sha256_hash
+
+
+def calculate_file_sha256(file_path):
+    sha256_hash = hashlib.sha256()
+    with open(file_path, 'rb') as f:
+        for byte_block in iter(lambda: f.read(4096), b""):
+            sha256_hash.update(byte_block)
+    return sha256_hash.hexdigest()
+
+
+def show(*s: str):
+    print(*s, file=sys.stderr)
+
+
+def main(file_path: str | None):
+    base_dir = '.'
+    valid_paths, missing_content, fingerprint_contents = find_fingerprints_and_check_dirs(base_dir)
+
+    if missing_content:
+        show("The following paths are missing or have no content, but have corresponding .fingerprint files:")
+        for path in sorted(missing_content):
+            show(f"- {path}")
+        show("Please ensure these paths exist and have content if they are directories.")
+        exit(1)
+
+    sha256_hash = calculate_sha256(fingerprint_contents)
+
+    paths_with_digests = []
+    for path in sorted(valid_paths):
+        fingerprint_file = f"{path}.fingerprint"
+        try:
+            if os.path.exists(fingerprint_file):
+                file_digest = calculate_file_sha256(fingerprint_file)
+
+                # Parse the fingerprint file to get the digest/path tuples
+                with open(fingerprint_file, 'r') as f:
+                    fingerprint_content = f.read().strip()
+                    input_map = parse_fingerprint_contents(fingerprint_content)
+
+                paths_with_digests.append({
+                    "path": path,
+                    "digest": file_digest,
+                    "input": input_map
+                })
+
+        except Exception as e:
+            show(f"Error processing {fingerprint_file}: {e}")
+            raise e
+
+
+    output = {
+        "digest": sha256_hash,
+        "paths": paths_with_digests
+    }
+
+    content = json.dumps(output, indent=2, sort_keys=True)
+
+    if file_path:
+        with open(file_path, 'w') as f:
+            f.write(content)
+
+    print(content)
+
+
+if __name__ == "__main__":
+    file_path = None
+    if len(sys.argv) > 1:
+        file_path = sys.argv[1]
+    main(file_path)

.github/scripts/fingerprint_docker_fixtures.py

@@ -0,0 +1,70 @@
+#!/usr/bin/env python3
+
+import os
+import subprocess
+import hashlib
+
+BOLD = '\033[1m'
+YELLOW = '\033[0;33m'
+RESET = '\033[0m'
+
+
+def print_message(message):
+    print(f"{YELLOW}{message}{RESET}")
+
+
+def sha256sum(filepath):
+    h = hashlib.sha256()
+    with open(filepath, 'rb') as f:
+        for chunk in iter(lambda: f.read(4096), b""):
+            h.update(chunk)
+    return h.hexdigest()
+
+
+def is_git_tracked_or_untracked(directory):
+    """Returns a sorted list of files in the directory that are tracked or not ignored by Git."""
+    result = subprocess.run(
+        ["git", "ls-files", "--cached", "--others", "--exclude-standard"],
+        cwd=directory,
+        stdout=subprocess.PIPE,
+        text=True
+    )
+    return sorted(result.stdout.strip().splitlines())
+
+
+def find_test_fixture_dirs_with_images(base_dir):
+    """Find directories that contain 'test-fixtures' and at least one 'image-*' directory."""
+    for root, dirs, files in os.walk(base_dir):
+        if 'test-fixtures' in root:
+            image_dirs = [d for d in dirs if d.startswith('image-')]
+            if image_dirs:
+                yield os.path.realpath(root)
+
+
+def generate_fingerprints():
+    print_message("creating fingerprint files for docker fixtures...")
+
+    for test_fixture_dir in find_test_fixture_dirs_with_images('.'):
+        cache_fingerprint_path = os.path.join(test_fixture_dir, 'cache.fingerprint')
+
+        with open(cache_fingerprint_path, 'w') as fingerprint_file:
+            for image_dir in find_image_dirs(test_fixture_dir):
+                for file in is_git_tracked_or_untracked(image_dir):
+                    file_path = os.path.join(image_dir, file)
+                    checksum = sha256sum(file_path)
+                    path_from_fixture_dir = os.path.relpath(file_path, test_fixture_dir)
+                    fingerprint_file.write(f"{checksum}  {path_from_fixture_dir}\n")
+
+
+def find_image_dirs(test_fixture_dir):
+    """Find all 'image-*' directories inside a given test-fixture directory."""
+    result = []
+    for root, dirs, files in os.walk(test_fixture_dir):
+        for dir_name in dirs:
+            if dir_name.startswith('image-'):
+                result.append(os.path.join(root, dir_name))
+    return sorted(result)
+
+
+if __name__ == "__main__":
+    generate_fingerprints()

.github/scripts/labeler.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python3
+
 from __future__ import annotations
 
 import sys

.github/scripts/labeler_test.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python3
+
 import unittest
 from unittest.mock import patch
 import subprocess

.github/workflows/benchmark-testing.yaml

@@ -39,7 +39,7 @@ jobs:
           OUTPUT="${OUTPUT//$'\r'/'%0D'}" # URL encode all '\r' characters
           echo "result=$OUTPUT" >> $GITHUB_OUTPUT
 
-      - uses: actions/upload-artifact@89ef406dd8d7e03cfd12d9e0a4a378f454709029 # v4.3.5
+      - uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874 # v4.4.0
         with:
           name: benchmark-test-results
           path: test/results/**/*

.github/workflows/codeql-analysis.yml

@@ -45,7 +45,7 @@ jobs:
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a #v3.25.15
+      uses: github/codeql-action/init@294a9d92911152fe08befb9ec03e240add280cb3 #v3.26.8
       with:
         languages: ${{ matrix.language }}
         # If you wish to specify custom queries, you can do so here or in a config file.
@@ -56,7 +56,7 @@ jobs:
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
-      uses: github/codeql-action/autobuild@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a #v3.25.15
+      uses: github/codeql-action/autobuild@294a9d92911152fe08befb9ec03e240add280cb3 #v3.26.8
 
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 https://git.io/JvXDl
@@ -70,4 +70,4 @@ jobs:
     #   make release
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a #v3.25.15
+      uses: github/codeql-action/analyze@294a9d92911152fe08befb9ec03e240add280cb3 #v3.26.8

.github/workflows/release-version-file.yaml

@@ -1,4 +1,4 @@
-name: "Release"
+name: "Release: version file"
 
 on:
 

.github/workflows/release.yaml

@@ -148,7 +148,7 @@ jobs:
           # for updating brew formula in anchore/homebrew-syft
           GITHUB_BREW_TOKEN: ${{ secrets.ANCHOREOPS_GITHUB_OSS_WRITE_TOKEN }}
 
-      - uses: anchore/sbom-action@d94f46e13c6c62f59525ac9a1e147a99dc0b9bf5 #v0.17.0
+      - uses: anchore/sbom-action@61119d458adab75f756bc0b9e4bde25725f86a7a #v0.17.2
         continue-on-error: true
         with:
           artifact-name: sbom.spdx.json

.github/workflows/test-fixture-cache-publish.yaml

@@ -0,0 +1,39 @@
+name: "Test fixture cache: publish"
+
+on:
+  workflow_dispatch:
+  schedule:
+    # run nightly at 4AM UTC
+    - cron: "0 4 * * *"
+
+permissions:
+  contents: read
+
+jobs:
+
+  Publish:
+    name: "Publish test fixture image cache"
+    # we use this runner to get enough storage space for docker images and fixture cache
+    runs-on: ubuntu-22.04-4core-16gb
+    permissions:
+      packages: write
+    steps:
+      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+
+      - name: Bootstrap environment
+        uses: ./.github/actions/bootstrap
+        with:
+          # we want to rebuild the cache with no previous state
+          download-test-fixture-cache: false
+
+      - name: Run all tests
+        run: make test
+        env:
+          # we want to rebuild the cache with no previous state
+          DOWNLOAD_TEST_FIXTURE_CACHE: "false"
+
+      - name: Login to GitHub Container Registry (ORAS)
+        run: echo "${{ secrets.GITHUB_TOKEN }}" | .tool/oras login ghcr.io -u ${{ github.actor }} --password-stdin
+
+      - name: Publish test fixture cache
+        run: make upload-test-fixture-cache

.github/workflows/update-bootstrap-tools.yml

@@ -19,7 +19,6 @@ jobs:
         uses: ./.github/actions/bootstrap
         with:
           bootstrap-apt-packages: ""
-          compute-fingerprints: "false"
           go-dependencies: false
 
       - name: "Update tool versions"
@@ -50,7 +49,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c #v6.1.0
+      - uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f #v7.0.5
         with:
           signoff: true
           delete-branch: true

.github/workflows/update-cpe-dictionary-index.yml

@@ -33,7 +33,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c #v6.1.0
+      - uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f #v7.0.5
         with:
           signoff: true
           delete-branch: true

.github/workflows/update-stereoscope-release.yml

@@ -44,7 +44,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c #v6.1.0
+      - uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f #v7.0.5
         with:
           signoff: true
           delete-branch: true

.github/workflows/validations.yaml

@@ -35,48 +35,8 @@ jobs:
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
-
-      - name: Restore file executable test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
         with:
-          path: syft/file/cataloger/executable/test-fixtures/elf/bin
-          key: ${{ runner.os }}-unit-file-executable-elf-cache-${{ hashFiles( 'syft/file/cataloger/executable/test-fixtures/elf/cache.fingerprint' ) }}
-
-      - name: Restore file executable shared-info test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/file/cataloger/executable/test-fixtures/shared-info/bin
-          key: ${{ runner.os }}-unit-file-executable-shared-info-cache-${{ hashFiles( 'syft/file/cataloger/executable/test-fixtures/shared-info/cache.fingerprint' ) }}
-
-      - name: Restore Java test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/java/test-fixtures/java-builds/packages
-          key: ${{ runner.os }}-unit-java-cache-${{ hashFiles( 'syft/pkg/cataloger/java/test-fixtures/java-builds/cache.fingerprint' ) }}
-
-      - name: Restore RPM test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/redhat/test-fixtures/rpms
-          key: ${{ runner.os }}-unit-rpm-cache-${{ hashFiles( 'syft/pkg/cataloger/redhat/test-fixtures/rpms.fingerprint' ) }}
-
-      - name: Restore go binary test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/golang/test-fixtures/archs/binaries
-          key: ${{ runner.os }}-unit-go-binaries-cache-${{ hashFiles( 'syft/pkg/cataloger/golang/test-fixtures/archs/binaries.fingerprint' ) }}
-
-      - name: Restore binary cataloger test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/binary/test-fixtures/classifiers/bin
-          key: ${{ runner.os }}-unit-binary-cataloger-cache-${{ hashFiles( 'syft/pkg/cataloger/binary/test-fixtures/cache.fingerprint' ) }}
-
-      - name: Restore Kernel test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: syft/pkg/cataloger/kernel/test-fixtures/cache
-          key: ${{ runner.os }}-unit-kernel-cache-${{ hashFiles( 'syft/pkg/cataloger/kernel/test-fixtures/cache.fingerprint' ) }}
+          download-test-fixture-cache: true
 
       - name: Run unit tests
         run: make unit
@@ -91,16 +51,12 @@ jobs:
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
+        with:
+          download-test-fixture-cache: true
 
       - name: Validate syft output against the CycloneDX schema
         run: make validate-cyclonedx-schema
 
-      - name: Restore integration test cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: ${{ github.workspace }}/cmd/syft/internal/test/integration/test-fixtures/cache
-          key: ${{ runner.os }}-integration-test-cache-${{ hashFiles('/cmd/syft/internal/test/integration/test-fixtures/cache.fingerprint') }}
-
       - name: Run integration tests
         run: make integration
 
@@ -143,6 +99,8 @@ jobs:
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
+        with:
+          download-test-fixture-cache: true
 
       - name: Download snapshot build
         id: snapshot-cache
@@ -162,13 +120,6 @@ jobs:
       - name: Run comparison tests (Linux)
         run: make compare-linux
 
-      - name: Restore install.sh test image cache
-        id: install-test-image-cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: ${{ github.workspace }}/test/install/cache
-          key: ${{ runner.os }}-install-test-image-cache-${{ hashFiles('test/install/cache.fingerprint') }}
-
       - name: Load test image cache
         if: steps.install-test-image-cache.outputs.cache-hit == 'true'
         run: make install-test-cache-load
@@ -188,7 +139,7 @@ jobs:
     runs-on: macos-latest
     steps:
       - name: Install Cosign
-        uses: sigstore/cosign-installer@v3.5.0
+        uses: sigstore/cosign-installer@v3.6.0
 
       - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
 
@@ -196,8 +147,8 @@ jobs:
         uses: ./.github/actions/bootstrap
         with:
           bootstrap-apt-packages: ""
-          compute-fingerprints: "false"
           go-dependencies: false
+          download-test-fixture-cache: true
 
       - name: Download snapshot build
         id: snapshot-cache
@@ -214,13 +165,6 @@ jobs:
         if: steps.snapshot-cache.outputs.cache-hit != 'true'
         run: echo "unable to download snapshots from previous job" && false
 
-      - name: Restore docker image cache for compare testing
-        id: mac-compare-testing-cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
-        with:
-          path: image.tar
-          key: ${{ runner.os }}-${{ hashFiles('test/compare/mac.sh') }}
-
       - name: Run comparison tests (Mac)
         run: make compare-mac
 
@@ -238,12 +182,8 @@ jobs:
 
       - name: Bootstrap environment
         uses: ./.github/actions/bootstrap
-
-      - name: Restore CLI test-fixture cache
-        uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 #v4.0.2
         with:
-          path: ${{ github.workspace }}/test/cli/test-fixtures/cache
-          key: ${{ runner.os }}-cli-test-cache-${{ hashFiles('test/cli/test-fixtures/cache.fingerprint') }}
+          download-test-fixture-cache: true
 
       - name: Download snapshot build
         id: snapshot-cache
@@ -262,3 +202,22 @@ jobs:
 
       - name: Run CLI Tests (Linux)
         run: make cli
+
+
+  Cleanup-Cache:
+    name: "Cleanup snapshot cache"
+    if: github.event.pull_request.head.repo.full_name == github.repository
+    runs-on: ubuntu-20.04
+    permissions:
+      actions: write
+    needs:
+      - Acceptance-Linux
+      - Acceptance-Mac
+      - Cli-Linux
+    steps:
+      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 #v4.1.7
+
+      - name: Delete snapshot cache
+        run: gh cache delete "snapshot-build-${{ github.run_id }}"
+        env:
+          GH_TOKEN: ${{ github.token }}

.golangci.yaml

@@ -12,10 +12,10 @@ linters:
   enable:
     - asciicheck
     - bodyclose
+    - copyloopvar
     - dogsled
     - dupl
     - errcheck
-    - exportloopref
     - funlen
     - gocognit
     - goconst
@@ -30,6 +30,7 @@ linters:
     - ineffassign
     - misspell
     - nakedret
+    - nolintlint
     - revive
     - staticcheck
     - stylecheck
@@ -56,6 +57,9 @@ linters-settings:
     settings:
       ruleguard:
         rules: "test/rules/rules.go"
+  gosec:
+    excludes:
+      - G115
 output:
   uniq-by-line: false
 run:
@@ -80,7 +84,6 @@ run:
 #    - lll         # without a way to specify per-line exception cases, this is not usable
 #    - maligned    # this is an excellent linter, but tricky to optimize and we are not sensitive to memory layout optimizations
 #    - nestif
-#    - nolintlint   # as of go1.19 this conflicts with the behavior of gofmt, which is a deal-breaker (lint-fix will still fail when running lint)
 #    - prealloc     # following this rule isn't consistently a good idea, as it sometimes forces unnecessary allocations that result in less idiomatic code
 #    - rowserrcheck # not in a repo with sql, so this is not useful
 #    - scopelint    # deprecated

DEVELOPING.md

@@ -83,7 +83,7 @@ Syft's core library is implemented in the `syft` package and subpackages, where
 - the `syft` package contains a single function that can take a `source.Source` object and catalog it, producing an `sbom.SBOM` object
 - the `syft/format` package contains the ability to encode and decode SBOMs to and from different SBOM formats (such as SPDX and CycloneDX)
 
-The `cmd` pacakge at the highest level execution flow wires up [`spf13/cobra`](https://github.com/spf13/cobra) commands for execution in the main application:
+The `cmd` package at the highest level execution flow wires up [`spf13/cobra`](https://github.com/spf13/cobra) commands for execution in the main application:
 ```mermaid
 sequenceDiagram
     participant main as cmd/syft/main
@@ -212,7 +212,7 @@ Finally, here is an example of where the package construction is done within the
 - [The APK package constructor itself](https://github.com/anchore/syft/tree/v0.70.0/syft/pkg/cataloger/apkdb/package.go#L12-L27)
 
 Interested in building a new cataloger? Checkout the [list of issues with the `new-cataloger` label](https://github.com/anchore/syft/issues?q=is%3Aopen+is%3Aissue+label%3Anew-cataloger+no%3Aassignee)!
-If you have questions about implementing a cataloger feel free to file an issue or reach out to us [on slack](https://anchore.com/slack)!
+If you have questions about implementing a cataloger feel free to file an issue or reach out to us [on discourse](https://anchore.com/discourse)!
 
 
 #### Searching for files

Makefile

@@ -25,8 +25,8 @@ ci-bootstrap-go:
 
 # this is a bootstrapping catch-all, where if the target doesn't exist, we'll ensure the tools are installed and then try again
 %:
-	make $(TASK)
-	$(TASK) $@
+	@make --silent $(TASK)
+	@$(TASK) $@
 
 ## Shim targets #################################
 

README.md

@@ -12,7 +12,7 @@
  &nbsp;<a href="https://github.com/anchore/syft/releases/latest" target="_blank"><img alt="GitHub release" src="https://img.shields.io/github/release/anchore/syft.svg"></a>&nbsp;
  &nbsp;<a href="https://github.com/anchore/syft" target="_blank"><img alt="GitHub go.mod Go version" src="https://img.shields.io/github/go-mod/go-version/anchore/syft.svg"></a>&nbsp;
  &nbsp;<a href="" target="_blank"><img alt="License: Apache-2.0" src="https://img.shields.io/badge/License-Apache%202.0-blue.svg"></a>&nbsp;
- &nbsp;<a href="https://anchore.com/slack" target="_blank"><img alt="Slack" src="https://img.shields.io/badge/Slack-Join-blue?logo=slack"></a>&nbsp;
+ &nbsp;<a href="https://anchore.com/discourse" target="_blank"><img alt="Join our Discourse" src="https://img.shields.io/badge/Discourse-Join-blue?logo=discourse"/></a>&nbsp;
 </p>
 
 ![syft-demo](https://user-images.githubusercontent.com/590471/90277200-2a253000-de33-11ea-893f-32c219eea11a.gif)
@@ -178,5 +178,3 @@ The Syft Team hold regular community meetings online. All are welcome to join to
 - Check the [calendar](https://calendar.google.com/calendar/u/0/r?cid=Y182OTM4dGt0MjRtajI0NnNzOThiaGtnM29qNEBncm91cC5jYWxlbmRhci5nb29nbGUuY29t) for the next meeting date. 
 - Add items to the [agenda](https://docs.google.com/document/d/1ZtSAa6fj2a6KRWviTn3WoJm09edvrNUp4Iz_dOjjyY8/edit?usp=sharing) (join [this group](https://groups.google.com/g/anchore-oss-community) for write access to the [agenda](https://docs.google.com/document/d/1ZtSAa6fj2a6KRWviTn3WoJm09edvrNUp4Iz_dOjjyY8/edit?usp=sharing))
 - See you there!
-
-<!-- KJIc1D4zXJbRybKEJrWd --> 

Taskfile.yaml

@@ -4,9 +4,19 @@ vars:
   OWNER: anchore
   PROJECT: syft
 
+  CACHE_IMAGE: ghcr.io/{{ .OWNER }}/{{ .PROJECT }}/test-fixture-cache:latest
+
   # static file dirs
   TOOL_DIR: .tool
   TMP_DIR: .tmp
+  ORAS_CACHE: "{{ .TMP_DIR }}/oras-cache"
+  CACHE_PATHS_FILE: "{{ .TMP_DIR }}/cache_paths.json"
+  LAST_CACHE_PULL_FILE: "{{ .TMP_DIR }}/last_cache_paths.json"
+
+  # TOOLS
+  ORAS: "{{ .TOOL_DIR }}/oras"
+  YQ: "{{ .TOOL_DIR }}/yq"
+  TASK: "{{ .TOOL_DIR }}/task"
 
   # used for changelog generation
   CHANGELOG: CHANGELOG.md
@@ -33,6 +43,9 @@ vars:
   COMPARE_DIR: ./test/compare
   COMPARE_TEST_IMAGE: centos:8.2.2004
 
+env:
+  GNUMAKEFLAGS: '--no-print-directory'
+
 tasks:
 
   ## High-level tasks #################################
@@ -65,6 +78,7 @@ tasks:
       - task: benchmark
       - task: test-utils
       - task: cli
+      - task: check-docker-cache
 
   ## Bootstrap tasks #################################
 
@@ -212,10 +226,6 @@ tasks:
     # that the cache being restored with the correct binary will be rebuilt since the timestamps
     # and local checksums will not line up.
     deps: [tools, snapshot]
-    sources:
-      - "{{ .SNAPSHOT_BIN }}"
-      - ./test/cli/**
-      - ./**/*.go
     cmds:
       - cmd: "echo 'testing binary: {{ .SNAPSHOT_BIN }}'"
         silent: true
@@ -229,18 +239,14 @@ tasks:
 
   test-utils:
     desc: Run tests for pipeline utils
-    sources:
-      - .github/scripts/labeler*.py
     cmds:
-      - cmd: python .github/scripts/labeler_test.py
+      - cmd: .github/scripts/labeler_test.py
 
 
   ## Benchmark test targets #################################
 
   benchmark:
     deps: [tmpdir]
-    sources:
-      - ./**/*.go
     generates:
       - "{{ .TMP_DIR }}/benchmark-main.txt"
     cmds:
@@ -253,8 +259,6 @@ tasks:
 
   show-benchstat:
     deps: [benchmark, tmpdir]
-    sources:
-      - "{{ .TMP_DIR }}/benchstat.txt"
     cmds:
       - cmd: "cat {{ .TMP_DIR }}/benchstat.txt"
         silent: true
@@ -263,56 +267,188 @@ tasks:
   ## Test-fixture-related targets #################################
 
   fingerprints:
-    desc: Generate test fixture fingerprints
+    desc: Generate fingerprints for all non-docker test fixture
+    silent: true
+    # this will look for `test-fixtures/Makefile` and invoke the `fingerprint` target to calculate all cache input fingerprint files
     generates:
-      - cmd/syft/internal/test/integration/test-fixtures/cache.fingerprint
-      - syft/file/cataloger/executable/test-fixtures/elf/cache.fingerprint
-      - syft/file/cataloger/executable/test-fixtures/shared-info/cache.fingerprint
-      - syft/pkg/cataloger/binary/test-fixtures/cache.fingerprint
-      - syft/pkg/cataloger/java/test-fixtures/java-builds/cache.fingerprint
-      - syft/pkg/cataloger/golang/test-fixtures/archs/binaries.fingerprint
-      - syft/pkg/cataloger/redhat/test-fixtures/rpms.fingerprint
-      - syft/pkg/cataloger/kernel/test-fixtures/cache.fingerprint
+      - '**/test-fixtures/**/*.fingerprint'
       - test/install/cache.fingerprint
-      - test/cli/test-fixtures/cache.fingerprint
     cmds:
-      # for EXECUTABLE unit test fixtures
-      - "cd syft/file/cataloger/executable/test-fixtures/elf && make cache.fingerprint"
-      - "cd syft/file/cataloger/executable/test-fixtures/shared-info && make cache.fingerprint"
-      # for IMAGE integration test fixtures
-      - "cd cmd/syft/internal/test/integration/test-fixtures && make cache.fingerprint"
-      # for BINARY unit test fixtures
-      - "cd syft/pkg/cataloger/binary/test-fixtures && make cache.fingerprint"
-      # for JAVA BUILD unit test fixtures
-      - "cd syft/pkg/cataloger/java/test-fixtures/java-builds && make cache.fingerprint"
-      # for GO BINARY unit test fixtures
-      - "cd syft/pkg/cataloger/golang/test-fixtures/archs && make binaries.fingerprint"
-      # for RPM unit test fixtures
-      - "cd syft/pkg/cataloger/redhat/test-fixtures && make rpms.fingerprint"
-      # for Kernel unit test fixtures
-      - "cd syft/pkg/cataloger/kernel/test-fixtures && make cache.fingerprint"
-      # for INSTALL test fixtures
-      - "cd test/install && make cache.fingerprint"
-      # for CLI test fixtures
-      - "cd test/cli/test-fixtures && make cache.fingerprint"
+      - |
+        BOLD='\033[1m'
+        YELLOW='\033[0;33m'
+        RESET='\033[0m'
 
-  fixtures:
-    desc: Generate test fixtures
+        echo -e "${YELLOW}creating fingerprint files for non-docker fixtures...${RESET}"        
+        for dir in $(find . -type d -name 'test-fixtures'); do
+          if [ -f "$dir/Makefile" ]; then
+            # for debugging...
+            #echo -e "${YELLOW}• calculating fingerprints in $dir... ${RESET}"
+            
+            (make -C "$dir" fingerprint)
+          fi
+        done
+
+        # for debugging...
+        # echo -e "generated all fixture fingerprints"
+
+      - .github/scripts/fingerprint_docker_fixtures.py
+      - |
+        # if DOWNLOAD_TEST_FIXTURE_CACHE is set to 'false', then we don't need to calculate the fingerprint for the cache
+        if [ "$DOWNLOAD_TEST_FIXTURE_CACHE" = "false" ]; then
+          exit 0
+        fi
+        .github/scripts/find_cache_paths.py {{ .CACHE_PATHS_FILE }} > /dev/null
+
+
+  refresh-fixtures:
+    desc: Clear and fetch all test fixture cache
+    aliases:
+      - fixtures
+    silent: true
+    deps:
+      - tools
     cmds:
-      - "cd syft/file/cataloger/executable/test-fixtures/elf && make"
-      - "cd syft/file/cataloger/executable/test-fixtures/shared-info && make"
-      - "cd syft/pkg/cataloger/java/test-fixtures/java-builds && make"
-      - "cd syft/pkg/cataloger/redhat/test-fixtures && make"
-      - "cd syft/pkg/cataloger/binary/test-fixtures && make"
+      - |
+        BOLD='\033[1m'
+        PURPLE='\033[0;35m'
+        RESET='\033[0m'
+        
+        # if DOWNLOAD_TEST_FIXTURE_CACHE is set to 'false', then skip the cache download and always build
+        if [ "$DOWNLOAD_TEST_FIXTURE_CACHE" = "false" ]; then
+            echo -e "${BOLD}${PURPLE}skipping cache download, rebuilding cache...${RESET}"
+            {{ .TASK }} build-fixtures
+            exit 0
+        fi
+        
+        LATEST_FINGERPRINT=$(docker manifest inspect {{ .CACHE_IMAGE }} | {{ .YQ }} -r '.annotations.fingerprint')
+
+        echo "latest cache:      $LATEST_FINGERPRINT"
+        
+        if [ -f {{ .LAST_CACHE_PULL_FILE }} ]; then
+          LAST_PULL_FINGERPRINT=$(cat {{ .LAST_CACHE_PULL_FILE }} | {{ .YQ }} -r '.digest')
+        else
+          echo -e "${BOLD}${PURPLE}empty cache, downloading cache...${RESET}"
+          {{ .TASK }} download-test-fixture-cache
+          exit 0
+        fi
+        
+        {{ .TASK }} fingerprints
+
+        WANT_FINGERPRINT=$(cat {{ .CACHE_PATHS_FILE }} | {{ .YQ }} -r '.digest')        
+
+        echo "desired cache:     $WANT_FINGERPRINT"
+        echo "last pulled cache: $LAST_PULL_FINGERPRINT"
+  
+        # if we already have the latest cache, skip the refresh
+        if [ "$LAST_PULL_FINGERPRINT" = "$WANT_FINGERPRINT" ]; then
+            echo -e "${BOLD}${PURPLE}already have the latest cache (skipping cache download)${RESET}"
+            exit 0
+        fi
+  
+        # at this point we only refresh the cache if we want the same cache that is currently available.
+        # we don't by default refresh the cache if the cache if it is simply different from what we have,
+        # because we may be working on a code change that doesn't require a cache refresh (but could trigger one,
+        # which would be annoying to deal with in a development workflow).
+  
+        if [ "$LATEST_FINGERPRINT" = "$WANT_FINGERPRINT" ]; then
+          echo -e "${BOLD}${PURPLE}found newer cache! downloading cache...${RESET}"
+          {{ .TASK }} download-test-fixture-cache
+        else
+          echo -e "${BOLD}${PURPLE}found different cache, but isn't clear if it's newer (skipping cache download and manually building)${RESET}"
+        
+          {{ .YQ }} eval '.paths[] | "\(.digest) \(.path)"' {{ .LAST_CACHE_PULL_FILE }} > .tmp/last_cache_lines
+          {{ .YQ }} eval '.paths[] | "\(.digest) \(.path)"' {{ .CACHE_PATHS_FILE }} > .tmp/cache_lines
+          diff .tmp/last_cache_lines .tmp/cache_lines || true
+        
+          echo -e "${BOLD}${PURPLE}diff with more context...${RESET}"
+        
+          diff -U10000 {{ .LAST_CACHE_PULL_FILE }} {{ .CACHE_PATHS_FILE }} || true
+        
+          echo -e "${BOLD}${PURPLE}detected changes to input material, manually building fixtures...${RESET}"
+        
+          {{ .TASK }} build-fixtures
+        fi
+
+  build-fixtures:
+    desc: Generate all non-docker test fixtures
+    silent: true
+    # this will look for `test-fixtures/Makefile` and invoke the `fixtures` target to generate any and all test fixtures
+    cmds:
+      - |
+        BOLD='\033[1m'
+        YELLOW='\033[0;33m'
+        RESET='\033[0m'
+        
+        # Use a for loop with command substitution to avoid subshell issues
+        for dir in $(find . -type d -name 'test-fixtures'); do
+          if [ -f "$dir/Makefile" ]; then
+            echo -e "${YELLOW}${BOLD}generating fixtures in $dir${RESET}"
+            (make -C "$dir" fixtures)
+          fi
+        done
+        echo -e "${BOLD}generated all fixtures${RESET}"
+
+  download-test-fixture-cache:
+    desc: Download test fixture cache from ghcr.io
+    deps: [tools, clean-cache]
+    vars:
+      CACHE_DIGEST:
+        sh: docker manifest inspect {{ .CACHE_IMAGE }} | {{ .YQ }} -r '.annotations.fingerprint'
+    cmds:
+      - silent: true
+        cmd: |
+          # if oras cache is > 4 GB, delete it
+          if [ -d {{ .ORAS_CACHE }} ]; then
+            total_size=$(du -c {{ .ORAS_CACHE }} | grep total | awk '{print $1}')
+            if [ "$total_size" -gt 4194304 ]; then
+              echo 'deleting oras cache'
+              rm -rf {{ .ORAS_CACHE }}
+            fi
+          fi
+      - "ORAS_CACHE={{ .ORAS_CACHE }} {{ .ORAS }} pull {{ .CACHE_IMAGE }}"
+      - "cp {{ .CACHE_PATHS_FILE }} {{ .LAST_CACHE_PULL_FILE }}"
+
+  upload-test-fixture-cache:
+    desc: Upload the test fixture cache to ghcr.io
+    deps: [tools, fingerprints]
+    silent: true
+    cmd: |
+      set -eu
+      oras_command="{{ .ORAS }} push {{ .CACHE_IMAGE }}"
+
+      paths=$(cat {{ .CACHE_PATHS_FILE }} | {{ .YQ }} -r '.paths[].path')      
+      for path in $paths; do
+        oras_command+=" $path"
+      done
+      oras_command+=" {{ .CACHE_PATHS_FILE }}"
+      
+      oras_command+=" --annotation org.opencontainers.image.source=https://github.com/{{ .OWNER }}/{{ .PROJECT }}"
+      oras_command+=" --annotation fingerprint=$(cat {{ .CACHE_PATHS_FILE }} | {{ .YQ }} -r '.digest')"
+    
+      echo "Executing: $oras_command"
+      eval $oras_command
 
   show-test-image-cache:
     silent: true
     cmds:
-      - "echo '\nDocker daemon cache:'"
+      - "echo 'Docker daemon cache:'"
       - "docker images --format '{{`{{.ID}}`}} {{`{{.Repository}}`}}:{{`{{.Tag}}`}}' | grep stereoscope-fixture- | sort"
       - "echo '\nTar cache:'"
-      - 'find . -type f -wholename "**/test-fixtures/snapshot/*" | sort'
+      - 'find . -type f -wholename "**/test-fixtures/cache/stereoscope-fixture-*.tar" | sort'
 
+  check-docker-cache:
+    desc: Ensure docker caches aren't using too much disk space
+    silent: true
+    cmd: |
+      total_size=$(find . | grep cache | grep tar | xargs du -c | grep total | awk '{print $1}')
+      find . | grep cache | grep tar | xargs du
+      echo "total $total_size KB"
+      
+      if [ "$total_size" -gt 1048576 ]; then
+        echo 'docker cache is larger than 1GB'
+        exit 1
+      fi
 
   ## install.sh testing targets #################################
 
@@ -489,8 +625,31 @@ tasks:
       - "rm -rf {{ .SNAPSHOT_DIR }}"
       - "rm -rf {{ .TMP_DIR }}/goreleaser.yaml"
 
-  clean-cache:
-    desc: Remove all docker cache and local image tar cache
+  clean-docker-cache:
+    desc: Remove all docker cache tars and images from the daemon
     cmds:
-      - 'find . -type f -wholename "**/test-fixtures/cache/stereoscope-fixture-*.tar" -delete'
-      - "docker images --format '{{`{{.ID}}`}} {{`{{.Repository}}`}}' | grep stereoscope-fixture- | awk '{print $$1}' | uniq | xargs -r docker rmi --force"
+      - find . -type d -wholename "**/test-fixtures/cache" | xargs rm -rf
+      - docker images --format '{{`{{.ID}}`}} {{`{{.Repository}}`}}' | grep stereoscope-fixture- | awk '{print $1}' | uniq | xargs -r docker rmi --force
+
+  clean-oras-cache:
+    desc: Remove all cache for oras commands
+    cmd: rm -rf {{ .ORAS_CACHE }}
+
+  clean-cache:
+    desc: Remove all image docker tar cache, images from the docker daemon, and ephemeral test fixtures
+    cmds:
+      - task: clean-docker-cache
+      - |
+        BOLD='\033[1m'
+        YELLOW='\033[0;33m'
+        RESET='\033[0m'
+        
+        # Use a for loop with command substitution to avoid subshell issues
+        for dir in $(find . -type d -name 'test-fixtures'); do
+        if [ -f "$dir/Makefile" ]; then
+          echo -e "${YELLOW}${BOLD}deleting ephemeral test fixtures in $dir${RESET}"
+          (make -C "$dir" clean)
+        fi
+        done
+        echo -e "${BOLD}Deleted all ephemeral test fixtures${RESET}"
+      - rm -f {{ .LAST_CACHE_PULL_FILE }} {{ .CACHE_PATHS_FILE }}

cmd/syft/internal/commands/attest.go

@@ -93,14 +93,13 @@ func defaultAttestOutputOptions() options.Output {
 			string(spdxtagvalue.ID),
 		},
 		Outputs: []string{syftjson.ID.String()},
-		OutputFile: options.OutputFile{ // nolint:staticcheck
+		OutputFile: options.OutputFile{ //nolint:staticcheck
 			Enabled: false, // explicitly not allowed
 		},
 		Format: options.DefaultFormat(),
 	}
 }
 
-//nolint:funlen
 func runAttest(ctx context.Context, id clio.Identification, opts *attestOptions, userInput string) error {
 	// TODO: what other validation here besides binary name?
 	if !commandExists(cosignBinName) {

cmd/syft/internal/commands/convert.go

@@ -28,7 +28,6 @@ type ConvertOptions struct {
 	options.UpdateCheck `yaml:",inline" mapstructure:",squash"`
 }
 
-//nolint:dupl
 func Convert(app clio.Application) *cobra.Command {
 	id := app.ID()
 

cmd/syft/internal/commands/scan.go

@@ -80,7 +80,6 @@ func defaultScanOptions() *scanOptions {
 	}
 }
 
-//nolint:dupl
 func Scan(app clio.Application) *cobra.Command {
 	id := app.ID()
 
@@ -161,7 +160,7 @@ func validateArgs(cmd *cobra.Command, args []string, error string) error {
 		if err := cmd.Help(); err != nil {
 			return fmt.Errorf("unable to display help: %w", err)
 		}
-		return fmt.Errorf(error)
+		return fmt.Errorf("%v", error)
 	}
 
 	return cobra.MaximumNArgs(1)(cmd, args)
@@ -396,13 +395,13 @@ func getExplanation(expErr task.ErrInvalidExpression) string {
 
 	if errors.Is(err, task.ErrNamesNotAllowed) {
 		if expErr.Operation == task.SubSelectOperation {
-			return "However, " + err.Error() + ".\nIt seems like you are intending to add a cataloger in addition to the default set." // nolint:goconst
+			return "However, " + err.Error() + ".\nIt seems like you are intending to add a cataloger in addition to the default set."
 		}
-		return "However, " + err.Error() + "." // nolint:goconst
+		return "However, " + err.Error() + "."
 	}
 
 	if errors.Is(err, task.ErrTagsNotAllowed) {
-		return "However, " + err.Error() + ".\nAdding groups of catalogers may result in surprising behavior (create inaccurate SBOMs)." // nolint:goconst
+		return "However, " + err.Error() + ".\nAdding groups of catalogers may result in surprising behavior (create inaccurate SBOMs)."
 	}
 
 	if errors.Is(err, task.ErrAllNotAllowed) {

cmd/syft/internal/options/catalog.go

@@ -11,6 +11,7 @@ import (
 	"github.com/anchore/fangs"
 	intFile "github.com/anchore/syft/internal/file"
 	"github.com/anchore/syft/internal/log"
+	"github.com/anchore/syft/internal/task"
 	"github.com/anchore/syft/syft"
 	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/cataloging/filecataloging"
@@ -36,6 +37,8 @@ type Catalog struct {
 	Scope             string              `yaml:"scope" json:"scope" mapstructure:"scope"`
 	Parallelism       int                 `yaml:"parallelism" json:"parallelism" mapstructure:"parallelism"` // the number of catalog workers to run in parallel
 	Relationships     relationshipsConfig `yaml:"relationships" json:"relationships" mapstructure:"relationships"`
+	Compliance        complianceConfig    `yaml:"compliance" json:"compliance" mapstructure:"compliance"`
+	Enrich            []string            `yaml:"enrich" json:"enrich" mapstructure:"enrich"`
 
 	// ecosystem-specific cataloger configuration
 	Golang      golangConfig      `yaml:"golang" json:"golang" mapstructure:"golang"`
@@ -55,11 +58,12 @@ type Catalog struct {
 var _ interface {
 	clio.FlagAdder
 	clio.PostLoader
-	fangs.FieldDescriber
+	clio.FieldDescriber
 } = (*Catalog)(nil)
 
 func DefaultCatalog() Catalog {
 	return Catalog{
+		Compliance:    defaultComplianceConfig(),
 		Scope:         source.SquashedScope.String(),
 		Package:       defaultPackageConfig(),
 		LinuxKernel:   defaultLinuxKernelConfig(),
@@ -77,6 +81,7 @@ func (cfg Catalog) ToSBOMConfig(id clio.Identification) *syft.CreateSBOMConfig {
 		WithTool(id.Name, id.Version).
 		WithParallelism(cfg.Parallelism).
 		WithRelationshipsConfig(cfg.ToRelationshipsConfig()).
+		WithComplianceConfig(cfg.ToComplianceConfig()).
 		WithSearchConfig(cfg.ToSearchConfig()).
 		WithPackagesConfig(cfg.ToPackagesConfig()).
 		WithFilesConfig(cfg.ToFilesConfig()).
@@ -102,6 +107,13 @@ func (cfg Catalog) ToRelationshipsConfig() cataloging.RelationshipsConfig {
 	}
 }
 
+func (cfg Catalog) ToComplianceConfig() cataloging.ComplianceConfig {
+	return cataloging.ComplianceConfig{
+		MissingName:    cfg.Compliance.MissingName,
+		MissingVersion: cfg.Compliance.MissingVersion,
+	}
+}
+
 func (cfg Catalog) ToFilesConfig() filecataloging.Config {
 	hashers, err := intFile.Hashers(cfg.File.Metadata.Digests...)
 	if err != nil {
@@ -130,9 +142,9 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 	return pkgcataloging.Config{
 		Binary: binary.DefaultClassifierCatalogerConfig(),
 		Golang: golang.DefaultCatalogerConfig().
-			WithSearchLocalModCacheLicenses(cfg.Golang.SearchLocalModCacheLicenses).
+			WithSearchLocalModCacheLicenses(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Go, task.Golang), cfg.Golang.SearchLocalModCacheLicenses)).
 			WithLocalModCacheDir(cfg.Golang.LocalModCacheDir).
-			WithSearchRemoteLicenses(cfg.Golang.SearchRemoteLicenses).
+			WithSearchRemoteLicenses(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Go, task.Golang), cfg.Golang.SearchRemoteLicenses)).
 			WithProxy(cfg.Golang.Proxy).
 			WithNoProxy(cfg.Golang.NoProxy).
 			WithMainModuleVersion(
@@ -142,7 +154,7 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 					WithFromLDFlags(cfg.Golang.MainModuleVersion.FromLDFlags),
 			),
 		JavaScript: javascript.DefaultCatalogerConfig().
-			WithSearchRemoteLicenses(cfg.JavaScript.SearchRemoteLicenses).
+			WithSearchRemoteLicenses(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.JavaScript, task.Node, task.NPM), cfg.JavaScript.SearchRemoteLicenses)).
 			WithNpmBaseURL(cfg.JavaScript.NpmBaseURL),
 		LinuxKernel: kernel.LinuxKernelCatalogerConfig{
 			CatalogModules: cfg.LinuxKernel.CatalogModules,
@@ -151,9 +163,9 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 			GuessUnpinnedRequirements: cfg.Python.GuessUnpinnedRequirements,
 		},
 		JavaArchive: java.DefaultArchiveCatalogerConfig().
-			WithUseMavenLocalRepository(cfg.Java.UseMavenLocalRepository).
+			WithUseMavenLocalRepository(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Java, task.Maven), cfg.Java.UseMavenLocalRepository)).
 			WithMavenLocalRepositoryDir(cfg.Java.MavenLocalRepositoryDir).
-			WithUseNetwork(cfg.Java.UseNetwork).
+			WithUseNetwork(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Java, task.Maven), cfg.Java.UseNetwork)).
 			WithMavenBaseURL(cfg.Java.MavenURL).
 			WithArchiveTraversal(archiveSearch, cfg.Java.MaxParentRecursiveDepth),
 	}
@@ -193,6 +205,9 @@ func (cfg *Catalog) AddFlags(flags clio.FlagSet) {
 	flags.StringArrayVarP(&cfg.SelectCatalogers, "select-catalogers", "",
 		"add, remove, and filter the catalogers to be used")
 
+	flags.StringArrayVarP(&cfg.Enrich, "enrich", "",
+		fmt.Sprintf("enable package data enrichment from local and online sources (options: %s)", strings.Join(publicisedEnrichmentOptions, ", ")))
+
 	flags.StringVarP(&cfg.Source.Name, "source-name", "",
 		"set the name of the target being analyzed")
 
@@ -205,6 +220,10 @@ func (cfg *Catalog) AddFlags(flags clio.FlagSet) {
 
 func (cfg *Catalog) DescribeFields(descriptions fangs.FieldDescriptionSet) {
 	descriptions.Add(&cfg.Parallelism, "number of cataloger workers to run in parallel")
+
+	descriptions.Add(&cfg.Enrich, fmt.Sprintf(`Enable data enrichment operations, which can utilize services such as Maven Central and NPM.
+By default all enrichment is disabled, use: all to enable everything.
+Available options are: %s`, strings.Join(publicisedEnrichmentOptions, ", ")))
 }
 
 func (cfg *Catalog) PostLoad() error {
@@ -215,23 +234,12 @@ func (cfg *Catalog) PostLoad() error {
 		return fmt.Errorf("cannot use both 'catalogers' and 'select-catalogers'/'default-catalogers' flags")
 	}
 
-	flatten := func(l []string) []string {
-		var out []string
-		for _, v := range l {
-			for _, s := range strings.Split(v, ",") {
-				out = append(out, strings.TrimSpace(s))
-			}
-		}
-		sort.Strings(out)
-
-		return out
-	}
-
 	cfg.From = flatten(cfg.From)
 
 	cfg.Catalogers = flatten(cfg.Catalogers)
 	cfg.DefaultCatalogers = flatten(cfg.DefaultCatalogers)
 	cfg.SelectCatalogers = flatten(cfg.SelectCatalogers)
+	cfg.Enrich = flatten(cfg.Enrich)
 
 	// for backwards compatibility
 	cfg.DefaultCatalogers = append(cfg.DefaultCatalogers, cfg.Catalogers...)
@@ -241,5 +249,75 @@ func (cfg *Catalog) PostLoad() error {
 		return fmt.Errorf("bad scope value %q", cfg.Scope)
 	}
 
+	// the binary package exclusion code depends on the file overlap relationships being created upstream in processing
+	if !cfg.Relationships.PackageFileOwnershipOverlap && cfg.Package.ExcludeBinaryOverlapByOwnership {
+		return fmt.Errorf("cannot enable exclude-binary-overlap-by-ownership without enabling package-file-ownership-overlap")
+	}
+
 	return nil
 }
+
+func flatten(commaSeparatedEntries []string) []string {
+	var out []string
+	for _, v := range commaSeparatedEntries {
+		for _, s := range strings.Split(v, ",") {
+			out = append(out, strings.TrimSpace(s))
+		}
+	}
+	sort.Strings(out)
+	return out
+}
+
+var publicisedEnrichmentOptions = []string{
+	"all",
+	task.Golang,
+	task.Java,
+	task.JavaScript,
+}
+
+func enrichmentEnabled(enrichDirectives []string, features ...string) *bool {
+	if len(enrichDirectives) == 0 {
+		return nil
+	}
+
+	enabled := func(features ...string) *bool {
+		for _, directive := range enrichDirectives {
+			enable := true
+			directive = strings.TrimPrefix(directive, "+") // +java and java are equivalent
+			if strings.HasPrefix(directive, "-") {
+				directive = directive[1:]
+				enable = false
+			}
+			for _, feature := range features {
+				if directive == feature {
+					return &enable
+				}
+			}
+		}
+		return nil
+	}
+
+	enableAll := enabled("all")
+	disableAll := enabled("none")
+
+	if disableAll != nil && *disableAll {
+		if enableAll != nil {
+			log.Warn("you have specified to both enable and disable all enrichment functionality, defaulting to disabled")
+		}
+		enableAll = ptr(false)
+	}
+
+	// check for explicit enable/disable of feature names
+	for _, feat := range features {
+		enableFeature := enabled(feat)
+		if enableFeature != nil {
+			return enableFeature
+		}
+	}
+
+	return enableAll
+}
+
+func ptr[T any](val T) *T {
+	return &val
+}

cmd/syft/internal/options/catalog_test.go

@@ -57,6 +57,14 @@ func TestCatalog_PostLoad(t *testing.T) {
 				assert.Empty(t, options.Catalogers)
 			},
 		},
+		{
+			name: "must have package overlap flag when pruning binaries by overlap",
+			options: Catalog{
+				Package:       packageConfig{ExcludeBinaryOverlapByOwnership: true},
+				Relationships: relationshipsConfig{PackageFileOwnershipOverlap: false},
+			},
+			wantErr: assert.Error,
+		},
 	}
 	for _, tt := range tests {
 		t.Run(tt.name, func(t *testing.T) {
@@ -70,3 +78,69 @@ func TestCatalog_PostLoad(t *testing.T) {
 		})
 	}
 }
+
+func Test_enrichmentEnabled(t *testing.T) {
+	tests := []struct {
+		directives string
+		test       string
+		expected   *bool
+	}{
+		{
+			directives: "",
+			test:       "java",
+			expected:   nil,
+		},
+		{
+			directives: "none",
+			test:       "java",
+			expected:   ptr(false),
+		},
+		{
+			directives: "none,+java",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "all,none",
+			test:       "java",
+			expected:   ptr(false),
+		},
+		{
+			directives: "all",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "golang,js",
+			test:       "java",
+			expected:   nil,
+		},
+		{
+			directives: "golang,-js,java",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "golang,js,-java",
+			test:       "java",
+			expected:   ptr(false),
+		},
+		{
+			directives: "all",
+			test:       "java",
+			expected:   ptr(true),
+		},
+		{
+			directives: "all,-java",
+			test:       "java",
+			expected:   ptr(false),
+		},
+	}
+
+	for _, test := range tests {
+		t.Run(test.directives, func(t *testing.T) {
+			got := enrichmentEnabled(flatten([]string{test.directives}), test.test)
+			assert.Equal(t, test.expected, got)
+		})
+	}
+}

cmd/syft/internal/options/compliance.go

@@ -0,0 +1,35 @@
+package options
+
+import (
+	"github.com/anchore/fangs"
+	"github.com/anchore/syft/syft/cataloging"
+)
+
+var (
+	_ fangs.FieldDescriber = (*complianceConfig)(nil)
+	_ fangs.PostLoader     = (*complianceConfig)(nil)
+)
+
+type complianceConfig struct {
+	MissingName    cataloging.ComplianceAction `mapstructure:"missing-name" json:"missing-name" yaml:"missing-name"`
+	MissingVersion cataloging.ComplianceAction `mapstructure:"missing-version" json:"missing-version" yaml:"missing-version"`
+}
+
+func defaultComplianceConfig() complianceConfig {
+	def := cataloging.DefaultComplianceConfig()
+	return complianceConfig{
+		MissingName:    def.MissingName,
+		MissingVersion: def.MissingVersion,
+	}
+}
+
+func (r *complianceConfig) DescribeFields(descriptions fangs.FieldDescriptionSet) {
+	descriptions.Add(&r.MissingName, "action to take when a package is missing a name")
+	descriptions.Add(&r.MissingVersion, "action to take when a package is missing a version")
+}
+
+func (r *complianceConfig) PostLoad() error {
+	r.MissingName = r.MissingName.Parse()
+	r.MissingVersion = r.MissingVersion.Parse()
+	return nil
+}

cmd/syft/internal/options/format.go

@@ -50,7 +50,7 @@ if false, uses the syft-json output for templating (which follows the syft JSON
 
 Note: long term support for this option is not guaranteed (it may change or break at any time)`)
 
-	prettyDescription := `include space indention and newlines
+	prettyDescription := `include space indentation and newlines
 note: inherits default value from 'format.pretty' or 'false' if parent is unset`
 	descriptions.Add(&o.SyftJSON.Pretty, prettyDescription)
 	descriptions.Add(&o.SPDXJSON.Pretty, prettyDescription)

cmd/syft/internal/options/golang.go

@@ -8,9 +8,9 @@ import (
 )
 
 type golangConfig struct {
-	SearchLocalModCacheLicenses bool                          `json:"search-local-mod-cache-licenses" yaml:"search-local-mod-cache-licenses" mapstructure:"search-local-mod-cache-licenses"`
+	SearchLocalModCacheLicenses *bool                         `json:"search-local-mod-cache-licenses" yaml:"search-local-mod-cache-licenses" mapstructure:"search-local-mod-cache-licenses"`
 	LocalModCacheDir            string                        `json:"local-mod-cache-dir" yaml:"local-mod-cache-dir" mapstructure:"local-mod-cache-dir"`
-	SearchRemoteLicenses        bool                          `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
+	SearchRemoteLicenses        *bool                         `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
 	Proxy                       string                        `json:"proxy" yaml:"proxy" mapstructure:"proxy"`
 	NoProxy                     string                        `json:"no-proxy" yaml:"no-proxy" mapstructure:"no-proxy"`
 	MainModuleVersion           golangMainModuleVersionConfig `json:"main-module-version" yaml:"main-module-version" mapstructure:"main-module-version"`
@@ -47,9 +47,9 @@ type golangMainModuleVersionConfig struct {
 func defaultGolangConfig() golangConfig {
 	def := golang.DefaultCatalogerConfig()
 	return golangConfig{
-		SearchLocalModCacheLicenses: def.SearchLocalModCacheLicenses,
+		SearchLocalModCacheLicenses: nil, // this defaults to false, which is the API default
 		LocalModCacheDir:            def.LocalModCacheDir,
-		SearchRemoteLicenses:        def.SearchRemoteLicenses,
+		SearchRemoteLicenses:        nil, // this defaults to false, which is the API default
 		Proxy:                       strings.Join(def.Proxies, ","),
 		NoProxy:                     strings.Join(def.NoProxy, ","),
 		MainModuleVersion: golangMainModuleVersionConfig{

cmd/syft/internal/options/java.go

@@ -6,8 +6,8 @@ import (
 )
 
 type javaConfig struct {
-	UseNetwork              bool   `yaml:"use-network" json:"use-network" mapstructure:"use-network"`
-	UseMavenLocalRepository bool   `yaml:"use-maven-local-repository" json:"use-maven-local-repository" mapstructure:"use-maven-local-repository"`
+	UseNetwork              *bool  `yaml:"use-network" json:"use-network" mapstructure:"use-network"`
+	UseMavenLocalRepository *bool  `yaml:"use-maven-local-repository" json:"use-maven-local-repository" mapstructure:"use-maven-local-repository"`
 	MavenLocalRepositoryDir string `yaml:"maven-local-repository-dir" json:"maven-local-repository-dir" mapstructure:"maven-local-repository-dir"`
 	MavenURL                string `yaml:"maven-url" json:"maven-url" mapstructure:"maven-url"`
 	MaxParentRecursiveDepth int    `yaml:"max-parent-recursive-depth" json:"max-parent-recursive-depth" mapstructure:"max-parent-recursive-depth"`
@@ -17,9 +17,9 @@ func defaultJavaConfig() javaConfig {
 	def := java.DefaultArchiveCatalogerConfig()
 
 	return javaConfig{
-		UseNetwork:              def.UseNetwork,
+		UseNetwork:              nil, // this defaults to false, which is the API default
 		MaxParentRecursiveDepth: def.MaxParentRecursiveDepth,
-		UseMavenLocalRepository: def.UseMavenLocalRepository,
+		UseMavenLocalRepository: nil, // this defaults to false, which is the API default
 		MavenLocalRepositoryDir: def.MavenLocalRepositoryDir,
 		MavenURL:                def.MavenBaseURL,
 	}

cmd/syft/internal/options/javascript.go

@@ -3,7 +3,7 @@ package options
 import "github.com/anchore/clio"
 
 type javaScriptConfig struct {
-	SearchRemoteLicenses bool   `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
+	SearchRemoteLicenses *bool  `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
 	NpmBaseURL           string `json:"npm-base-url" yaml:"npm-base-url" mapstructure:"npm-base-url"`
 }
 

cmd/syft/internal/test/integration/.gitignore

@@ -0,0 +1 @@
+results

cmd/syft/internal/test/integration/all_layers_squashed_comparison_test.go

@@ -7,7 +7,7 @@ import (
 )
 
 func Test_AllLayersIncludesSquashed(t *testing.T) {
-	// This is a verification test for issue #894 (https://github.com/anchore/syft/issues/894)
+	// This is a verification test for issue grype/#894 (https://github.com/anchore/grype/issues/894)
 	allLayers, _ := catalogFixtureImage(t, "image-suse-all-layers", source.AllLayersScope)
 	squashed, _ := catalogFixtureImage(t, "image-suse-all-layers", source.SquashedScope)
 

cmd/syft/internal/test/integration/catalog_packages_cases_test.go

@@ -410,6 +410,14 @@ var dirOnlyTestCases = []testCase{
 			"octo-org/this-repo/.github/workflows/workflow-1.yml": "172239021f7ba04fe7327647b213799853a9eb89",
 		},
 	},
+	{
+		name:        "find opam package",
+		pkgType:     pkg.OpamPkg,
+		pkgLanguage: pkg.OCaml,
+		pkgInfo: map[string]string{
+			"ocaml-base-compiler": "4.14.0",
+		},
+	},
 }
 
 var commonTestCases = []testCase{

cmd/syft/internal/test/integration/catalog_packages_test.go

@@ -52,6 +52,7 @@ func TestPkgCoverageImage(t *testing.T) {
 	definedLanguages.Remove(pkg.Dart.String())
 	definedLanguages.Remove(pkg.Swift.String())
 	definedLanguages.Remove(pkg.Swipl.String())
+	definedLanguages.Remove(pkg.OCaml.String())
 	definedLanguages.Remove(pkg.CPP.String())
 	definedLanguages.Remove(pkg.Haskell.String())
 	definedLanguages.Remove(pkg.Elixir.String())
@@ -78,6 +79,7 @@ func TestPkgCoverageImage(t *testing.T) {
 	definedPkgs.Remove(string(pkg.LinuxKernelModulePkg))
 	definedPkgs.Remove(string(pkg.SwiftPkg))
 	definedPkgs.Remove(string(pkg.SwiplPackPkg))
+	definedPkgs.Remove(string(pkg.OpamPkg))
 	definedPkgs.Remove(string(pkg.GithubActionPkg))
 	definedPkgs.Remove(string(pkg.GithubActionWorkflowPkg))
 

cmd/syft/internal/test/integration/encode_decode_cycle_test.go

@@ -2,7 +2,9 @@ package integration
 
 import (
 	"bytes"
-	"regexp"
+	"os"
+	"path/filepath"
+	"strings"
 	"testing"
 
 	"github.com/google/go-cmp/cmp"
@@ -12,8 +14,6 @@ import (
 
 	"github.com/anchore/syft/cmd/syft/internal/options"
 	"github.com/anchore/syft/syft/format"
-	"github.com/anchore/syft/syft/format/cyclonedxjson"
-	"github.com/anchore/syft/syft/format/cyclonedxxml"
 	"github.com/anchore/syft/syft/format/syftjson"
 	"github.com/anchore/syft/syft/source"
 )
@@ -43,26 +43,27 @@ func TestEncodeDecodeEncodeCycleComparison(t *testing.T) {
 			},
 			json: true,
 		},
-		{
-			name: cyclonedxjson.ID.String(),
-			redactor: func(in []byte) []byte {
-				// unstable values
-				in = regexp.MustCompile(`"(timestamp|serialNumber|bom-ref|ref)":\s*"(\n|[^"])+"`).ReplaceAll(in, []byte(`"$1": "redacted"`))
-				in = regexp.MustCompile(`"(dependsOn)":\s*\[(?:\s|[^]])+]`).ReplaceAll(in, []byte(`"$1": []`))
-				return in
-			},
-			json: true,
-		},
-		{
-			name: cyclonedxxml.ID.String(),
-			redactor: func(in []byte) []byte {
-				// unstable values
-				in = regexp.MustCompile(`(serialNumber|bom-ref|ref)="[^"]+"`).ReplaceAll(in, []byte{})
-				in = regexp.MustCompile(`<timestamp>[^<]+</timestamp>`).ReplaceAll(in, []byte{})
-
-				return in
-			},
-		},
+		// TODO: ignoring the `ref` field though does create stable results to compare, but the SBOM is fundamentally gutted and not worth comparing (find a better redaction or compare method)
+		//{
+		//	name: cyclonedxjson.ID.String(),
+		//	redactor: func(in []byte) []byte {
+		//		// unstable values
+		//		in = regexp.MustCompile(`"(timestamp|serialNumber|bom-ref|ref)":\s*"(\n|[^"])+"`).ReplaceAll(in, []byte(`"$1": "redacted"`))
+		//		in = regexp.MustCompile(`"(dependsOn)":\s*\[(?:\s|[^]])+]`).ReplaceAll(in, []byte(`"$1": []`))
+		//		return in
+		//	},
+		//	json: true,
+		//},
+		//{
+		//	name: cyclonedxxml.ID.String(),
+		//	redactor: func(in []byte) []byte {
+		//		// unstable values
+		//		in = regexp.MustCompile(`(serialNumber|bom-ref|ref)="[^"]+"`).ReplaceAll(in, []byte{})
+		//		in = regexp.MustCompile(`<timestamp>[^<]+</timestamp>`).ReplaceAll(in, []byte{})
+		//
+		//		return in
+		//	},
+		//},
 	}
 
 	opts := options.DefaultOutput()
@@ -112,6 +113,21 @@ func TestEncodeDecodeEncodeCycleComparison(t *testing.T) {
 					diffs := dmp.DiffMain(string(by1), string(by2), true)
 					t.Errorf("diff: %s", dmp.DiffPrettyText(diffs))
 				}
+
+				// write raw IMAGE@NAME-start and IMAGE@NAME-finish to files within the results dir
+				// ... this is helpful for debugging
+				require.NoError(t, os.MkdirAll("results", 0700))
+
+				suffix := "sbom"
+				switch {
+				case strings.Contains(test.name, "json"):
+					suffix = "json"
+				case strings.Contains(test.name, "xml"):
+					suffix = "xml"
+				}
+
+				require.NoError(t, os.WriteFile(filepath.Join("results", image+"@"+test.name+"-start."+suffix), by1, 0600))
+				require.NoError(t, os.WriteFile(filepath.Join("results", image+"@"+test.name+"-finish."+suffix), by2, 0600))
 			}
 		})
 	}

cmd/syft/internal/test/integration/go_compiler_detection_test.go

@@ -35,8 +35,8 @@ func TestGolangCompilerDetection(t *testing.T) {
 			for _, pkg := range packages {
 				foundCompilerVersions[pkg.Version] = struct{}{}
 				foundPURL[pkg.PURL] = struct{}{}
-				for _, cpe := range pkg.CPEs {
-					foundCPE[cpe] = struct{}{}
+				for _, c := range pkg.CPEs {
+					foundCPE[c] = struct{}{}
 				}
 			}
 

cmd/syft/internal/test/integration/package_deduplication_test.go

@@ -1,5 +1,3 @@
-//go:build !arm64
-
 package integration
 
 import (
@@ -7,7 +5,6 @@ import (
 	"testing"
 
 	"github.com/stretchr/testify/assert"
-	"github.com/stretchr/testify/require"
 
 	"github.com/anchore/syft/syft/pkg"
 	"github.com/anchore/syft/syft/source"
@@ -22,41 +19,39 @@ func TestPackageDeduplication(t *testing.T) {
 	}{
 		{
 			scope:        source.AllLayersScope,
-			packageCount: 172, // without deduplication this would be 618
+			packageCount: 178, // without deduplication this would be ~600
 			instanceCount: map[string]int{
-				"basesystem": 1,
-				"wget":       1,
-				"curl":       2, // upgraded in the image
-				"vsftpd":     1,
-				"httpd":      1, // rpm, - we exclude binary
+				"basesystem":   1,
+				"wget":         1,
+				"curl-minimal": 2, // upgraded in the image
+				"vsftpd":       1,
+				"httpd":        1, // rpm, - we exclude binary
 			},
 			locationCount: map[string]int{
-				"basesystem-10.0-7.el7.centos": 4,
-				"curl-7.29.0-59.el7":           1, // from base image
-				"curl-7.29.0-59.el7_9.1":       3, // upgrade
-				"wget-1.14-18.el7_6.1":         3,
-				"vsftpd-3.0.2-29.el7_9":        2,
-				"httpd-2.4.6-97.el7.centos.5":  1,
-				// "httpd-2.4.6":                  1, // binary
+				"basesystem-11-13.el9":               5, // in all layers
+				"curl-minimal-7.76.1-26.el9_3.2.0.1": 2, // base + wget layer
+				"curl-minimal-7.76.1-29.el9_4.1":     3, // curl upgrade layer + all above layers
+				"wget-1.21.1-8.el9_4":                4, // wget + all above layers
+				"vsftpd-3.0.5-5.el9":                 2, // vsftpd + all above layers
+				"httpd-2.4.57-11.el9_4.1":            1, // last layer
 			},
 		},
 		{
 			scope:        source.SquashedScope,
-			packageCount: 170,
+			packageCount: 172,
 			instanceCount: map[string]int{
-				"basesystem": 1,
-				"wget":       1,
-				"curl":       1, // upgraded, but the most recent
-				"vsftpd":     1,
-				"httpd":      1, // rpm, binary is now excluded by overlap
+				"basesystem":   1,
+				"wget":         1,
+				"curl-minimal": 1, // upgraded, but the most recent
+				"vsftpd":       1,
+				"httpd":        1, // rpm, binary is now excluded by overlap
 			},
 			locationCount: map[string]int{
-				"basesystem-10.0-7.el7.centos": 1,
-				"curl-7.29.0-59.el7_9.1":       1, // upgrade
-				"wget-1.14-18.el7_6.1":         1,
-				"vsftpd-3.0.2-29.el7_9":        1,
-				"httpd-2.4.6-97.el7.centos.5":  1,
-				// "httpd-2.4.6":                  1, // binary (excluded)
+				"basesystem-11-13.el9":           1,
+				"curl-minimal-7.76.1-29.el9_4.1": 1, // upgrade
+				"wget-1.21.1-8.el9_4":            1,
+				"vsftpd-3.0.5-5.el9":             1,
+				"httpd-2.4.57-11.el9_4.1":        1,
 			},
 		},
 	}
@@ -75,20 +70,21 @@ func TestPackageDeduplication(t *testing.T) {
 				pkgs := sbom.Artifacts.Packages.PackagesByName(name)
 
 				// with multiple packages with the same name, something is wrong (or this is the wrong fixture)
-				require.Len(t, pkgs, expectedInstanceCount)
+				if assert.Len(t, pkgs, expectedInstanceCount, "unexpected package count for %s", name) {
+					for _, p := range pkgs {
+						nameVersion := fmt.Sprintf("%s-%s", name, p.Version)
+						expectedLocationCount, ok := tt.locationCount[nameVersion]
+						if !ok {
+							t.Errorf("missing name-version: %s", nameVersion)
+							continue
+						}
 
-				for _, p := range pkgs {
-					nameVersion := fmt.Sprintf("%s-%s", name, p.Version)
-					expectedLocationCount, ok := tt.locationCount[nameVersion]
-					if !ok {
-						t.Fatalf("missing name-version: %s", nameVersion)
+						// we should see merged locations (assumption, there was 1 location for each package)
+						assert.Len(t, p.Locations.ToSlice(), expectedLocationCount, "unexpected location count for %s", nameVersion)
+
+						// all paths should match
+						assert.Len(t, p.Locations.CoordinateSet().Paths(), 1, "unexpected location count for %s", nameVersion)
 					}
-
-					// we should see merged locations (assumption, there was 1 location for each package)
-					assert.Len(t, p.Locations.ToSlice(), expectedLocationCount)
-
-					// all paths should match
-					assert.Len(t, p.Locations.CoordinateSet().Paths(), 1)
 				}
 			}
 

cmd/syft/internal/test/integration/sbom_metadata_component_test.go

@@ -0,0 +1,25 @@
+package integration
+
+import (
+	"reflect"
+	"testing"
+
+	"github.com/anchore/syft/syft/pkg"
+	"github.com/anchore/syft/syft/source"
+)
+
+func TestSbomMetadataComponent(t *testing.T) {
+	sbom, _ := catalogFixtureImage(t, "image-sbom-metadata-component", source.SquashedScope, "+sbom-cataloger")
+
+	expectedPkgs := []string{"first-subcomponent", "main-component"}
+	foundPkgs := []string{}
+
+	for sbomPkg := range sbom.Artifacts.Packages.Enumerate(pkg.JavaPkg) {
+		foundPkgs = append(foundPkgs, sbomPkg.Name)
+	}
+
+	// check if both the package in `.metadata.component` and the one in `.components` were found
+	if !reflect.DeepEqual(expectedPkgs, foundPkgs) {
+		t.Errorf("expected packages %v, got %v", expectedPkgs, foundPkgs)
+	}
+}

cmd/syft/internal/test/integration/test-fixtures/Makefile

@@ -1,6 +1,21 @@
-# change these if you want CI to not use previous stored cache
-INTEGRATION_CACHE_BUSTER := "894d8ca"
+FINGERPRINT_FILE := cache.fingerprint
 
-.PHONY: cache.fingerprint
-cache.fingerprint:
-	find image-* -type f -exec md5sum {} + | awk '{print $1}' | sort | tee /dev/stderr | md5sum | tee cache.fingerprint && echo "$(INTEGRATION_CACHE_BUSTER)" >> cache.fingerprint
+.DEFAULT_GOAL := fixtures
+
+# requirement 1: 'fixtures' goal to generate any and all test fixtures
+fixtures:
+	@echo "nothing to do"
+
+# requirement 2: 'fingerprint' goal to determine if the fixture input that indicates any existing cache should be busted
+fingerprint: $(FINGERPRINT_FILE)
+
+# requirement 3: we always need to recalculate the fingerprint based on source regardless of any existing fingerprint
+.PHONY: $(FINGERPRINT_FILE)
+$(FINGERPRINT_FILE):
+	@find image-* -type f -exec sha256sum {} \; | sort -k2 > $(FINGERPRINT_FILE)
+	@#cat $(FINGERPRINT_FILE) | sha256sum | awk '{print $$1}'
+
+# requirement 4: 'clean' goal to remove all generated test fixtures
+.PHONY: clean
+clean:
+	rm -f $(FINGERPRINT_FILE)

cmd/syft/internal/test/integration/test-fixtures/image-golang-compiler/Dockerfile

@@ -1 +1,6 @@
-FROM golang:1.18.10-alpine
+FROM --platform=linux/amd64 golang:1.18.10-alpine
+
+FROM scratch
+
+# we don't need the entire golang toolchain, just a single binary with the stdlib baked in
+COPY --from=0 /usr/local/go/bin/gofmt bin/gofmt

cmd/syft/internal/test/integration/test-fixtures/image-java-no-main-package/Dockerfile

@@ -1,4 +1,4 @@
-FROM jenkins/jenkins:2.346.3-slim-jdk17@sha256:028fbbd9112c60ed086f5197fcba71992317864d27644e5949cf9c52ff4b65f0
+FROM jenkins/jenkins:2.346.3-slim-jdk17@sha256:028fbbd9112c60ed086f5197fcba71992317864d27644e5949cf9c52ff4b65f0 AS base
 
 USER root
 
@@ -12,7 +12,7 @@ RUN apt-get update 2>&1 > /dev/null && apt-get install -y less zip 2>&1 > /dev/n
 
 RUN unzip ../jenkins.war 2>&1 > /dev/null
 
-RUN rm -f ./META-INF/MANIFEST.MF
+RUN rm -rf ./META-INF/MANIFEST.MF ./WEB-INF ./jsbundles ./scripts ./css
 
 WORKDIR /usr/share/jenkins
 
@@ -21,3 +21,7 @@ RUN rm -rf jenkins.war
 RUN cd ./tmp && zip -r ../jenkins.war . && cd ..
 
 RUN rm -rf ./tmp
+
+FROM scratch
+
+COPY --from=base /usr/share/jenkins/jenkins.war /jenkins.war

cmd/syft/internal/test/integration/test-fixtures/image-java-virtualpath-regression/Dockerfile

@@ -1,7 +1,15 @@
-FROM alpine:3.18.3@sha256:7144f7bab3d4c2648d7e59409f15ec52a18006a128c733fcff20d3a4a54ba44a
+FROM alpine:3.18.3@sha256:7144f7bab3d4c2648d7e59409f15ec52a18006a128c733fcff20d3a4a54ba44a AS base
 
 RUN wget https://repo1.maven.org/maven2/org/jvnet/hudson/main/hudson-war/2.2.1/hudson-war-2.2.1.war
 
 RUN mv hudson-war-2.2.1.war hudson.war
 
+# let's make this image a little smaller as to not take up so much disk space
+# we'll only keep the jar metadata files (pom data + manifest) and throw away the rest
+RUN apk add --no-cache python3 py3-pip
+COPY extract.py /extract.py
+RUN python extract.py
 
+FROM scratch
+
+COPY --from=base /slim /

cmd/syft/internal/test/integration/test-fixtures/image-java-virtualpath-regression/extract.py

@@ -0,0 +1,69 @@
+import os
+import zipfile
+import io
+
+ARCHIVE_EXTENSIONS = ('.jar', '.war', '.ear', '.hpi', '.war', '.sar', '.nar', '.par')
+METADATA_FILES = ('pom.xml', 'pom.properties', 'MANIFEST.MF')
+
+
+def slim_archive(archive, output_dir, base_path="", archive_name=""):
+    """
+    extracts metadata files from the archive and creates a slim JAR file
+    containing only these files. handles nested JARs by preserving them.
+    """
+    slim_buffer = io.BytesIO()
+    with zipfile.ZipFile(archive, 'r') as zip_file:
+        with zipfile.ZipFile(slim_buffer, 'w', zipfile.ZIP_DEFLATED) as slim_zip:
+            for file_name in zip_file.namelist():
+                # check for metadata files or nested JARs
+                if file_name.endswith(METADATA_FILES):
+                    # add metadata files directly to the slimmed archive
+                    file_data = zip_file.read(file_name)
+                    slim_zip.writestr(file_name, file_data)
+                elif file_name.endswith(ARCHIVE_EXTENSIONS):
+                    # if it's a nested archive, recursively slim it
+                    nested_archive = io.BytesIO(zip_file.read(file_name))
+                    nested_slim_buffer = io.BytesIO()
+                    slim_archive(
+                        nested_archive,
+                        nested_slim_buffer,
+                        base_path=os.path.join(base_path, os.path.dirname(file_name)),
+                        archive_name=os.path.basename(file_name)
+                    )
+                    # add the slimmed nested archive back to the parent archive
+                    nested_slim_buffer.seek(0)
+                    slim_zip.writestr(file_name, nested_slim_buffer.read())
+
+    # write out the slimmed JAR to the output directory if output_dir is a directory
+    if isinstance(output_dir, str):
+        output_path = os.path.join(output_dir, base_path, archive_name)
+        os.makedirs(os.path.dirname(output_path), exist_ok=True)
+        with open(output_path, 'wb') as f:
+            slim_buffer.seek(0)
+            f.write(slim_buffer.read())
+    else:
+        # if output_dir is a BytesIO buffer (for nested archives), just write to it
+        output_dir.seek(0)
+        output_dir.write(slim_buffer.getvalue())
+
+
+def walk_directory_and_slim_jars(base_dir, output_dir):
+    """
+    recursively walks through a directory tree looking for .jar, .war, .ear,
+    .hpi files and slims them down by keeping only metadata files.
+    """
+    for dirpath, _, filenames in os.walk(base_dir):
+        for filename in filenames:
+            if filename.endswith(ARCHIVE_EXTENSIONS):
+                archive_path = os.path.join(dirpath, filename)
+                print(f"Processing {archive_path}")
+                slim_archive(archive_path, output_dir, os.path.relpath(dirpath, base_dir), filename)
+
+
+# a helper script for slimming down JAR files by keeping only metadata files but still keeping the jar packaging,
+# including nested JARs! Useful for testing purposes.
+if __name__ == "__main__":
+    BASE_DIR = "."
+    OUTPUT_DIR = "./slim"
+    os.makedirs(OUTPUT_DIR, exist_ok=True)
+    walk_directory_and_slim_jars(BASE_DIR, OUTPUT_DIR)

cmd/syft/internal/test/integration/test-fixtures/image-large-apk-data/Dockerfile

@@ -1,4 +1,4 @@
-FROM alpine@sha256:d9a7354e3845ea8466bb00b22224d9116b183e594527fb5b6c3d30bc01a20378
+FROM alpine@sha256:d9a7354e3845ea8466bb00b22224d9116b183e594527fb5b6c3d30bc01a20378 AS base
 
 # we keep these unpinned so that if alpine
 # changes our integration tests can adapt
@@ -6,3 +6,8 @@ RUN apk add --no-cache \
             tzdata \
             vim \
             alpine-sdk
+
+# we don't need the installed bins for this test, only the APK installed metadata
+FROM scratch
+
+COPY --from=base /lib/apk/db/installed /lib/apk/db/installed

cmd/syft/internal/test/integration/test-fixtures/image-mariner-distroless/Dockerfile

@@ -1 +1,8 @@
-FROM mcr.microsoft.com/cbl-mariner/distroless/base:2.0.202205275@sha256:f550c5428df17b145851ad75983aca6d613ad4b51ca7983b2a83e67d0ac91a5d
+FROM mcr.microsoft.com/cbl-mariner/distroless/base:2.0.202205275@sha256:f550c5428df17b145851ad75983aca6d613ad4b51ca7983b2a83e67d0ac91a5d AS base
+
+# let's shoot for smaller test fixtures
+FROM scratch
+
+COPY --from=base /var/lib/rpmmanifest/container-manifest-2 /var/lib/rpmmanifest/container-manifest-2
+COPY --from=base /usr/bin/gencat /usr/bin/gencat
+COPY --from=base /usr/bin/openssl /usr/bin/openssl

cmd/syft/internal/test/integration/test-fixtures/image-owning-package/Dockerfile

@@ -1,3 +1,8 @@
-FROM ubuntu:20.04@sha256:33a5cc25d22c45900796a1aca487ad7a7cb09f09ea00b779e3b2026b4fc2faba
+FROM ubuntu:20.04@sha256:33a5cc25d22c45900796a1aca487ad7a7cb09f09ea00b779e3b2026b4fc2faba AS base
 # this covers rpm-python
 RUN apt-get update && apt-get install -y python-pil=6.2.1-3
+
+# let's save some space...
+FROM scratch
+
+COPY --from=base /var/lib/dpkg/status /var/lib/dpkg/status

cmd/syft/internal/test/integration/test-fixtures/image-photon-all-layers/Dockerfile

@@ -1 +1,5 @@
-FROM photon:5.0-20230729@sha256:4cf2a1ce0a3f4625f13a0becb6b9bccfdb014c565be6e9a2ec4c4aad1ff8a5d9
+FROM photon:5.0-20230729@sha256:4cf2a1ce0a3f4625f13a0becb6b9bccfdb014c565be6e9a2ec4c4aad1ff8a5d9 AS base
+
+FROM scratch
+
+COPY --from=base /usr/lib/sysimage/rpm /usr/lib/sysimage/rpm

cmd/syft/internal/test/integration/test-fixtures/image-pkg-coverage/pkgs/opam/ocaml-base-compiler.4.14.0/opam

@@ -0,0 +1,93 @@
+opam-version: "2.0"
+synopsis: "Official release 4.14.0"
+maintainer: [
+  "David Allsopp <david@tarides.com>"
+  "Florian Angeletti <florian.angeletti@inria.fr>"
+]
+authors: "Xavier Leroy and many contributors"
+license: "LGPL-2.1-or-later WITH OCaml-LGPL-linking-exception"
+homepage: "https://ocaml.org"
+bug-reports: "https://github.com/ocaml/opam-repository/issues"
+depends: [
+  "ocaml" {= "4.14.0" & post}
+  "base-unix" {post}
+  "base-bigarray" {post}
+  "base-threads" {post}
+  "host-arch-arm32" {arch = "arm32" & post}
+  "host-arch-arm64" {arch = "arm64" & post}
+  "host-arch-ppc64" {arch = "ppc64" & post}
+  "host-arch-riscv64" {arch = "riscv64" & post}
+  "host-arch-s390x" {arch = "s390x" & post}
+  "host-arch-x86_32" {os != "win32" & arch = "x86_32" & post}
+  "host-arch-x86_64" {os != "win32" & arch = "x86_64" & post}
+  "host-arch-unknown"
+    {os != "win32" & arch != "arm32" & arch != "arm64" & arch != "ppc64" &
+     arch != "riscv64" &
+     arch != "s390x" &
+     arch != "x86_32" &
+     arch != "x86_64" &
+     post}
+  (("arch-x86_64" {os = "win32" & arch = "x86_64"} &
+    (("system-mingw" & "mingw-w64-shims" {os-distribution = "cygwin" & post}) |
+     "system-msvc")) |
+   ("arch-x86_32" {os = "win32"} &
+    (("system-mingw" & "mingw-w64-shims" {os-distribution = "cygwin" & post}) |
+     "system-msvc")) |
+   "host-system-other" {os != "win32" & post})
+  "ocaml-options-vanilla" {post}
+  "flexdll" {>= "0.36" & os = "win32"}
+]
+conflict-class: "ocaml-core-compiler"
+flags: compiler
+setenv: CAML_LD_LIBRARY_PATH = "%{lib}%/stublibs"
+build: [
+  [
+    "./configure"
+    "--host=x86_64-pc-windows"
+      {system-msvc:installed & arch-x86_64:installed}
+    "--host=x86_64-w64-mingw32"
+      {os-distribution = "cygwin" & system-mingw:installed &
+       arch-x86_64:installed}
+    "--host=i686-pc-windows" {system-msvc:installed & arch-x86_32:installed}
+    "--host=i686-w64-mingw32"
+      {os-distribution = "cygwin" & system-mingw:installed &
+       arch-x86_32:installed}
+    "--prefix=%{prefix}%"
+    "--docdir=%{doc}%/ocaml"
+    "--with-flexdll=%{flexdll:share}%" {os = "win32" & flexdll:installed}
+    "-C"
+    "CC=cc" {os = "openbsd" | os = "macos"}
+    "ASPP=cc -c" {os = "openbsd" | os = "macos"}
+  ]
+  [make "-j%{jobs}%"]
+]
+install: [make "install"]
+build-env: MSYS2_ARG_CONV_EXCL = "*"
+post-messages: [
+  """\
+A failure in the middle of the build may be caused by build parallelism
+   (enabled by default).
+   Please file a bug report at https://github.com/ocaml/opam-repository/issues"""
+    {failure & jobs > "1"}
+  """\
+You can try installing again including --jobs=1
+   to force a sequential build instead."""
+    {failure & jobs > "1" & opam-version >= "2.0.5"}
+]
+dev-repo: "git+https://github.com/ocaml/ocaml#4.14"
+url {
+  src: "https://github.com/ocaml/ocaml/archive/4.14.0.tar.gz"
+  checksum:
+    "sha256=39f44260382f28d1054c5f9d8bf4753cb7ad64027da792f7938344544da155e8"
+}
+extra-source "ocaml-base-compiler.install" {
+  src:
+    "https://raw.githubusercontent.com/ocaml/opam-source-archives/main/patches/ocaml-base-compiler/ocaml-base-compiler.install"
+  checksum: [
+    "sha256=79f2a1a5044a91350a0eb6ce12e261a72a2855c094c425cddf3860e58c486678"
+    "md5=3e969b841df1f51ca448e6e6295cb451"
+  ]
+}
+x-env-path-rewrite: [
+  [CAML_LD_LIBRARY_PATH (";" {os = "win32"} ":" {os != "win32"}) "target"]
+]

cmd/syft/internal/test/integration/test-fixtures/image-sbom-metadata-component/Dockerfile

@@ -0,0 +1,2 @@
+FROM scratch
+COPY test.cdx.json /

cmd/syft/internal/test/integration/test-fixtures/image-sbom-metadata-component/test.cdx.json

@@ -0,0 +1,32 @@
+{
+  "bomFormat" : "CycloneDX",
+  "specVersion" : "1.5",
+  "serialNumber" : "urn:uuid:dc807d4b-0415-35ab-ba61-49b5d39bc2d9",
+  "version" : 1,
+  "metadata" : {
+    "component" : {
+      "name" : "main-component",
+      "version" : "1.2.3",
+      "purl" : "pkg:maven/org.example/main-component@1.2.3",
+      "type" : "library",
+      "bom-ref" : "pkg:maven/org.example/main-component@1.2.3"
+    }
+  },
+  "components" : [
+    {
+      "name" : "first-subcomponent",
+      "version" : "2.3.4",
+      "purl" : "pkg:maven/org.example/first-subcomponent@2.3.4",
+      "type" : "library",
+      "bom-ref" : "pkg:maven/org.example/first-subcomponent@2.3.4"
+    }
+  ],
+  "dependencies" : [
+    {
+      "ref" : "pkg:maven/org.example/main-component-assembly@1.2.3",
+      "dependsOn" : [
+        "pkg:maven/org.example/first-subcomponent@2.3.4"
+      ]
+    }
+  ]
+}

cmd/syft/internal/test/integration/test-fixtures/image-sqlite-rpmdb/Dockerfile

@@ -1 +1,6 @@
-FROM fedora:35@sha256:36af84ba69e21c9ef86a0424a090674c433b2b80c2462e57503886f1d823abe8
+FROM fedora:35@sha256:36af84ba69e21c9ef86a0424a090674c433b2b80c2462e57503886f1d823abe8 AS base
+
+# lets save some space
+FROM scratch
+
+COPY --from=base /var/lib/rpm /var/lib/rpm

cmd/syft/internal/test/integration/test-fixtures/image-suse-all-layers/Dockerfile

@@ -1,2 +1,11 @@
-FROM registry.suse.com/suse/sle15:15.3.17.20.20@sha256:fd657ecbab5ca564d6933e887f6ae8542a9398e6a4b399f352ce10c3a24afc64
+FROM registry.suse.com/suse/sle15:15.3.17.20.20@sha256:fd657ecbab5ca564d6933e887f6ae8542a9398e6a4b399f352ce10c3a24afc64 AS base
 RUN zypper in -y wget
+
+# let's save some space... we really just need an image that has an RPM DB that is linked across layers
+FROM --platform=linux/amd64 busybox:1.36.1
+
+# setup a link /var/lib/rpm -> ../../usr/lib/sysimage/rpm
+RUN mkdir -p /var/lib && ln -s ../../usr/lib/sysimage/rpm /var/lib/rpm
+
+# copy the RPM DB from the SUSE image
+COPY --from=base /usr/lib/sysimage/rpm/Packages.db /usr/lib/sysimage/rpm/Packages.db

cmd/syft/internal/test/integration/test-fixtures/image-test-java-purls/Dockerfile

@@ -1 +1,18 @@
-FROM anchore/test_images:java-1abc58f@sha256:3add9f90e9ed35739cc99b7830767e09eec921052e2412adf4491648c741f066
+FROM docker.io/anchore/test_images:java-88948cc@sha256:dea0e6c24636937f53bdc997d9960c2a18966d1e38bcd8ebd0c395d4e169b806 AS base
+
+# not covered in testing...
+RUN rm /packages/gradle-7.1.1-bin.zip
+
+RUN apk add --no-cache python3 py3-pip
+
+COPY extract.py /extract.py
+
+WORKDIR /
+
+# let's make this image a little smaller as to not take up so much disk space
+# we'll only keep the jar metadata files (pom data + manifest) and throw away the rest
+RUN python extract.py
+
+FROM scratch
+
+COPY --from=base /slim/packages /packages

cmd/syft/internal/test/integration/test-fixtures/image-test-java-purls/extract.py

@@ -0,0 +1,69 @@
+import os
+import zipfile
+import io
+
+ARCHIVE_EXTENSIONS = ('.jar', '.war', '.ear', '.hpi', '.war', '.sar', '.nar', '.par')
+METADATA_FILES = ('pom.xml', 'pom.properties', 'MANIFEST.MF')
+
+
+def slim_archive(archive, output_dir, base_path="", archive_name=""):
+    """
+    extracts metadata files from the archive and creates a slim JAR file
+    containing only these files. handles nested JARs by preserving them.
+    """
+    slim_buffer = io.BytesIO()
+    with zipfile.ZipFile(archive, 'r') as zip_file:
+        with zipfile.ZipFile(slim_buffer, 'w', zipfile.ZIP_DEFLATED) as slim_zip:
+            for file_name in zip_file.namelist():
+                # check for metadata files or nested JARs
+                if file_name.endswith(METADATA_FILES):
+                    # add metadata files directly to the slimmed archive
+                    file_data = zip_file.read(file_name)
+                    slim_zip.writestr(file_name, file_data)
+                elif file_name.endswith(ARCHIVE_EXTENSIONS):
+                    # if it's a nested archive, recursively slim it
+                    nested_archive = io.BytesIO(zip_file.read(file_name))
+                    nested_slim_buffer = io.BytesIO()
+                    slim_archive(
+                        nested_archive,
+                        nested_slim_buffer,
+                        base_path=os.path.join(base_path, os.path.dirname(file_name)),
+                        archive_name=os.path.basename(file_name)
+                    )
+                    # add the slimmed nested archive back to the parent archive
+                    nested_slim_buffer.seek(0)
+                    slim_zip.writestr(file_name, nested_slim_buffer.read())
+
+    # write out the slimmed JAR to the output directory if output_dir is a directory
+    if isinstance(output_dir, str):
+        output_path = os.path.join(output_dir, base_path, archive_name)
+        os.makedirs(os.path.dirname(output_path), exist_ok=True)
+        with open(output_path, 'wb') as f:
+            slim_buffer.seek(0)
+            f.write(slim_buffer.read())
+    else:
+        # if output_dir is a BytesIO buffer (for nested archives), just write to it
+        output_dir.seek(0)
+        output_dir.write(slim_buffer.getvalue())
+
+
+def walk_directory_and_slim_jars(base_dir, output_dir):
+    """
+    recursively walks through a directory tree looking for .jar, .war, .ear,
+    .hpi files and slims them down by keeping only metadata files.
+    """
+    for dirpath, _, filenames in os.walk(base_dir):
+        for filename in filenames:
+            if filename.endswith(ARCHIVE_EXTENSIONS):
+                archive_path = os.path.join(dirpath, filename)
+                print(f"Processing {archive_path}")
+                slim_archive(archive_path, output_dir, os.path.relpath(dirpath, base_dir), filename)
+
+
+# a helper script for slimming down JAR files by keeping only metadata files but still keeping the jar packaging,
+# including nested JARs! Useful for testing purposes.
+if __name__ == "__main__":
+    BASE_DIR = "."
+    OUTPUT_DIR = "./slim"
+    os.makedirs(OUTPUT_DIR, exist_ok=True)
+    walk_directory_and_slim_jars(BASE_DIR, OUTPUT_DIR)

cmd/syft/internal/test/integration/test-fixtures/image-vertical-package-dups/Dockerfile

@@ -1,6 +1,27 @@
-FROM centos:7.9.2009@sha256:be65f488b7764ad3638f236b7b515b3678369a5124c47b8d32916d6487418ea4
+FROM --platform=linux/amd64 rockylinux:9.3.20231119@sha256:d644d203142cd5b54ad2a83a203e1dee68af2229f8fe32f52a30c6e1d3c3a9e0 AS base
+
 # modifying the RPM DB multiple times will result in duplicate packages when using all-layers (if there was no de-dup logic)
 # curl is tricky, it already exists in the image and is being upgraded
-RUN yum install -y wget-1.14-18.el7_6.1 curl-7.29.0-59.el7_9.1
-RUN yum install -y vsftpd-3.0.2-29.el7_9
-RUN yum install -y httpd-2.4.6-97.el7.centos.5
+
+# but... we want to make the test image as small as possible, so we are making the changes in stages and then
+# copying the RPM DB from each stage to a final stage in separate layers. This will result in a much smaller image.
+
+FROM base AS stage1
+RUN dnf install -y wget
+
+FROM stage1 AS stage2
+RUN dnf update -y curl-minimal
+
+FROM stage2 AS stage3
+RUN dnf install -y vsftpd
+
+FROM stage3 AS stage4
+RUN dnf install -y httpd
+
+FROM scratch
+
+COPY --from=base /var/lib/rpm /var/lib/rpm
+COPY --from=stage1 /var/lib/rpm /var/lib/rpm
+COPY --from=stage2 /var/lib/rpm /var/lib/rpm
+COPY --from=stage3 /var/lib/rpm /var/lib/rpm
+COPY --from=stage4 /var/lib/rpm /var/lib/rpm

go.mod

@@ -3,43 +3,43 @@ module github.com/anchore/syft
 go 1.22.0
 
 require (
-	github.com/CycloneDX/cyclonedx-go v0.9.0
+	github.com/CycloneDX/cyclonedx-go v0.9.1
 	github.com/Masterminds/semver v1.5.0
-	github.com/Masterminds/sprig/v3 v3.2.3
+	github.com/Masterminds/sprig/v3 v3.3.0
 	github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d
 	github.com/acobaugh/osrelease v0.1.0
 	github.com/anchore/bubbly v0.0.0-20231115134915-def0aba654a9
 	github.com/anchore/clio v0.0.0-20240522144804-d81e109008aa
-	github.com/anchore/fangs v0.0.0-20240508143433-f016b099950f
+	github.com/anchore/fangs v0.0.0-20240903175602-e716ef12c23d
 	github.com/anchore/go-collections v0.0.0-20240216171411-9321230ce537
 	github.com/anchore/go-logger v0.0.0-20230725134548-c21dafa1ec5a
 	github.com/anchore/go-macholibre v0.0.0-20220308212642-53e6d0aaf6fb
 	github.com/anchore/go-testutils v0.0.0-20200925183923-d5f45b0d3c04
 	github.com/anchore/go-version v1.2.2-0.20200701162849-18adb9c92b9b
 	github.com/anchore/packageurl-go v0.1.1-0.20240507183024-848e011fc24f
-	github.com/anchore/stereoscope v0.0.3-0.20240725180315-50ce3be7aa1f
+	github.com/anchore/stereoscope v0.0.3
 	github.com/anmitsu/go-shlex v0.0.0-20200514113438-38f4b401e2be
 	// we are hinting brotli to latest due to warning when installing archiver v3:
 	// go: warning: github.com/andybalholm/brotli@v1.0.1: retracted by module author: occasional panics and data corruption
 	github.com/aquasecurity/go-pep440-version v0.0.0-20210121094942-22b2f8951d46
 	github.com/bmatcuk/doublestar/v4 v4.6.1
-	github.com/charmbracelet/bubbles v0.18.0
-	github.com/charmbracelet/bubbletea v0.26.6
-	github.com/charmbracelet/lipgloss v0.12.1
-	github.com/dave/jennifer v1.7.0
+	github.com/charmbracelet/bubbles v0.20.0
+	github.com/charmbracelet/bubbletea v1.1.1
+	github.com/charmbracelet/lipgloss v0.13.0
+	github.com/dave/jennifer v1.7.1
 	github.com/deitch/magic v0.0.0-20230404182410-1ff89d7342da
 	github.com/distribution/reference v0.6.0
-	github.com/docker/docker v27.1.1+incompatible
+	github.com/docker/docker v27.3.0+incompatible
 	github.com/dustin/go-humanize v1.0.1
 	github.com/elliotchance/phpserialize v1.4.0
 	github.com/facebookincubator/nvdtools v0.1.5
-	github.com/github/go-spdx/v2 v2.3.1
+	github.com/github/go-spdx/v2 v2.3.2
 	github.com/gkampitakis/go-snaps v0.5.7
 	github.com/go-git/go-billy/v5 v5.5.0
 	github.com/go-git/go-git/v5 v5.12.0
 	github.com/go-test/deep v1.1.1
 	github.com/google/go-cmp v0.6.0
-	github.com/google/go-containerregistry v0.20.1
+	github.com/google/go-containerregistry v0.20.2
 	github.com/google/licensecheck v0.3.1
 	github.com/google/uuid v1.6.0
 	github.com/gookit/color v1.5.4
@@ -78,28 +78,29 @@ require (
 	github.com/xeipuuv/gojsonschema v1.2.0
 	github.com/zyedidia/generic v1.2.2-0.20230320175451-4410d2372cb1
 	go.uber.org/goleak v1.3.0
-	golang.org/x/mod v0.20.0
-	golang.org/x/net v0.27.0
+	golang.org/x/mod v0.21.0
+	golang.org/x/net v0.29.0
 	gopkg.in/yaml.v3 v3.0.1
-	modernc.org/sqlite v1.31.1
+	modernc.org/sqlite v1.33.1
 )
 
-require google.golang.org/genproto v0.0.0-20231106174013-bbf56f31fb17 // indirect
+require google.golang.org/genproto v0.0.0-20240213162025-012b6fc9bca9 // indirect
 
 require (
 	github.com/BurntSushi/toml v1.4.0
+	github.com/OneOfOne/xxhash v1.2.8
 	github.com/adrg/xdg v0.5.0
 	github.com/magiconair/properties v1.8.7
 	golang.org/x/exp v0.0.0-20231108232855-2478ac86f678
 )
 
 require (
-	dario.cat/mergo v1.0.0 // indirect
+	dario.cat/mergo v1.0.1 // indirect
 	github.com/AdaLogics/go-fuzz-headers v0.0.0-20230811130428-ced1acdcaa24 // indirect
 	github.com/AdamKorcz/go-118-fuzz-build v0.0.0-20230306123547-8075edf89bb0 // indirect
 	github.com/DataDog/zstd v1.5.5 // indirect
 	github.com/Masterminds/goutils v1.1.1 // indirect
-	github.com/Masterminds/semver/v3 v3.2.0 // indirect
+	github.com/Masterminds/semver/v3 v3.3.0 // indirect
 	github.com/Microsoft/go-winio v0.6.1 // indirect
 	github.com/Microsoft/hcsshim v0.11.4 // indirect
 	github.com/ProtonMail/go-crypto v1.0.0 // indirect
@@ -110,10 +111,8 @@ require (
 	github.com/aymanbagabas/go-osc52/v2 v2.0.1 // indirect
 	github.com/becheran/wildmatch-go v1.0.0 // indirect
 	github.com/charmbracelet/harmonica v0.2.0 // indirect
-	github.com/charmbracelet/x/ansi v0.1.4 // indirect
-	github.com/charmbracelet/x/input v0.1.0 // indirect
-	github.com/charmbracelet/x/term v0.1.1 // indirect
-	github.com/charmbracelet/x/windows v0.1.0 // indirect
+	github.com/charmbracelet/x/ansi v0.2.3 // indirect
+	github.com/charmbracelet/x/term v0.2.0 // indirect
 	github.com/cloudflare/circl v1.3.8 // indirect
 	github.com/containerd/cgroups v1.1.0 // indirect
 	github.com/containerd/containerd v1.7.11 // indirect
@@ -125,7 +124,7 @@ require (
 	github.com/containerd/typeurl/v2 v2.1.1 // indirect
 	github.com/cyphar/filepath-securejoin v0.2.4 // indirect
 	github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc // indirect
-	github.com/docker/cli v27.0.3+incompatible // indirect
+	github.com/docker/cli v27.1.1+incompatible // indirect
 	github.com/docker/distribution v2.8.3+incompatible // indirect
 	github.com/docker/docker-credential-helpers v0.7.0 // indirect
 	github.com/docker/go-connections v0.4.0 // indirect
@@ -136,13 +135,13 @@ require (
 	github.com/emirpasic/gods v1.18.1 // indirect
 	github.com/erikgeiser/coninput v0.0.0-20211004153227-1c3628e74d0f // indirect
 	github.com/felixge/fgprof v0.9.3 // indirect
-	github.com/felixge/httpsnoop v1.0.3 // indirect
+	github.com/felixge/httpsnoop v1.0.4 // indirect
 	github.com/fsnotify/fsnotify v1.7.0 // indirect
 	github.com/gabriel-vasile/mimetype v1.4.4 // indirect
 	github.com/gkampitakis/ciinfo v0.3.0 // indirect
 	github.com/gkampitakis/go-diff v1.3.2 // indirect
 	github.com/go-git/gcfg v1.5.1-0.20230307220236-3a3c6141e376 // indirect
-	github.com/go-logr/logr v1.2.4 // indirect
+	github.com/go-logr/logr v1.4.1 // indirect
 	github.com/go-logr/stdr v1.2.2 // indirect
 	github.com/go-restruct/restruct v1.2.0-alpha // indirect
 	github.com/gogo/protobuf v1.3.2 // indirect
@@ -153,9 +152,8 @@ require (
 	github.com/hashicorp/errwrap v1.1.0 // indirect
 	github.com/hashicorp/golang-lru/v2 v2.0.7 // indirect
 	github.com/hashicorp/hcl v1.0.0 // indirect
-	github.com/huandu/xstrings v1.3.3 // indirect
+	github.com/huandu/xstrings v1.5.0 // indirect
 	github.com/iancoleman/orderedmap v0.0.0-20190318233801-ac98e3ecb4b0 // indirect
-	github.com/imdario/mergo v0.3.15 // indirect
 	github.com/inconshreveable/mousetrap v1.1.0 // indirect
 	github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99 // indirect
 	github.com/kevinburke/ssh_config v1.2.0 // indirect
@@ -169,7 +167,7 @@ require (
 	github.com/mattn/go-colorable v0.1.13 // indirect
 	github.com/mattn/go-isatty v0.0.20 // indirect
 	github.com/mattn/go-localereader v0.0.2-0.20220822084749-2491eb6c1c75 // indirect
-	github.com/mattn/go-runewidth v0.0.15 // indirect
+	github.com/mattn/go-runewidth v0.0.16 // indirect
 	github.com/mgutz/ansi v0.0.0-20200706080929-d51e80ef957d // indirect
 	github.com/mitchellh/copystructure v1.2.0 // indirect
 	github.com/mitchellh/reflectwalk v1.0.2 // indirect
@@ -179,16 +177,15 @@ require (
 	github.com/moby/sys/signal v0.7.0 // indirect
 	github.com/muesli/ansi v0.0.0-20230316100256-276c6243b2f6 // indirect
 	github.com/muesli/cancelreader v0.2.2 // indirect
-	github.com/muesli/reflow v0.3.0 // indirect
 	github.com/muesli/termenv v0.15.2 // indirect
 	github.com/ncruces/go-strftime v0.1.9 // indirect
 	github.com/nwaples/rardecode v1.1.0 // indirect
 	github.com/opencontainers/image-spec v1.1.0 // indirect
-	github.com/opencontainers/runc v1.1.12 // indirect
+	github.com/opencontainers/runc v1.1.14 // indirect
 	github.com/opencontainers/runtime-spec v1.1.0-rc.1 // indirect
 	github.com/opencontainers/selinux v1.11.0 // indirect
 	github.com/pborman/indent v1.2.1 // indirect
-	github.com/pelletier/go-toml/v2 v2.1.0 // indirect
+	github.com/pelletier/go-toml/v2 v2.2.2 // indirect
 	github.com/pierrec/lz4/v4 v4.1.19 // indirect
 	github.com/pjbgf/sha1cd v0.3.0 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
@@ -199,15 +196,15 @@ require (
 	github.com/rogpeppe/go-internal v1.12.0 // indirect
 	github.com/sagikazarmark/locafero v0.4.0 // indirect
 	github.com/sagikazarmark/slog-shim v0.1.0 // indirect
-	github.com/sahilm/fuzzy v0.1.1-0.20230530133925-c48e322e2a8f // indirect
+	github.com/sahilm/fuzzy v0.1.1 // indirect
 	github.com/secDre4mer/pkcs7 v0.0.0-20240322103146-665324a4461d // indirect
-	github.com/shopspring/decimal v1.2.0 // indirect
+	github.com/shopspring/decimal v1.4.0 // indirect
 	github.com/sirupsen/logrus v1.9.3 // indirect
 	github.com/skeema/knownhosts v1.2.2 // indirect
 	github.com/sourcegraph/conc v0.3.0 // indirect
-	github.com/spf13/cast v1.6.0 // indirect
+	github.com/spf13/cast v1.7.0 // indirect
 	github.com/spf13/pflag v1.0.5 // indirect
-	github.com/spf13/viper v1.18.2 // indirect
+	github.com/spf13/viper v1.19.0 // indirect
 	github.com/subosito/gotenv v1.6.0 // indirect
 	github.com/sylabs/sif/v2 v2.17.1 // indirect
 	github.com/sylabs/squashfs v1.0.0 // indirect
@@ -224,21 +221,21 @@ require (
 	github.com/xi2/xz v0.0.0-20171230120015-48954b6210f8 // indirect
 	github.com/xo/terminfo v0.0.0-20220910002029-abceb7e1c41e // indirect
 	go.opencensus.io v0.24.0 // indirect
-	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.45.0 // indirect
-	go.opentelemetry.io/otel v1.19.0 // indirect
-	go.opentelemetry.io/otel/metric v1.19.0 // indirect
-	go.opentelemetry.io/otel/trace v1.19.0 // indirect
+	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.49.0 // indirect
+	go.opentelemetry.io/otel v1.24.0 // indirect
+	go.opentelemetry.io/otel/metric v1.24.0 // indirect
+	go.opentelemetry.io/otel/trace v1.24.0 // indirect
 	go.uber.org/atomic v1.9.0 // indirect
 	go.uber.org/multierr v1.9.0 // indirect
-	golang.org/x/crypto v0.25.0 // indirect
-	golang.org/x/sync v0.7.0 // indirect
-	golang.org/x/sys v0.22.0 // indirect
-	golang.org/x/term v0.22.0 // indirect
-	golang.org/x/text v0.16.0 // indirect
+	golang.org/x/crypto v0.27.0 // indirect
+	golang.org/x/sync v0.8.0 // indirect
+	golang.org/x/sys v0.25.0 // indirect
+	golang.org/x/term v0.24.0 // indirect
+	golang.org/x/text v0.18.0 // indirect
 	golang.org/x/tools v0.21.1-0.20240508182429-e35e4ccd0d2d // indirect
 	golang.org/x/xerrors v0.0.0-20220907171357-04be3eba64a2 // indirect
-	google.golang.org/genproto/googleapis/rpc v0.0.0-20231120223509-83a465c0220f // indirect
-	google.golang.org/grpc v1.59.0 // indirect
+	google.golang.org/genproto/googleapis/rpc v0.0.0-20240314234333-6e1732d8331c // indirect
+	google.golang.org/grpc v1.62.1 // indirect
 	google.golang.org/protobuf v1.33.0 // indirect
 	gopkg.in/ini.v1 v1.67.0 // indirect
 	gopkg.in/warnings.v0 v0.1.2 // indirect

go.sum

@@ -45,8 +45,8 @@ cloud.google.com/go/storage v1.5.0/go.mod h1:tpKbwo567HUNpVclU5sGELwQWBDZ8gh0Zeo
 cloud.google.com/go/storage v1.6.0/go.mod h1:N7U0C8pVQ/+NIKOBQyamJIeKQKkZ+mxpohlUTyfDhBk=
 cloud.google.com/go/storage v1.8.0/go.mod h1:Wv1Oy7z6Yz3DshWRJFhqM/UCfaWIRTdp0RXyy7KQOVs=
 cloud.google.com/go/storage v1.10.0/go.mod h1:FLPqc6j+Ki4BU591ie1oL6qBQGu2Bl/tZ9ullr3+Kg0=
-dario.cat/mergo v1.0.0 h1:AGCNq9Evsj31mOgNPcLyXc+4PNABt905YmuqPYYpBWk=
-dario.cat/mergo v1.0.0/go.mod h1:uNxQE+84aUszobStD9th8a29P2fMDhsBdgRYvZOxGmk=
+dario.cat/mergo v1.0.1 h1:Ra4+bf83h2ztPIQYNP99R6m+Y7KfnARDfID+a+vLl4s=
+dario.cat/mergo v1.0.1/go.mod h1:uNxQE+84aUszobStD9th8a29P2fMDhsBdgRYvZOxGmk=
 dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU=
 github.com/AdaLogics/go-fuzz-headers v0.0.0-20230811130428-ced1acdcaa24 h1:bvDV9vkmnHYOMsOr4WLk+Vo07yKIzd94sVoIqshQ4bU=
 github.com/AdaLogics/go-fuzz-headers v0.0.0-20230811130428-ced1acdcaa24/go.mod h1:8o94RPi1/7XTJvwPpRSzSUedZrtlirdB3r9Z20bi2f8=
@@ -60,8 +60,8 @@ github.com/BurntSushi/toml v1.2.1/go.mod h1:CxXYINrC8qIiEnFrOxCa7Jy5BFHlXnUU2pbi
 github.com/BurntSushi/toml v1.4.0 h1:kuoIxZQy2WRRk1pttg9asf+WVv6tWQuBNVmK8+nqPr0=
 github.com/BurntSushi/toml v1.4.0/go.mod h1:ukJfTF/6rtPPRCnwkur4qwRxa8vTRFBF0uk2lLoLwho=
 github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=
-github.com/CycloneDX/cyclonedx-go v0.9.0 h1:inaif7qD8bivyxp7XLgxUYtOXWtDez7+j72qKTMQTb8=
-github.com/CycloneDX/cyclonedx-go v0.9.0/go.mod h1:NE/EWvzELOFlG6+ljX/QeMlVt9VKcTwu8u0ccsACEsw=
+github.com/CycloneDX/cyclonedx-go v0.9.1 h1:yffaWOZsv77oTJa/SdVZYdgAgFioCeycBUKkqS2qzQM=
+github.com/CycloneDX/cyclonedx-go v0.9.1/go.mod h1:NE/EWvzELOFlG6+ljX/QeMlVt9VKcTwu8u0ccsACEsw=
 github.com/DataDog/datadog-go v3.2.0+incompatible/go.mod h1:LButxg5PwREeZtORoXG3tL4fMGNddJ+vMq1mwgfaqoQ=
 github.com/DataDog/zstd v1.5.5 h1:oWf5W7GtOLgp6bciQYDmhHHjdhYkALu6S/5Ni9ZgSvQ=
 github.com/DataDog/zstd v1.5.5/go.mod h1:g4AWEaM3yOg3HYfnJ3YIawPnVdXJh9QME85blwSAmyw=
@@ -69,16 +69,18 @@ github.com/Masterminds/goutils v1.1.1 h1:5nUrii3FMTL5diU80unEVvNevw1nH4+ZV4DSLVJ
 github.com/Masterminds/goutils v1.1.1/go.mod h1:8cTjp+g8YejhMuvIA5y2vz3BpJxksy863GQaJW2MFNU=
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@@ -113,8 +115,8 @@ github.com/anchore/go-version v1.2.2-0.20200701162849-18adb9c92b9b h1:e1bmaoJfZV
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@@ -155,22 +157,18 @@ github.com/census-instrumentation/opencensus-proto v0.3.0/go.mod h1:f6KPmirojxKA
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@@ -215,8 +213,8 @@ github.com/cpuguy83/go-md2man/v2 v2.0.4/go.mod h1:tgQtvFlXSQOSOSIRvRPT7W67SCa46t
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@@ -227,12 +225,12 @@ github.com/deitch/magic v0.0.0-20230404182410-1ff89d7342da/go.mod h1:B3tI9iGHi4i
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@@ -277,8 +275,8 @@ github.com/fatih/set v0.2.1 h1:nn2CaJyknWE/6txyUDGwysr3G5QC6xWB/PtVjPBbeaA=
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@@ -287,8 +285,8 @@ github.com/fsnotify/fsnotify v1.7.0/go.mod h1:40Bi/Hjc2AVfZrqy+aj+yEI+/bRxZnMJyT
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@@ -315,8 +313,8 @@ github.com/go-kit/kit v0.9.0/go.mod h1:xBxKIO96dXMWWy0MnWVtmwkA9/13aqxPnvrjFYMA2
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@@ -384,8 +382,8 @@ github.com/google/go-cmp v0.5.6/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/
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@@ -411,7 +409,6 @@ github.com/google/pprof v0.0.0-20211214055906-6f57359322fd/go.mod h1:KgnwoLYCZ8I
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@@ -463,8 +460,8 @@ github.com/hashicorp/memberlist v0.2.2/go.mod h1:MS2lj3INKhZjWNqd3N0m3J+Jxf3DAOn
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@@ -473,9 +470,6 @@ github.com/iancoleman/strcase v0.3.0/go.mod h1:iwCmte+B7n89clKwxIoIXy/HfoL7AsD47
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@@ -552,9 +546,8 @@ github.com/mattn/go-isatty v0.0.20/go.mod h1:W+V8PltTTMOvKvAeJH7IuucS94S2C6jfK/D
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@@ -564,7 +557,6 @@ github.com/miekg/dns v1.0.14/go.mod h1:W1PPwlIAgtquWBMBEV9nkV9Cazfe8ScdGz/Lj7v3N
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@@ -577,7 +569,6 @@ github.com/mitchellh/mapstructure v1.1.2/go.mod h1:FVVH3fgwuzCH5S8UJGiWEs2h04kUh
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@@ -603,8 +594,6 @@ github.com/muesli/ansi v0.0.0-20230316100256-276c6243b2f6 h1:ZK8zHtRHOkbHy6Mmr5D
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@@ -620,8 +609,8 @@ github.com/opencontainers/go-digest v1.0.0 h1:apOUWs51W5PlhuyGyz9FCeeBIOUDA/6nW8
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@@ -633,8 +622,8 @@ github.com/pborman/indent v1.2.1/go.mod h1:FitS+t35kIYtB5xWTZAPhnmrxcciEEOdbyrrp
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@@ -673,7 +662,6 @@ github.com/quasilyte/go-ruleguard/dsl v0.3.22 h1:wd8zkOhSNr+I+8Qeciml08ivDt1pSXe
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@@ -692,8 +680,8 @@ github.com/sagikazarmark/locafero v0.4.0 h1:HApY1R9zGo4DBgr7dqsTH/JJxLTTsOt7u6ke
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@@ -711,8 +699,8 @@ github.com/sergi/go-diff v1.1.0/go.mod h1:STckp+ISIX8hZLjrqAeVduY0gWCT9IjLuqbuNX
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@@ -733,10 +721,9 @@ github.com/spf13/afero v1.3.3/go.mod h1:5KUK8ByomD5Ti5Artl0RtHeI5pTF7MIDuXL3yY52
 github.com/spf13/afero v1.6.0/go.mod h1:Ai8FlHk4v/PARR026UzYexafAt9roJ7LcLMAmO6Z93I=
 github.com/spf13/afero v1.11.0 h1:WJQKhtpdm3v2IzqG8VMqrr6Rf3UYpEF239Jy9wNepM8=
 github.com/spf13/afero v1.11.0/go.mod h1:GH9Y3pIexgf1MTIWtNGyogA5MwRIDXGUr+hbWNoBjkY=
-github.com/spf13/cast v1.3.1/go.mod h1:Qx5cxh0v+4UWYiBimWS+eyWzqEqokIECu5etghLkUJE=
 github.com/spf13/cast v1.4.1/go.mod h1:Qx5cxh0v+4UWYiBimWS+eyWzqEqokIECu5etghLkUJE=
-github.com/spf13/cast v1.6.0 h1:GEiTHELF+vaR5dhz3VqZfFSzZjYbgeKDpBxQVS4GYJ0=
-github.com/spf13/cast v1.6.0/go.mod h1:ancEpBxwJDODSW/UG4rDrAqiKolqNNh2DX3mk86cAdo=
+github.com/spf13/cast v1.7.0 h1:ntdiHjuueXFgm5nzDRdOS4yfT43P5Fnud6DH50rz/7w=
+github.com/spf13/cast v1.7.0/go.mod h1:ancEpBxwJDODSW/UG4rDrAqiKolqNNh2DX3mk86cAdo=
 github.com/spf13/cobra v1.3.0/go.mod h1:BrRVncBjOJa/eUcVVm9CE+oC6as8k+VYr4NY7WCi9V4=
 github.com/spf13/cobra v1.8.1 h1:e5/vxKd/rZsfSJMUX1agtjeTDf+qv1/JdBF8gg5k9ZM=
 github.com/spf13/cobra v1.8.1/go.mod h1:wHxEcudfqmLYa8iTfL+OuZPbBZkmvliBWKIezN3kD9Y=
@@ -744,8 +731,8 @@ github.com/spf13/jwalterweatherman v1.1.0/go.mod h1:aNWZUN0dPAAO/Ljvb5BEdw96iTZ0
 github.com/spf13/pflag v1.0.5 h1:iy+VFUOCP1a+8yFto/drg2CJ5u0yRoB7fZw3DKv/JXA=
 github.com/spf13/pflag v1.0.5/go.mod h1:McXfInJRrz4CZXVZOBLb0bTZqETkiAhM9Iw0y3An2Bg=
 github.com/spf13/viper v1.10.0/go.mod h1:SoyBPwAtKDzypXNDFKN5kzH7ppppbGZtls1UpIy5AsM=
-github.com/spf13/viper v1.18.2 h1:LUXCnvUvSM6FXAsj6nnfc8Q2tp1dIgUfY9Kc8GsSOiQ=
-github.com/spf13/viper v1.18.2/go.mod h1:EKmWIqdnk5lOcmR72yw6hS+8OPYcwD0jteitLMVB+yk=
+github.com/spf13/viper v1.19.0 h1:RWq5SEjt8o25SROyN3z2OrDB9l7RPd3lwTWU8EcEdcI=
+github.com/spf13/viper v1.19.0/go.mod h1:GQUN9bilAbhU/jgc1bKs99f/suXKeUMct8Adx5+Ntkg=
 github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
 github.com/stretchr/objx v0.1.1/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
 github.com/stretchr/objx v0.4.0/go.mod h1:YvHI0jy2hoMjB+UWwv71VJQ9isScKT/TqJzVSSt89Yw=
@@ -837,20 +824,20 @@ go.opencensus.io v0.22.5/go.mod h1:5pWMHQbX5EPX2/62yrJeAkowc+lfs/XD7Uxpq3pI6kk=
 go.opencensus.io v0.23.0/go.mod h1:XItmlyltB5F7CS4xOC1DcqMoFqwtC6OG2xF7mCv7P7E=
 go.opencensus.io v0.24.0 h1:y73uSU6J157QMP2kn2r30vwW1A2W2WFwSCGnAVxeaD0=
 go.opencensus.io v0.24.0/go.mod h1:vNK8G9p7aAivkbmorf4v+7Hgx+Zs0yY+0fOtgBfjQKo=
-go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.45.0 h1:x8Z78aZx8cOF0+Kkazoc7lwUNMGy0LrzEMxTm4BbTxg=
-go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.45.0/go.mod h1:62CPTSry9QZtOaSsE3tOzhx6LzDhHnXJ6xHeMNNiM6Q=
-go.opentelemetry.io/otel v1.19.0 h1:MuS/TNf4/j4IXsZuJegVzI1cwut7Qc00344rgH7p8bs=
-go.opentelemetry.io/otel v1.19.0/go.mod h1:i0QyjOq3UPoTzff0PJB2N66fb4S0+rSbSB15/oyH9fY=
+go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.49.0 h1:jq9TW8u3so/bN+JPT166wjOI6/vQPF6Xe7nMNIltagk=
+go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.49.0/go.mod h1:p8pYQP+m5XfbZm9fxtSKAbM6oIllS7s2AfxrChvc7iw=
+go.opentelemetry.io/otel v1.24.0 h1:0LAOdjNmQeSTzGBzduGe/rU4tZhMwL5rWgtp9Ku5Jfo=
+go.opentelemetry.io/otel v1.24.0/go.mod h1:W7b9Ozg4nkF5tWI5zsXkaKKDjdVjpD4oAt9Qi/MArHo=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.19.0 h1:Mne5On7VWdx7omSrSSZvM4Kw7cS7NQkOOmLcgscI51U=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.19.0/go.mod h1:IPtUMKL4O3tH5y+iXVyAXqpAwMuzC1IrxVS81rummfE=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.19.0 h1:IeMeyr1aBvBiPVYihXIaeIZba6b8E1bYp7lbdxK8CQg=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.19.0/go.mod h1:oVdCUtjq9MK9BlS7TtucsQwUcXcymNiEDjgDD2jMtZU=
-go.opentelemetry.io/otel/metric v1.19.0 h1:aTzpGtV0ar9wlV4Sna9sdJyII5jTVJEvKETPiOKwvpE=
-go.opentelemetry.io/otel/metric v1.19.0/go.mod h1:L5rUsV9kM1IxCj1MmSdS+JQAcVm319EUrDVLrt7jqt8=
+go.opentelemetry.io/otel/metric v1.24.0 h1:6EhoGWWK28x1fbpA4tYTOWBkPefTDQnb8WSGXlc88kI=
+go.opentelemetry.io/otel/metric v1.24.0/go.mod h1:VYhLe1rFfxuTXLgj4CBiyz+9WYBA8pNGJgDcSFRKBco=
 go.opentelemetry.io/otel/sdk v1.19.0 h1:6USY6zH+L8uMH8L3t1enZPR3WFEmSTADlqldyHtJi3o=
 go.opentelemetry.io/otel/sdk v1.19.0/go.mod h1:NedEbbS4w3C6zElbLdPJKOpJQOrGUJ+GfzpjUvI0v1A=
-go.opentelemetry.io/otel/trace v1.19.0 h1:DFVQmlVbfVeOuBRrwdtaehRrWiL1JoVs9CPIQ1Dzxpg=
-go.opentelemetry.io/otel/trace v1.19.0/go.mod h1:mfaSyvGyEJEI0nyV2I4qhNQnbBOUUmYZpYojqMnX2vo=
+go.opentelemetry.io/otel/trace v1.24.0 h1:CsKnnL4dUAr/0llH9FKuc698G04IrpWV0MQA/Y1YELI=
+go.opentelemetry.io/otel/trace v1.24.0/go.mod h1:HPc3Xr/cOApsBI154IU0OI0HJexz+aw5uPdbs3UCjNU=
 go.opentelemetry.io/proto/otlp v0.7.0/go.mod h1:PqfVotwruBrMGOCsRd/89rSnXhoiJIqeYNgFYFoEGnI=
 go.opentelemetry.io/proto/otlp v1.0.0 h1:T0TX0tmXU8a3CbNXzEKGeU5mIVOdf0oykP+u2lIVU/I=
 go.opentelemetry.io/proto/otlp v1.0.0/go.mod h1:Sy6pihPLfYHkr3NkUbEhGHFhINUSI/v80hjKIs5JXpM=
@@ -875,11 +862,10 @@ golang.org/x/crypto v0.0.0-20200622213623-75b288015ac9/go.mod h1:LzIPMQfyMNhhGPh
 golang.org/x/crypto v0.0.0-20210817164053-32db794688a5/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc=
 golang.org/x/crypto v0.0.0-20210921155107-089bfa567519/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc=
 golang.org/x/crypto v0.0.0-20220622213112-05595931fe9d/go.mod h1:IxCIyHEi3zRg3s0A5j5BB6A9Jmi73HwBIUl50j+osU4=
-golang.org/x/crypto v0.3.0/go.mod h1:hebNnKkNXi2UzZN1eVRvBB7co0a+JxK6XbPiWVs/3J4=
 golang.org/x/crypto v0.3.1-0.20221117191849-2c476679df9a/go.mod h1:hebNnKkNXi2UzZN1eVRvBB7co0a+JxK6XbPiWVs/3J4=
 golang.org/x/crypto v0.7.0/go.mod h1:pYwdfH91IfpZVANVyUOhSIPZaFoJGxTFbZhFTx+dXZU=
-golang.org/x/crypto v0.25.0 h1:ypSNr+bnYL2YhwoMt2zPxHFmbAN1KZs/njMG3hxUp30=
-golang.org/x/crypto v0.25.0/go.mod h1:T+wALwcMOSE0kXgUAnPAHqTLW+XHgcELELW8VaDgm/M=
+golang.org/x/crypto v0.27.0 h1:GXm2NjJrPaiv/h1tb2UH8QfgC/hOf/+z0p6PT8o1w7A=
+golang.org/x/crypto v0.27.0/go.mod h1:1Xngt8kV6Dvbssa53Ziq6Eqn0HqbZi5Z6R0ZpwQzt70=
 golang.org/x/exp v0.0.0-20190121172915-509febef88a4/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=
 golang.org/x/exp v0.0.0-20190306152737-a1d7652674e8/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=
 golang.org/x/exp v0.0.0-20190510132918-efd6b22b2522/go.mod h1:ZjyILWgesfNpC6sMxTJOJm9Kp84zZh5NQWvqDGG3Qr8=
@@ -920,8 +906,8 @@ golang.org/x/mod v0.4.2/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
 golang.org/x/mod v0.5.0/go.mod h1:5OXOZSfqPIIbmVBIIKWRFfZjPR0E5r58TLhUjH0a2Ro=
 golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4/go.mod h1:jJ57K6gSWd91VN4djpZkiMVwK6gcyfeH4XE8wZrZaV4=
 golang.org/x/mod v0.8.0/go.mod h1:iBbtSCu2XBx23ZKBPSOrRkjjQPZFPuis4dIYUhu/chs=
-golang.org/x/mod v0.20.0 h1:utOm6MM3R3dnawAiJgn0y+xvuYRsm1RKM/4giyfDgV0=
-golang.org/x/mod v0.20.0/go.mod h1:hTbmBsO62+eylJbnUtE2MGJUyE7QWk4xUqPFrRgJ+7c=
+golang.org/x/mod v0.21.0 h1:vvrHzRwRfVKSiLrG+d4FMl/Qi4ukBCE6kZlTUkDYRT0=
+golang.org/x/mod v0.21.0/go.mod h1:6SkKJ3Xj0I0BrPOZoBy3bdMptDDU9oJrpohJ3eWZ1fY=
 golang.org/x/net v0.0.0-20180724234803-3673e40ba225/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=
 golang.org/x/net v0.0.0-20180826012351-8a410e7b638d/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=
 golang.org/x/net v0.0.0-20181023162649-9b4f9f5ad519/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=
@@ -968,8 +954,8 @@ golang.org/x/net v0.0.0-20220722155237-a158d28d115b/go.mod h1:XRhObCWvk6IyKnWLug
 golang.org/x/net v0.2.0/go.mod h1:KqCZLdyyvdV855qA2rE3GC2aiw5xGR5TEjj8smXukLY=
 golang.org/x/net v0.6.0/go.mod h1:2Tu9+aMcznHK/AK1HMvgo6xiTLG5rD5rZLDS+rp2Bjs=
 golang.org/x/net v0.8.0/go.mod h1:QVkue5JL9kW//ek3r6jTKnTFis1tRmNAW2P1shuFdJc=
-golang.org/x/net v0.27.0 h1:5K3Njcw06/l2y9vpGCSdcxWOYHOUk3dVNGDXN+FvAys=
-golang.org/x/net v0.27.0/go.mod h1:dDi0PyhWNoiUOrAS8uXv/vnScO4wnHQO4mj9fn/RytE=
+golang.org/x/net v0.29.0 h1:5ORfpBpCs4HzDYoodCDBbwHzdR5UrLBZ3sOnUJmFoHo=
+golang.org/x/net v0.29.0/go.mod h1:gLkgy8jTGERgjzMic6DS9+SP0ajcu6Xu3Orq/SpETg0=
 golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
 golang.org/x/oauth2 v0.0.0-20190226205417-e64efc72b421/go.mod h1:gOpvHmFTYa4IltrdGE7lF6nIHvwfUNPOp7c8zoXwtLw=
 golang.org/x/oauth2 v0.0.0-20190604053449-0f29369cfe45/go.mod h1:gOpvHmFTYa4IltrdGE7lF6nIHvwfUNPOp7c8zoXwtLw=
@@ -1000,8 +986,8 @@ golang.org/x/sync v0.0.0-20201207232520-09787c993a3a/go.mod h1:RxMgew5VJxzue5/jJ
 golang.org/x/sync v0.0.0-20210220032951-036812b2e83c/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20220722155255-886fb9371eb4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.1.0/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
-golang.org/x/sync v0.7.0 h1:YsImfSBoP9QPYL0xyKJPq0gcaJdG3rInoqxTWbfQu9M=
-golang.org/x/sync v0.7.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk=
+golang.org/x/sync v0.8.0 h1:3NFvSEYkUoMifnESzZl15y791HH1qU2xm6eCJU5ZPXQ=
+golang.org/x/sync v0.8.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk=
 golang.org/x/sys v0.0.0-20180823144017-11551d06cbcc/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
 golang.org/x/sys v0.0.0-20180830151530-49385e6e1522/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
 golang.org/x/sys v0.0.0-20180905080454-ebe1bf3edb33/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
@@ -1081,15 +1067,15 @@ golang.org/x/sys v0.2.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.3.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.5.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.22.0 h1:RI27ohtqKCnwULzJLqkv897zojh5/DwS/ENaMzUOaWI=
-golang.org/x/sys v0.22.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
+golang.org/x/sys v0.25.0 h1:r+8e+loiHxRqhXVl6ML1nO3l1+oFoWbnlu2Ehimmi34=
+golang.org/x/sys v0.25.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
 golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo=
 golang.org/x/term v0.0.0-20210927222741-03fcf44c2211/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8=
 golang.org/x/term v0.2.0/go.mod h1:TVmDHMZPmdnySmBfhjOoOdhjzdE1h4u1VwSiw2l1Nuc=
 golang.org/x/term v0.5.0/go.mod h1:jMB1sMXY+tzblOD4FWmEbocvup2/aLOaQEp7JmGp78k=
 golang.org/x/term v0.6.0/go.mod h1:m6U89DPEgQRMq3DNkDClhWw02AUbt2daBVO4cn4Hv9U=
-golang.org/x/term v0.22.0 h1:BbsgPEJULsl2fV/AT3v15Mjva5yXKQDyKf+TbDz7QJk=
-golang.org/x/term v0.22.0/go.mod h1:F3qCibpT5AMpCRfhfT53vVJwhLtIVHhB9XDjfFvnMI4=
+golang.org/x/term v0.24.0 h1:Mh5cbb+Zk2hqqXNO7S1iTjEphVL+jb8ZWaqh/g+JWkM=
+golang.org/x/term v0.24.0/go.mod h1:lOBK/LVxemqiMij05LGJ0tzNr8xlmwBRJ81PX6wVLH8=
 golang.org/x/text v0.0.0-20170915032832-14c0d48ead0c/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
 golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
 golang.org/x/text v0.3.1-0.20180807135948-17ff2d5776d2/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
@@ -1102,8 +1088,8 @@ golang.org/x/text v0.3.7/go.mod h1:u+2+/6zg+i71rQMx5EYifcz6MCKuco9NR6JIITiCfzQ=
 golang.org/x/text v0.4.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8=
 golang.org/x/text v0.7.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8=
 golang.org/x/text v0.8.0/go.mod h1:e1OnstbJyHTd6l/uOt8jFFHp6TRDWZR/bV3emEE/zU8=
-golang.org/x/text v0.16.0 h1:a94ExnEXNtEwYLGJSIUxnWoxoRz/ZcCsV63ROupILh4=
-golang.org/x/text v0.16.0/go.mod h1:GhwF1Be+LQoKShO3cGOHzqOgRrGaYc9AvblQOmPVHnI=
+golang.org/x/text v0.18.0 h1:XvMDiNzPAl0jr17s6W9lcaIhGUfUORdGCNsuLmPG224=
+golang.org/x/text v0.18.0/go.mod h1:BuEKDfySbSR4drPmRPG/7iBdf8hvFMuRexcpahXilzY=
 golang.org/x/time v0.0.0-20181108054448-85acf8d2951c/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
 golang.org/x/time v0.0.0-20190308202827-9d24e82272b4/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
 golang.org/x/time v0.0.0-20191024005414-555d28b269f0/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
@@ -1275,12 +1261,12 @@ google.golang.org/genproto v0.0.0-20211129164237-f09f9a12af12/go.mod h1:5CzLGKJ6
 google.golang.org/genproto v0.0.0-20211203200212-54befc351ae9/go.mod h1:5CzLGKJ67TSI2B9POpiiyGha0AjJvZIUgRMt1dSmuhc=
 google.golang.org/genproto v0.0.0-20211206160659-862468c7d6e0/go.mod h1:5CzLGKJ67TSI2B9POpiiyGha0AjJvZIUgRMt1dSmuhc=
 google.golang.org/genproto v0.0.0-20211208223120-3a66f561d7aa/go.mod h1:5CzLGKJ67TSI2B9POpiiyGha0AjJvZIUgRMt1dSmuhc=
-google.golang.org/genproto v0.0.0-20231106174013-bbf56f31fb17 h1:wpZ8pe2x1Q3f2KyT5f8oP/fa9rHAKgFPr/HZdNuS+PQ=
-google.golang.org/genproto v0.0.0-20231106174013-bbf56f31fb17/go.mod h1:J7XzRzVy1+IPwWHZUzoD0IccYZIrXILAQpc+Qy9CMhY=
-google.golang.org/genproto/googleapis/api v0.0.0-20231106174013-bbf56f31fb17 h1:JpwMPBpFN3uKhdaekDpiNlImDdkUAyiJ6ez/uxGaUSo=
-google.golang.org/genproto/googleapis/api v0.0.0-20231106174013-bbf56f31fb17/go.mod h1:0xJLfVdJqpAPl8tDg1ujOCGzx6LFLttXT5NhllGOXY4=
-google.golang.org/genproto/googleapis/rpc v0.0.0-20231120223509-83a465c0220f h1:ultW7fxlIvee4HYrtnaRPon9HpEgFk5zYpmfMgtKB5I=
-google.golang.org/genproto/googleapis/rpc v0.0.0-20231120223509-83a465c0220f/go.mod h1:L9KNLi232K1/xB6f7AlSX692koaRnKaWSR0stBki0Yc=
+google.golang.org/genproto v0.0.0-20240213162025-012b6fc9bca9 h1:9+tzLLstTlPTRyJTh+ah5wIMsBW5c4tQwGTN3thOW9Y=
+google.golang.org/genproto v0.0.0-20240213162025-012b6fc9bca9/go.mod h1:mqHbVIp48Muh7Ywss/AD6I5kNVKZMmAa/QEW58Gxp2s=
+google.golang.org/genproto/googleapis/api v0.0.0-20240311132316-a219d84964c2 h1:rIo7ocm2roD9DcFIX67Ym8icoGCKSARAiPljFhh5suQ=
+google.golang.org/genproto/googleapis/api v0.0.0-20240311132316-a219d84964c2/go.mod h1:O1cOfN1Cy6QEYr7VxtjOyP5AdAuR0aJ/MYZaaof623Y=
+google.golang.org/genproto/googleapis/rpc v0.0.0-20240314234333-6e1732d8331c h1:lfpJ/2rWPa/kJgxyyXM8PrNnfCzcmxJ265mADgwmvLI=
+google.golang.org/genproto/googleapis/rpc v0.0.0-20240314234333-6e1732d8331c/go.mod h1:WtryC6hu0hhx87FDGxWCDptyssuo68sk10vYjF+T9fY=
 google.golang.org/grpc v1.19.0/go.mod h1:mqu4LbDTu4XGKhr4mRzUsmM4RtVoemTSY81AxZiDr8c=
 google.golang.org/grpc v1.20.1/go.mod h1:10oTOabMzJvdu6/UiuZezV6QK5dSlG84ov/aaiqXj38=
 google.golang.org/grpc v1.21.1/go.mod h1:oYelfM1adQP15Ek0mdvEgi9Df8B9CZIaU1084ijfRaM=
@@ -1308,8 +1294,8 @@ google.golang.org/grpc v1.39.1/go.mod h1:PImNr+rS9TWYb2O4/emRugxiyHZ5JyHW5F+RPnD
 google.golang.org/grpc v1.40.0/go.mod h1:ogyxbiOoUXAkP+4+xa6PZSE9DZgIHtSpzjDTB9KAK34=
 google.golang.org/grpc v1.40.1/go.mod h1:ogyxbiOoUXAkP+4+xa6PZSE9DZgIHtSpzjDTB9KAK34=
 google.golang.org/grpc v1.42.0/go.mod h1:k+4IHHFw41K8+bbowsex27ge2rCb65oeWqe4jJ590SU=
-google.golang.org/grpc v1.59.0 h1:Z5Iec2pjwb+LEOqzpB2MR12/eKFhDPhuqW91O+4bwUk=
-google.golang.org/grpc v1.59.0/go.mod h1:aUPDwccQo6OTjy7Hct4AfBPD1GptF4fyUjIkQ9YtF98=
+google.golang.org/grpc v1.62.1 h1:B4n+nfKzOICUXMgyrNd19h/I9oH0L1pizfk1d4zSgTk=
+google.golang.org/grpc v1.62.1/go.mod h1:IWTG0VlJLCh1SkC58F7np9ka9mx/WNkjl4PGJaiq+QE=
 google.golang.org/grpc/cmd/protoc-gen-go-grpc v1.1.0/go.mod h1:6Kw0yEErY5E/yWrBtf03jp27GLLJujG4z/JK95pnjjw=
 google.golang.org/protobuf v0.0.0-20200109180630-ec00e32a8dfd/go.mod h1:DFci5gLYBciE7Vtevhsrf46CRTquxDuWsQurQQe4oz8=
 google.golang.org/protobuf v0.0.0-20200221191635-4d8936d0db64/go.mod h1:kwYJMbMJ01Woi6D6+Kah6886xMZcty6N08ah7+eCXa0=
@@ -1344,7 +1330,6 @@ gopkg.in/yaml.v2 v2.2.3/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.4/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.5/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.8/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
-gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.4.0/go.mod h1:RDklbk79AGWmwhnvt/jBztapEOGDOx6ZbXqjP6csGnQ=
 gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
@@ -1379,8 +1364,8 @@ modernc.org/opt v0.1.3 h1:3XOZf2yznlhC+ibLltsDGzABUGVx8J6pnFMS3E4dcq4=
 modernc.org/opt v0.1.3/go.mod h1:WdSiB5evDcignE70guQKxYUl14mgWtbClRi5wmkkTX0=
 modernc.org/sortutil v1.2.0 h1:jQiD3PfS2REGJNzNCMMaLSp/wdMNieTbKX920Cqdgqc=
 modernc.org/sortutil v1.2.0/go.mod h1:TKU2s7kJMf1AE84OoiGppNHJwvB753OYfNl2WRb++Ss=
-modernc.org/sqlite v1.31.1 h1:XVU0VyzxrYHlBhIs1DiEgSl0ZtdnPtbLVy8hSkzxGrs=
-modernc.org/sqlite v1.31.1/go.mod h1:UqoylwmTb9F+IqXERT8bW9zzOWN8qwAIcLdzeBZs4hA=
+modernc.org/sqlite v1.33.1 h1:trb6Z3YYoeM9eDL1O8do81kP+0ejv+YzgyFo+Gwy0nM=
+modernc.org/sqlite v1.33.1/go.mod h1:pXV2xHxhzXZsgT/RtTFAPY6JJDEvOTcTdwADQCCWD4k=
 modernc.org/strutil v1.2.0 h1:agBi9dp1I+eOnxXeiZawM8F4LawKv4NzGWSaLfyeNZA=
 modernc.org/strutil v1.2.0/go.mod h1:/mdcBmfOibveCTBxUl5B5l6W+TTH1FXPLHZE6bTosX0=
 modernc.org/token v1.1.0 h1:Xl7Ap9dKaEs5kLoOQeQmPWevfnk/DM5qcLcYlA8ys6Y=

internal/cache/README.md

@@ -1,6 +1,6 @@
 # Caching
 
-All caches are created from a global `manager`. By defaut this is a `bypassedCache`, which performs no caching.
+All caches are created from a global `manager`. By default this is a `bypassedCache`, which performs no caching.
 One benefit of this is that tests don't need to worry about caching causing issues unless they explicitly need
 to test the cache and can opt-in using the `cache.TestCache(t)` helper.
 

internal/cache/error_resolver.go

@@ -34,7 +34,7 @@ func (r *errorResolver[T]) Resolve(key string, resolver resolverFunc[T]) (T, err
 		return v.Value, err
 	}
 	if v.Error != "" {
-		return v.Value, fmt.Errorf(v.Error)
+		return v.Value, fmt.Errorf("failed to resolve cache: %s", v.Error)
 	}
 	return v.Value, nil
 }

internal/constants.go

@@ -3,5 +3,5 @@ package internal
 const (
 	// JSONSchemaVersion is the current schema version output by the JSON encoder
 	// This is roughly following the "SchemaVer" guidelines for versioning the JSON schema. Please see schema/json/README.md for details on how to increment.
-	JSONSchemaVersion = "16.0.15"
+	JSONSchemaVersion = "16.0.17"
 )

internal/file/zip_read_closer.go

@@ -6,6 +6,7 @@ import (
 	"errors"
 	"fmt"
 	"io"
+	"math"
 	"os"
 )
 
@@ -52,9 +53,14 @@ func OpenZip(filepath string) (*ZipReadCloser, error) {
 		return nil, fmt.Errorf("unable to seek to beginning of archive: %w", err)
 	}
 
-	size := fi.Size() - int64(offset)
+	if offset > math.MaxInt64 {
+		return nil, fmt.Errorf("archive start offset too large: %v", offset)
+	}
+	offset64 := int64(offset)
 
-	r, err := zip.NewReader(io.NewSectionReader(f, int64(offset), size), size)
+	size := fi.Size() - offset64
+
+	r, err := zip.NewReader(io.NewSectionReader(f, offset64, size), size)
 	if err != nil {
 		return nil, fmt.Errorf("unable to open ZipReadCloser @ %q: %w", filepath, err)
 	}
@@ -95,8 +101,6 @@ type directoryEnd struct {
 }
 
 // note: this is derived from readDirectoryEnd within the archive/zip package
-//
-//nolint:gocognit
 func findArchiveStartOffset(r io.ReaderAt, size int64) (startOfArchive uint64, err error) {
 	// look for directoryEndSignature in the last 1k, then in the last 65k
 	var buf []byte
@@ -150,7 +154,7 @@ func findArchiveStartOffset(r io.ReaderAt, size int64) (startOfArchive uint64, e
 	startOfArchive = uint64(directoryEndOffset) - d.directorySize - d.directoryOffset
 
 	// Make sure directoryOffset points to somewhere in our file.
-	if o := int64(d.directoryOffset); o < 0 || o >= size {
+	if d.directoryOffset >= uint64(size) {
 		return 0, zip.ErrFormat
 	}
 	return startOfArchive, nil

internal/relationship/binary/binary_dependencies.go

@@ -36,8 +36,7 @@ func generateRelationships(resolver file.Resolver, accessor sbomsync.Accessor, i
 				newRelationships.Add(r)
 			}
 		}
-
-		for _, parentPkg := range s.Artifacts.Packages.Sorted(pkg.BinaryPkg) {
+		for _, parentPkg := range allElfPackages(s) {
 			for _, evidentLocation := range parentPkg.Locations.ToSlice() {
 				if evidentLocation.Annotations[pkg.EvidenceAnnotationKey] != pkg.PrimaryEvidenceAnnotation {
 					continue
@@ -101,7 +100,7 @@ func onlyPrimaryEvidenceLocations(p pkg.Package) []file.Location {
 
 func allElfPackages(s *sbom.SBOM) []pkg.Package {
 	var elfPkgs []pkg.Package
-	for _, p := range s.Artifacts.Packages.Sorted(pkg.BinaryPkg) {
+	for _, p := range s.Artifacts.Packages.Sorted() {
 		if !isElfPackage(p) {
 			continue
 		}

internal/relationship/binary/binary_dependencies_test.go

@@ -50,6 +50,22 @@ func TestPackagesToRemove(t *testing.T) {
 	}
 	glibCBinaryELFPackage.SetID()
 
+	glibCBinaryELFPackageAsRPM := pkg.Package{
+		Name: "glibc",
+		Locations: file.NewLocationSet(
+			file.NewLocation(glibcCoordinate.RealPath).WithAnnotation(pkg.EvidenceAnnotationKey, pkg.PrimaryEvidenceAnnotation),
+		),
+		Type: pkg.RpmPkg, // note: the elf package claims it is a RPM, not binary
+		Metadata: pkg.ELFBinaryPackageNoteJSONPayload{
+			Type:       "rpm",
+			Vendor:     "syft",
+			System:     "syftsys",
+			SourceRepo: "https://github.com/someone/somewhere.git",
+			Commit:     "5534c38d0ffef9a3f83154f0b7a7fb6ab0ab6dbb",
+		},
+	}
+	glibCBinaryELFPackageAsRPM.SetID()
+
 	glibCBinaryClassifierPackage := pkg.Package{
 		Name: "glibc",
 		Locations: file.NewLocationSet(
@@ -83,9 +99,15 @@ func TestPackagesToRemove(t *testing.T) {
 			want:     []artifact.ID{glibCBinaryELFPackage.ID()},
 		},
 		{
-			name:     "remove no packages when there is a single binary package",
+			name:     "keep packages that are overlapping rpm --> binary when the binary self identifies as an RPM",
 			resolver: file.NewMockResolverForPaths(glibcCoordinate.RealPath),
-			accessor: newAccessor([]pkg.Package{glibCBinaryELFPackage}, map[file.Coordinates]file.Executable{}, nil),
+			accessor: newAccessor([]pkg.Package{glibCPackage, glibCBinaryELFPackageAsRPM}, map[file.Coordinates]file.Executable{}, nil),
+			want:     []artifact.ID{},
+		},
+		{
+			name:     "remove no packages when there is a single binary package (or self identifying RPM)",
+			resolver: file.NewMockResolverForPaths(glibcCoordinate.RealPath),
+			accessor: newAccessor([]pkg.Package{glibCBinaryELFPackage, glibCBinaryELFPackageAsRPM}, map[file.Coordinates]file.Executable{}, nil),
 			want:     []artifact.ID{},
 		},
 		{
@@ -173,9 +195,9 @@ func TestNewDependencyRelationships(t *testing.T) {
 			file.NewLocation(parallelLibCoordinate.RealPath).WithAnnotation(pkg.EvidenceAnnotationKey, pkg.SupportingEvidenceAnnotation),
 		),
 		Language: "",
-		Type:     pkg.BinaryPkg,
+		Type:     pkg.RpmPkg,
 		Metadata: pkg.ELFBinaryPackageNoteJSONPayload{
-			Type:       "testfixture",
+			Type:       "rpm",
 			Vendor:     "syft",
 			System:     "syftsys",
 			SourceRepo: "https://github.com/someone/somewhere.git",

internal/relationship/exclude_binaries_by_file_ownership_overlap.go

@@ -25,55 +25,102 @@ var (
 	binaryMetadataTypes = []string{
 		reflect.TypeOf(pkg.ELFBinaryPackageNoteJSONPayload{}).Name(),
 		reflect.TypeOf(pkg.BinarySignature{}).Name(),
+		reflect.TypeOf(pkg.JavaVMInstallation{}).Name(),
 	}
 )
 
 func ExcludeBinariesByFileOwnershipOverlap(accessor sbomsync.Accessor) {
 	accessor.WriteToSBOM(func(s *sbom.SBOM) {
 		for _, r := range s.Relationships {
-			if excludeBinaryByFileOwnershipOverlap(r, s.Artifacts.Packages) {
-				s.Artifacts.Packages.Delete(r.To.ID())
-				s.Relationships = RemoveRelationshipsByID(s.Relationships, r.To.ID())
+			if idToRemove := excludeByFileOwnershipOverlap(r, s.Artifacts.Packages); idToRemove != "" {
+				s.Artifacts.Packages.Delete(idToRemove)
+				s.Relationships = RemoveRelationshipsByID(s.Relationships, idToRemove)
 			}
 		}
 	})
 }
 
-// excludeBinaryByFileOwnershipOverlap will remove packages from a collection given the following properties are true
-// 1) the relationship between packages is OwnershipByFileOverlap
-// 2) the parent is an "os" package
-// 3) the child is a synthetic package generated by the binary cataloger
-// 4) the package names are identical
-// This was implemented as a way to help resolve: https://github.com/anchore/syft/issues/931
-func excludeBinaryByFileOwnershipOverlap(r artifact.Relationship, c *pkg.Collection) bool {
+// excludeByFileOwnershipOverlap will remove packages that should be overridden by a more authoritative package,
+// such as an OS package or a package from a cataloger with more specific information being raised up.
+func excludeByFileOwnershipOverlap(r artifact.Relationship, c *pkg.Collection) artifact.ID {
 	if artifact.OwnershipByFileOverlapRelationship != r.Type {
-		return false
+		return ""
 	}
 
 	parent := c.Package(r.From.ID())
 	if parent == nil {
-		return false
-	}
-
-	parentInExclusion := slices.Contains(osCatalogerTypes, parent.Type)
-	if !parentInExclusion {
-		return false
+		return ""
 	}
 
 	child := c.Package(r.To.ID())
 	if child == nil {
-		return false
+		return ""
 	}
 
-	if slices.Contains(binaryCatalogerTypes, child.Type) {
-		return true
+	if idToRemove := identifyOverlappingOSRelationship(parent, child); idToRemove != "" {
+		return idToRemove
+	}
+
+	if idToRemove := identifyOverlappingJVMRelationship(parent, child); idToRemove != "" {
+		return idToRemove
+	}
+
+	return ""
+}
+
+// identifyOverlappingJVMRelationship indicates the package to remove if this is a binary -> binary pkg relationship
+// with a java binary signature package and a more authoritative JVM release package.
+func identifyOverlappingJVMRelationship(parent *pkg.Package, child *pkg.Package) artifact.ID {
+	if !slices.Contains(binaryCatalogerTypes, parent.Type) {
+		return ""
+	}
+
+	if !slices.Contains(binaryCatalogerTypes, child.Type) {
+		return ""
 	}
 
 	if child.Metadata == nil {
-		return false
+		return ""
 	}
 
-	childMetadataType := reflect.TypeOf(child.Metadata)
+	var (
+		foundJVM   bool
+		idToRemove artifact.ID
+	)
+	for _, p := range []*pkg.Package{parent, child} {
+		switch p.Metadata.(type) {
+		case pkg.JavaVMInstallation:
+			foundJVM = true
+		default:
+			idToRemove = p.ID()
+		}
+	}
 
-	return slices.Contains(binaryMetadataTypes, childMetadataType.Name())
+	if foundJVM {
+		return idToRemove
+	}
+
+	return ""
+}
+
+// identifyOverlappingOSRelationship indicates the package ID to remove if this is an OS pkg -> bin pkg relationship.
+// This was implemented as a way to help resolve: https://github.com/anchore/syft/issues/931
+func identifyOverlappingOSRelationship(parent *pkg.Package, child *pkg.Package) artifact.ID {
+	if !slices.Contains(osCatalogerTypes, parent.Type) {
+		return ""
+	}
+
+	if slices.Contains(binaryCatalogerTypes, child.Type) {
+		return child.ID()
+	}
+
+	if child.Metadata == nil {
+		return ""
+	}
+
+	if !slices.Contains(binaryMetadataTypes, reflect.TypeOf(child.Metadata).Name()) {
+		return ""
+	}
+
+	return child.ID()
 }

internal/relationship/exclude_binaries_by_file_ownership_overlap_test.go

@@ -3,18 +3,17 @@ package relationship
 import (
 	"testing"
 
+	"github.com/stretchr/testify/assert"
+
 	"github.com/anchore/syft/syft/artifact"
 	"github.com/anchore/syft/syft/pkg"
 )
 
-func TestExclude(t *testing.T) {
+func TestExcludeByFileOwnershipOverlap(t *testing.T) {
 	packageA := pkg.Package{Name: "package-a", Type: pkg.ApkPkg}
-	packageB := pkg.Package{Name: "package-a", Type: pkg.PythonPkg}
-	packageC := pkg.Package{Name: "package-a", Type: pkg.BinaryPkg}
-	packageD := pkg.Package{Name: "package-d", Type: pkg.BinaryPkg}
-	packageE := pkg.Package{Name: "package-e", Type: pkg.RpmPkg, Metadata: pkg.ELFBinaryPackageNoteJSONPayload{Type: "rpm"}}
-	packageF := pkg.Package{Name: "package-f", Type: pkg.RpmPkg, Metadata: pkg.BinarySignature{}}
-	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC, &packageD, &packageE, &packageF} {
+	packageB := pkg.Package{Name: "package-b", Type: pkg.BinaryPkg, Metadata: pkg.JavaVMInstallation{}}
+	packageC := pkg.Package{Name: "package-c", Type: pkg.BinaryPkg, Metadata: pkg.ELFBinaryPackageNoteJSONPayload{Type: "rpm"}}
+	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC} {
 		p := p
 		p.SetID()
 	}
@@ -26,73 +25,152 @@ func TestExclude(t *testing.T) {
 		shouldExclude bool
 	}{
 		{
-			name: "no exclusions from os -> python",
+			// prove that OS -> bin exclusions are wired
+			name: "exclusions from os -> elf binary (as RPM)",
 			relationship: artifact.Relationship{
 				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageB,
-			},
-			packages:      pkg.NewCollection(packageA, packageB),
-			shouldExclude: false,
-		},
-		{
-			name: "exclusions from os -> binary",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageC,
+				From: packageA, // OS
+				To:   packageC, // ELF binary
 			},
 			packages:      pkg.NewCollection(packageA, packageC),
 			shouldExclude: true,
 		},
 		{
-			name: "exclusions from os -> elf binary (as RPM)",
+			// prove that bin -> JVM exclusions are wired
+			name: "exclusions from binary -> binary with JVM metadata",
 			relationship: artifact.Relationship{
 				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageE,
+				From: packageB, // binary with JVM metadata
+				To:   packageC, // binary
 			},
-			packages:      pkg.NewCollection(packageA, packageE),
+			packages:      pkg.NewCollection(packageC, packageB),
 			shouldExclude: true,
 		},
-		{
-			name: "exclusions from os -> binary (masquerading as RPM)",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageF,
-			},
-			packages:      pkg.NewCollection(packageA, packageF),
-			shouldExclude: true,
-		},
-		{
-			name: "no exclusions from python -> binary",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageB,
-				To:   packageC,
-			},
-			packages:      pkg.NewCollection(packageB, packageC),
-			shouldExclude: false,
-		},
-		{
-			name: "no exclusions for different package names",
-			relationship: artifact.Relationship{
-				Type: artifact.OwnershipByFileOverlapRelationship,
-				From: packageA,
-				To:   packageD,
-			},
-			packages:      pkg.NewCollection(packageA, packageD),
-			shouldExclude: false,
-		},
 	}
 
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
-			if !excludeBinaryByFileOwnershipOverlap(test.relationship, test.packages) && test.shouldExclude {
+			actualExclude := excludeByFileOwnershipOverlap(test.relationship, test.packages)
+			didExclude := actualExclude != ""
+			if !didExclude && test.shouldExclude {
 				t.Errorf("expected to exclude relationship %+v", test.relationship)
 			}
 		})
 
 	}
 }
+
+func TestIdentifyOverlappingOSRelationship(t *testing.T) {
+	packageA := pkg.Package{Name: "package-a", Type: pkg.ApkPkg} // OS package
+	packageB := pkg.Package{Name: "package-b", Type: pkg.BinaryPkg}
+	packageC := pkg.Package{Name: "package-c", Type: pkg.BinaryPkg, Metadata: pkg.BinarySignature{}}
+	packageD := pkg.Package{Name: "package-d", Type: pkg.PythonPkg} // Language package
+	packageE := pkg.Package{Name: "package-e", Type: pkg.BinaryPkg, Metadata: pkg.ELFBinaryPackageNoteJSONPayload{}}
+
+	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC, &packageD, &packageE} {
+		p.SetID()
+	}
+
+	tests := []struct {
+		name       string
+		parent     *pkg.Package
+		child      *pkg.Package
+		expectedID artifact.ID
+	}{
+		{
+			name:       "OS -> binary without metadata",
+			parent:     &packageA,
+			child:      &packageB,
+			expectedID: packageB.ID(), // OS package to binary package, should return child ID
+		},
+		{
+			name:       "OS -> binary with binary metadata",
+			parent:     &packageA,
+			child:      &packageC,
+			expectedID: packageC.ID(), // OS package to binary package with binary metadata, should return child ID
+		},
+		{
+			name:       "OS -> non-binary package",
+			parent:     &packageA,
+			child:      &packageD,
+			expectedID: "", // OS package to non-binary package, no exclusion
+		},
+		{
+			name:       "OS -> binary with ELF metadata",
+			parent:     &packageA,
+			child:      &packageE,
+			expectedID: packageE.ID(), // OS package to binary package with ELF metadata, should return child ID
+		},
+		{
+			name:       "non-OS parent",
+			parent:     &packageD, // non-OS package
+			child:      &packageC,
+			expectedID: "", // non-OS parent, no exclusion
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			resultID := identifyOverlappingOSRelationship(tt.parent, tt.child)
+			assert.Equal(t, tt.expectedID, resultID)
+		})
+	}
+}
+
+func TestIdentifyOverlappingJVMRelationship(t *testing.T) {
+
+	packageA := pkg.Package{Name: "package-a", Type: pkg.BinaryPkg}
+	packageB := pkg.Package{Name: "package-b", Type: pkg.BinaryPkg, Metadata: pkg.BinarySignature{}}
+	packageC := pkg.Package{Name: "package-c", Type: pkg.BinaryPkg, Metadata: pkg.JavaVMInstallation{}}
+	packageD := pkg.Package{Name: "package-d", Type: pkg.PythonPkg}
+	packageE := pkg.Package{Name: "package-e", Type: pkg.BinaryPkg}
+
+	for _, p := range []*pkg.Package{&packageA, &packageB, &packageC, &packageD, &packageE} {
+		p.SetID()
+	}
+
+	tests := []struct {
+		name       string
+		parent     *pkg.Package
+		child      *pkg.Package
+		expectedID artifact.ID
+	}{
+		{
+			name:       "binary -> binary with JVM installation",
+			parent:     &packageA,
+			child:      &packageC,
+			expectedID: packageA.ID(), // JVM found, return BinaryPkg ID
+		},
+		{
+			name:       "binary -> binary with binary signature",
+			parent:     &packageA,
+			child:      &packageB,
+			expectedID: "", // binary signatures only found, no exclusion
+		},
+		{
+			name:       "binary -> python (non-binary child)",
+			parent:     &packageA,
+			child:      &packageD,
+			expectedID: "", // non-binary child, no exclusion
+		},
+		{
+			name:       "no JVM or signature in binary -> binary",
+			parent:     &packageA,
+			child:      &packageE,
+			expectedID: "", // no JVM or binary signature, no exclusion
+		},
+		{
+			name:       "non-binary parent",
+			parent:     &packageD,
+			child:      &packageC,
+			expectedID: "", // non-binary parent, no exclusion
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			resultID := identifyOverlappingJVMRelationship(tt.parent, tt.child)
+			assert.Equal(t, tt.expectedID, resultID)
+		})
+	}
+}

internal/relationship/index.go

@@ -17,20 +17,16 @@ type Index struct {
 
 // NewIndex returns a new relationship Index
 func NewIndex(relationships ...artifact.Relationship) *Index {
-	out := Index{}
+	out := Index{
+		fromID: make(map[artifact.ID]*mappedRelationships),
+		toID:   make(map[artifact.ID]*mappedRelationships),
+	}
 	out.Add(relationships...)
 	return &out
 }
 
 // Add adds all the given relationships to the index, without adding duplicates
 func (i *Index) Add(relationships ...artifact.Relationship) {
-	if i.fromID == nil {
-		i.fromID = map[artifact.ID]*mappedRelationships{}
-	}
-	if i.toID == nil {
-		i.toID = map[artifact.ID]*mappedRelationships{}
-	}
-
 	// store appropriate indexes for stable ordering to minimize ID() calls
 	for _, r := range relationships {
 		// prevent duplicates
@@ -68,6 +64,39 @@ func (i *Index) Add(relationships ...artifact.Relationship) {
 	}
 }
 
+func (i *Index) Remove(id artifact.ID) {
+	delete(i.fromID, id)
+	delete(i.toID, id)
+
+	for idx := 0; idx < len(i.all); {
+		if i.all[idx].from == id || i.all[idx].to == id {
+			i.all = append(i.all[:idx], i.all[idx+1:]...)
+		} else {
+			idx++
+		}
+	}
+}
+
+func (i *Index) Replace(ogID artifact.ID, replacement artifact.Identifiable) {
+	for _, mapped := range fromMappedByID(i.fromID, ogID) {
+		i.Add(artifact.Relationship{
+			From: replacement,
+			To:   mapped.relationship.To,
+			Type: mapped.relationship.Type,
+		})
+	}
+
+	for _, mapped := range fromMappedByID(i.toID, ogID) {
+		i.Add(artifact.Relationship{
+			From: mapped.relationship.From,
+			To:   replacement,
+			Type: mapped.relationship.Type,
+		})
+	}
+
+	i.Remove(ogID)
+}
+
 // From returns all relationships from the given identifiable, with specified types
 func (i *Index) From(identifiable artifact.Identifiable, types ...artifact.RelationshipType) []artifact.Relationship {
 	return toSortedSlice(fromMapped(i.fromID, identifiable), types)
@@ -110,10 +139,17 @@ func (i *Index) All(types ...artifact.RelationshipType) []artifact.Relationship
 }
 
 func fromMapped(idMap map[artifact.ID]*mappedRelationships, identifiable artifact.Identifiable) []*sortableRelationship {
-	if identifiable == nil || idMap == nil {
+	if identifiable == nil {
 		return nil
 	}
-	mapped := idMap[identifiable.ID()]
+	return fromMappedByID(idMap, identifiable.ID())
+}
+
+func fromMappedByID(idMap map[artifact.ID]*mappedRelationships, id artifact.ID) []*sortableRelationship {
+	if idMap == nil {
+		return nil
+	}
+	mapped := idMap[id]
 	if mapped == nil {
 		return nil
 	}

internal/relationship/index_test.go

@@ -3,6 +3,7 @@ package relationship
 import (
 	"testing"
 
+	"github.com/stretchr/testify/assert"
 	"github.com/stretchr/testify/require"
 
 	"github.com/anchore/syft/syft/artifact"
@@ -231,3 +232,179 @@ func (i id) ID() artifact.ID {
 func slice[T any](values ...T) []T {
 	return values
 }
+
+func TestRemove(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1"}
+	p2 := pkg.Package{Name: "pkg-2"}
+	p3 := pkg.Package{Name: "pkg-3"}
+	c1 := file.Coordinates{RealPath: "/coords/1"}
+	c2 := file.Coordinates{RealPath: "/coords/2"}
+	c3 := file.Coordinates{RealPath: "/coords/3"}
+	c4 := file.Coordinates{RealPath: "/coords/4"}
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3} {
+		p.SetID()
+	}
+
+	r1 := artifact.Relationship{
+		From: p1,
+		To:   p2,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r2 := artifact.Relationship{
+		From: p1,
+		To:   p3,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r3 := artifact.Relationship{
+		From: p1,
+		To:   c1,
+		Type: artifact.ContainsRelationship,
+	}
+	r4 := artifact.Relationship{
+		From: p2,
+		To:   c2,
+		Type: artifact.ContainsRelationship,
+	}
+	r5 := artifact.Relationship{
+		From: p3,
+		To:   c1,
+		Type: artifact.ContainsRelationship,
+	}
+	r6 := artifact.Relationship{
+		From: p3,
+		To:   c2,
+		Type: artifact.ContainsRelationship,
+	}
+	r7 := artifact.Relationship{
+		From: c1,
+		To:   c3,
+		Type: artifact.ContainsRelationship,
+	}
+	r8 := artifact.Relationship{
+		From: c3,
+		To:   c4,
+		Type: artifact.ContainsRelationship,
+	}
+
+	index := NewIndex(r1, r2, r3, r4, r5, r6, r7, r8)
+
+	assert.Equal(t, 8, len(index.All()))
+
+	// removal of p1 should remove r1, r2, and r3
+	index.Remove(p1.ID())
+	remaining := index.All()
+
+	assert.Equal(t, 5, len(remaining))
+	assert.NotContains(t, remaining, r1)
+	assert.NotContains(t, remaining, r2)
+	assert.NotContains(t, remaining, r3)
+
+	assert.Empty(t, index.From(p1))
+	assert.Empty(t, index.To(p1))
+
+	// removal of c1 should remove r5 and r7
+	index.Remove(c1.ID())
+	remaining = index.All()
+
+	// r8 remains since c3->c4 should still exist
+	assert.Equal(t, 3, len(remaining))
+	assert.NotContains(t, remaining, r5)
+	assert.NotContains(t, remaining, r7)
+	assert.Contains(t, remaining, r8)
+
+	assert.Empty(t, index.From(c1))
+	assert.Empty(t, index.To(c1))
+
+	// removal of c3 should remove r8
+	index.Remove(c3.ID())
+	remaining = index.All()
+
+	assert.Equal(t, 2, len(remaining))
+	assert.Contains(t, remaining, r4)
+	assert.Contains(t, remaining, r6)
+
+	assert.Empty(t, index.From(c3))
+	assert.Empty(t, index.To(c3))
+}
+
+func TestReplace(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1"}
+	p2 := pkg.Package{Name: "pkg-2"}
+	p3 := pkg.Package{Name: "pkg-3"}
+	p4 := pkg.Package{Name: "pkg-4"}
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3, &p4} {
+		p.SetID()
+	}
+
+	r1 := artifact.Relationship{
+		From: p1,
+		To:   p2,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r2 := artifact.Relationship{
+		From: p3,
+		To:   p1,
+		Type: artifact.DependencyOfRelationship,
+	}
+	r3 := artifact.Relationship{
+		From: p2,
+		To:   p3,
+		Type: artifact.ContainsRelationship,
+	}
+
+	index := NewIndex(r1, r2, r3)
+
+	// replace p1 with p4 in the relationships
+	index.Replace(p1.ID(), &p4)
+
+	expectedRels := []artifact.Relationship{
+		{
+			From: p4, // replaced
+			To:   p2,
+			Type: artifact.DependencyOfRelationship,
+		},
+		{
+			From: p3,
+			To:   p4, // replaced
+			Type: artifact.DependencyOfRelationship,
+		},
+		{
+			From: p2,
+			To:   p3,
+			Type: artifact.ContainsRelationship,
+		},
+	}
+
+	compareRelationships(t, expectedRels, index.All())
+}
+
+func compareRelationships(t testing.TB, expected, actual []artifact.Relationship) {
+	assert.Equal(t, len(expected), len(actual), "number of relationships should match")
+	for _, e := range expected {
+		found := false
+		for _, a := range actual {
+			if a.From.ID() == e.From.ID() && a.To.ID() == e.To.ID() && a.Type == e.Type {
+				found = true
+				break
+			}
+		}
+		assert.True(t, found, "expected relationship not found: %+v", e)
+	}
+}
+
+func TestReplace_NoExistingRelations(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1"}
+	p2 := pkg.Package{Name: "pkg-2"}
+
+	p1.SetID()
+	p2.SetID()
+
+	index := NewIndex()
+
+	index.Replace(p1.ID(), &p2)
+
+	allRels := index.All()
+	assert.Len(t, allRels, 0)
+}

internal/spdxlicense/license_list.go

@@ -1,9 +1,9 @@
 // Code generated by go generate; DO NOT EDIT.
-// This file was generated by robots at 2024-05-23 08:47:23.204981 -0400 EDT m=+0.050881068
+// This file was generated by robots at 2024-08-20 11:33:49.349625 -0400 EDT m=+0.383911876
 // using data from https://spdx.org/licenses/licenses.json
 package spdxlicense
 
-const Version = "3.24.0"
+const Version = "3.25.0"
 
 var licenseIDs = map[string]string{
 	"0bsd":                                  "0BSD",
@@ -501,6 +501,8 @@ var licenseIDs = map[string]string{
 	"dldezero2.0":                           "DL-DE-ZERO-2.0",
 	"dldezero2.0.0":                         "DL-DE-ZERO-2.0",
 	"doc":                                   "DOC",
+	"docbookschema":                         "DocBook-Schema",
+	"docbookxml":                            "DocBook-XML",
 	"dotseqn":                               "Dotseqn",
 	"drl1":                                  "DRL-1.0",
 	"drl1.0":                                "DRL-1.0",
@@ -714,6 +716,7 @@ var licenseIDs = map[string]string{
 	"gutmann":                               "Gutmann",
 	"haskellreport":                         "HaskellReport",
 	"hdparm":                                "hdparm",
+	"hidapi":                                "HIDAPI",
 	"hippocratic2":                          "Hippocratic-2.1",
 	"hippocratic2.1":                        "Hippocratic-2.1",
 	"hippocratic2.1.0":                      "Hippocratic-2.1",
@@ -740,6 +743,7 @@ var licenseIDs = map[string]string{
 	"hpndmarkuskuhn":                        "HPND-Markus-Kuhn",
 	"hpndmerchantabilityvariant":            "HPND-merchantability-variant",
 	"hpndmitdisclaimer":                     "HPND-MIT-disclaimer",
+	"hpndnetrek":                            "HPND-Netrek",
 	"hpndpbmplus":                           "HPND-Pbmplus",
 	"hpndsellmitdisclaimerxserver":          "HPND-sell-MIT-disclaimer-xserver",
 	"hpndsellregexpr":                       "HPND-sell-regexpr",
@@ -1165,6 +1169,7 @@ var licenseIDs = map[string]string{
 	"rsamd":                                 "RSA-MD",
 	"rscpl":                                 "RSCPL",
 	"ruby":                                  "Ruby",
+	"rubypty":                               "Ruby-pty",
 	"saxpath":                               "Saxpath",
 	"saxpd":                                 "SAX-PD",
 	"saxpd2":                                "SAX-PD-2.0",
@@ -1265,6 +1270,9 @@ var licenseIDs = map[string]string{
 	"tuberlin2":                             "TU-Berlin-2.0",
 	"tuberlin2.0":                           "TU-Berlin-2.0",
 	"tuberlin2.0.0":                         "TU-Berlin-2.0",
+	"ubuntufont1":                           "Ubuntu-font-1.0",
+	"ubuntufont1.0":                         "Ubuntu-font-1.0",
+	"ubuntufont1.0.0":                       "Ubuntu-font-1.0",
 	"ucar":                                  "UCAR",
 	"ucl1":                                  "UCL-1.0",
 	"ucl1.0":                                "UCL-1.0",
@@ -1315,8 +1323,11 @@ var licenseIDs = map[string]string{
 	"x11.0":                                 "X11",
 	"x11.0.0":                               "X11",
 	"x11.0.0distributemodificationsvariant": "X11-distribute-modifications-variant",
+	"x11.0.0swapped":                        "X11-swapped",
 	"x11.0distributemodificationsvariant":   "X11-distribute-modifications-variant",
+	"x11.0swapped":                          "X11-swapped",
 	"x11distributemodificationsvariant":     "X11-distribute-modifications-variant",
+	"x11swapped":                            "X11-swapped",
 	"xdebug1":                               "Xdebug-1.03",
 	"xdebug1.03":                            "Xdebug-1.03",
 	"xdebug1.03.0":                          "Xdebug-1.03",

internal/task/executor.go

@@ -5,9 +5,11 @@ import (
 	"fmt"
 	"runtime/debug"
 	"sync"
+	"time"
 
 	"github.com/hashicorp/go-multierror"
 
+	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/internal/sbomsync"
 	"github.com/anchore/syft/syft/event/monitor"
 	"github.com/anchore/syft/syft/file"
@@ -68,5 +70,8 @@ func runTaskSafely(ctx context.Context, t Task, resolver file.Resolver, s sbomsy
 		}
 	}()
 
-	return t.Execute(ctx, resolver, s)
+	start := time.Now()
+	res := t.Execute(ctx, resolver, s)
+	log.WithFields("task", t.Name(), "elapsed", time.Since(start)).Info("task completed")
+	return res
 }

internal/task/package_task_factory.go

@@ -11,14 +11,16 @@ import (
 
 	"github.com/anchore/syft/internal/bus"
 	"github.com/anchore/syft/internal/log"
+	"github.com/anchore/syft/internal/relationship"
 	"github.com/anchore/syft/internal/sbomsync"
 	"github.com/anchore/syft/syft/artifact"
 	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/cataloging/pkgcataloging"
+	"github.com/anchore/syft/syft/cpe"
 	"github.com/anchore/syft/syft/event/monitor"
 	"github.com/anchore/syft/syft/file"
 	"github.com/anchore/syft/syft/pkg"
-	"github.com/anchore/syft/syft/pkg/cataloger/common/cpe"
+	cpeutils "github.com/anchore/syft/syft/pkg/cataloger/common/cpe"
 )
 
 type packageTaskFactory func(cfg CatalogingFactoryConfig) Task
@@ -26,6 +28,7 @@ type packageTaskFactory func(cfg CatalogingFactoryConfig) Task
 type PackageTaskFactories []packageTaskFactory
 
 type CatalogingFactoryConfig struct {
+	ComplianceConfig     cataloging.ComplianceConfig
 	SearchConfig         cataloging.SearchConfig
 	RelationshipsConfig  cataloging.RelationshipsConfig
 	DataGenerationConfig cataloging.DataGenerationConfig
@@ -34,6 +37,7 @@ type CatalogingFactoryConfig struct {
 
 func DefaultCatalogingFactoryConfig() CatalogingFactoryConfig {
 	return CatalogingFactoryConfig{
+		ComplianceConfig:     cataloging.DefaultComplianceConfig(),
 		SearchConfig:         cataloging.DefaultSearchConfig(),
 		RelationshipsConfig:  cataloging.DefaultRelationshipsConfig(),
 		DataGenerationConfig: cataloging.DefaultDataGenerationConfig(),
@@ -81,8 +85,6 @@ func (f PackageTaskFactories) Tasks(cfg CatalogingFactoryConfig) ([]Task, error)
 }
 
 // NewPackageTask creates a Task function for a generic pkg.Cataloger, honoring the common configuration options.
-//
-//nolint:funlen
 func NewPackageTask(cfg CatalogingFactoryConfig, c pkg.Cataloger, tags ...string) Task {
 	fn := func(ctx context.Context, resolver file.Resolver, sbom sbomsync.Builder) error {
 		catalogerName := c.Name()
@@ -102,50 +104,21 @@ func NewPackageTask(cfg CatalogingFactoryConfig, c pkg.Cataloger, tags ...string
 
 		pkgs, relationships, err := c.Catalog(ctx, resolver)
 		if err != nil {
-			return fmt.Errorf("unable to catalog packages with %q: %w", c.Name(), err)
+			return fmt.Errorf("unable to catalog packages with %q: %w", catalogerName, err)
 		}
 
-		log.WithFields("cataloger", c.Name()).Debugf("discovered %d packages", len(pkgs))
+		log.WithFields("cataloger", catalogerName).Debugf("discovered %d packages", len(pkgs))
 
-		for i, p := range pkgs {
-			if cfg.DataGenerationConfig.GenerateCPEs {
-				// generate CPEs (note: this is excluded from package ID, so is safe to mutate)
-				// we might have binary classified CPE already with the package so we want to append here
-				dictionaryCPEs, ok := cpe.DictionaryFind(p)
-				if ok {
-					log.Tracef("used CPE dictionary to find CPEs for %s package %q: %s", p.Type, p.Name, dictionaryCPEs)
-					p.CPEs = append(p.CPEs, dictionaryCPEs...)
-				} else {
-					p.CPEs = append(p.CPEs, cpe.Generate(p)...)
-				}
-			}
+		pkgs, relationships = finalizePkgCatalogerResults(cfg, resolver, catalogerName, pkgs, relationships)
 
-			// if we were not able to identify the language we have an opportunity
-			// to try and get this value from the PURL. Worst case we assert that
-			// we could not identify the language at either stage and set UnknownLanguage
-			if p.Language == "" {
-				p.Language = pkg.LanguageFromPURL(p.PURL)
-			}
-
-			if cfg.RelationshipsConfig.PackageFileOwnership {
-				// create file-to-package relationships for files owned by the package
-				owningRelationships, err := packageFileOwnershipRelationships(p, resolver)
-				if err != nil {
-					log.Warnf("unable to create any package-file relationships for package name=%q type=%q: %w", p.Name, p.Type, err)
-				} else {
-					relationships = append(relationships, owningRelationships...)
-				}
-			}
-
-			pkgs[i] = p
-		}
+		pkgs, relationships = applyCompliance(cfg.ComplianceConfig, pkgs, relationships)
 
 		sbom.AddPackages(pkgs...)
 		sbom.AddRelationships(relationships...)
 		t.Add(int64(len(pkgs)))
 
 		t.SetCompleted()
-		log.WithFields("name", c.Name()).Trace("package cataloger completed")
+		log.WithFields("name", catalogerName).Trace("package cataloger completed")
 
 		return nil
 	}
@@ -154,6 +127,145 @@ func NewPackageTask(cfg CatalogingFactoryConfig, c pkg.Cataloger, tags ...string
 	return NewTask(c.Name(), fn, tags...)
 }
 
+func finalizePkgCatalogerResults(cfg CatalogingFactoryConfig, resolver file.PathResolver, catalogerName string, pkgs []pkg.Package, relationships []artifact.Relationship) ([]pkg.Package, []artifact.Relationship) {
+	for i, p := range pkgs {
+		if p.FoundBy == "" {
+			p.FoundBy = catalogerName
+		}
+
+		if cfg.DataGenerationConfig.GenerateCPEs && !hasAuthoritativeCPE(p.CPEs) {
+			// generate CPEs (note: this is excluded from package ID, so is safe to mutate)
+			// we might have binary classified CPE already with the package so we want to append here
+			dictionaryCPEs, ok := cpeutils.DictionaryFind(p)
+			if ok {
+				log.Tracef("used CPE dictionary to find CPEs for %s package %q: %s", p.Type, p.Name, dictionaryCPEs)
+				p.CPEs = append(p.CPEs, dictionaryCPEs...)
+			} else {
+				p.CPEs = append(p.CPEs, cpeutils.Generate(p)...)
+			}
+		}
+
+		// if we were not able to identify the language we have an opportunity
+		// to try and get this value from the PURL. Worst case we assert that
+		// we could not identify the language at either stage and set UnknownLanguage
+		if p.Language == "" {
+			p.Language = pkg.LanguageFromPURL(p.PURL)
+		}
+
+		if cfg.RelationshipsConfig.PackageFileOwnership {
+			// create file-to-package relationships for files owned by the package
+			owningRelationships, err := packageFileOwnershipRelationships(p, resolver)
+			if err != nil {
+				log.Warnf("unable to create any package-file relationships for package name=%q type=%q: %v", p.Name, p.Type, err)
+			} else {
+				relationships = append(relationships, owningRelationships...)
+			}
+		}
+
+		pkgs[i] = p
+	}
+	return pkgs, relationships
+}
+
+type packageReplacement struct {
+	original artifact.ID
+	pkg      pkg.Package
+}
+
+func applyCompliance(cfg cataloging.ComplianceConfig, pkgs []pkg.Package, relationships []artifact.Relationship) ([]pkg.Package, []artifact.Relationship) {
+	remainingPkgs, droppedPkgs, replacements := filterNonCompliantPackages(pkgs, cfg)
+
+	relIdx := relationship.NewIndex(relationships...)
+	for _, p := range droppedPkgs {
+		relIdx.Remove(p.ID())
+	}
+
+	for _, replacement := range replacements {
+		relIdx.Replace(replacement.original, replacement.pkg)
+	}
+
+	return remainingPkgs, relIdx.All()
+}
+
+func filterNonCompliantPackages(pkgs []pkg.Package, cfg cataloging.ComplianceConfig) ([]pkg.Package, []pkg.Package, []packageReplacement) {
+	var remainingPkgs, droppedPkgs []pkg.Package
+	var replacements []packageReplacement
+	for _, p := range pkgs {
+		keep, replacement := applyComplianceRules(&p, cfg)
+		if keep {
+			remainingPkgs = append(remainingPkgs, p)
+		} else {
+			droppedPkgs = append(droppedPkgs, p)
+		}
+		if replacement != nil {
+			replacements = append(replacements, *replacement)
+		}
+	}
+
+	return remainingPkgs, droppedPkgs, replacements
+}
+
+func applyComplianceRules(p *pkg.Package, cfg cataloging.ComplianceConfig) (bool, *packageReplacement) {
+	var drop bool
+	var replacement *packageReplacement
+
+	applyComplianceRule := func(value, fieldName string, action cataloging.ComplianceAction) bool {
+		if strings.TrimSpace(value) != "" {
+			return false
+		}
+
+		loc := "unknown"
+		locs := p.Locations.ToSlice()
+		if len(locs) > 0 {
+			loc = locs[0].Path()
+		}
+		switch action {
+		case cataloging.ComplianceActionDrop:
+			log.WithFields("pkg", p.String(), "location", loc).Debugf("package with missing %s, dropping", fieldName)
+			drop = true
+
+		case cataloging.ComplianceActionStub:
+			log.WithFields("pkg", p.String(), "location", loc).Debugf("package with missing %s, stubbing with default value", fieldName)
+			return true
+
+		case cataloging.ComplianceActionKeep:
+			log.WithFields("pkg", p.String(), "location", loc).Tracef("package with missing %s, taking no action", fieldName)
+		}
+		return false
+	}
+
+	ogID := p.ID()
+
+	if applyComplianceRule(p.Name, "name", cfg.MissingName) {
+		p.Name = cataloging.UnknownStubValue
+		p.SetID()
+	}
+
+	if applyComplianceRule(p.Version, "version", cfg.MissingVersion) {
+		p.Version = cataloging.UnknownStubValue
+		p.SetID()
+	}
+
+	newID := p.ID()
+	if newID != ogID {
+		replacement = &packageReplacement{
+			original: ogID,
+			pkg:      *p,
+		}
+	}
+
+	return !drop, replacement
+}
+
+func hasAuthoritativeCPE(cpes []cpe.CPE) bool {
+	for _, c := range cpes {
+		if c.Source != cpe.GeneratedSource {
+			return true
+		}
+	}
+	return false
+}
+
 func prettyName(s string) string {
 	if s == "" {
 		return ""

internal/task/package_task_factory_test.go

@@ -0,0 +1,140 @@
+package task
+
+import (
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+
+	"github.com/anchore/syft/syft/artifact"
+	"github.com/anchore/syft/syft/cataloging"
+	"github.com/anchore/syft/syft/cpe"
+	"github.com/anchore/syft/syft/file"
+	"github.com/anchore/syft/syft/pkg"
+)
+
+func Test_hasAuthoritativeCPE(t *testing.T) {
+	tests := []struct {
+		name string
+		cpes []cpe.CPE
+		want bool
+	}{
+		{
+			name: "no cpes",
+			cpes: []cpe.CPE{},
+			want: false,
+		},
+		{
+			name: "no authoritative cpes",
+			cpes: []cpe.CPE{
+				{
+					Source: cpe.GeneratedSource,
+				},
+			},
+			want: false,
+		},
+		{
+			name: "has declared (authoritative) cpe",
+			cpes: []cpe.CPE{
+				{
+					Source: cpe.DeclaredSource,
+				},
+			},
+			want: true,
+		},
+		{
+			name: "has lookup (authoritative) cpe",
+			cpes: []cpe.CPE{
+				{
+					Source: cpe.NVDDictionaryLookupSource,
+				},
+			},
+			want: true,
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.Equal(t, tt.want, hasAuthoritativeCPE(tt.cpes))
+		})
+	}
+}
+
+func TestApplyCompliance(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1", Version: "1.0"}
+	p2 := pkg.Package{Name: "", Version: "1.0"}   // missing name
+	p3 := pkg.Package{Name: "pkg-3", Version: ""} // missing version
+	p4 := pkg.Package{Name: "pkg-4", Version: ""} // missing version
+	c1 := file.Coordinates{RealPath: "/coords/1"}
+	c2 := file.Coordinates{RealPath: "/coords/2"}
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3, &p4} {
+		p.SetID()
+	}
+
+	r1 := artifact.Relationship{
+		From: p1,
+		To:   c1,
+		Type: artifact.ContainsRelationship,
+	}
+	r2 := artifact.Relationship{
+		From: p2,
+		To:   c2,
+		Type: artifact.ContainsRelationship,
+	}
+
+	cfg := cataloging.ComplianceConfig{
+		MissingName:    cataloging.ComplianceActionDrop,
+		MissingVersion: cataloging.ComplianceActionStub,
+	}
+
+	remainingPkgs, remainingRels := applyCompliance(cfg, []pkg.Package{p1, p2, p3, p4}, []artifact.Relationship{r1, r2})
+
+	// p2 should be dropped because it has a missing name, p3 and p4 should pass with a warning for the missing version
+	assert.Len(t, remainingPkgs, 3) // p1, p3, p4 should remain
+	assert.Len(t, remainingRels, 1) // only r1 should remain (relationship involving p1)
+}
+
+func TestFilterNonCompliantPackages(t *testing.T) {
+	p1 := pkg.Package{Name: "pkg-1", Version: "1.0"}
+	p2 := pkg.Package{Name: "", Version: "1.0"}   // missing name
+	p3 := pkg.Package{Name: "pkg-3", Version: ""} // missing version
+
+	for _, p := range []*pkg.Package{&p1, &p2, &p3} {
+		p.SetID()
+	}
+
+	cfg := cataloging.ComplianceConfig{
+		MissingName:    cataloging.ComplianceActionDrop,
+		MissingVersion: cataloging.ComplianceActionKeep,
+	}
+
+	remainingPkgs, droppedPkgs, replacement := filterNonCompliantPackages([]pkg.Package{p1, p2, p3}, cfg)
+	require.Nil(t, replacement)
+
+	// p2 should be dropped because it has a missing name
+	assert.Len(t, remainingPkgs, 2)
+	assert.Len(t, droppedPkgs, 1)
+	assert.Equal(t, p2, droppedPkgs[0])
+}
+
+func TestApplyComplianceRules_DropAndStub(t *testing.T) {
+	p := pkg.Package{Name: "", Version: ""}
+	p.SetID()
+	ogID := p.ID()
+
+	cfg := cataloging.ComplianceConfig{
+		MissingName:    cataloging.ComplianceActionDrop,
+		MissingVersion: cataloging.ComplianceActionStub,
+	}
+
+	isCompliant, replacement := applyComplianceRules(&p, cfg)
+	require.NotNil(t, replacement)
+	assert.Equal(t, packageReplacement{
+		original: ogID,
+		pkg:      p,
+	}, *replacement)
+
+	// the package should be dropped due to missing name (drop action) and its version should be stubbed
+	assert.False(t, isCompliant)
+	assert.Equal(t, cataloging.UnknownStubValue, p.Version)
+}

internal/task/package_tasks.go

@@ -21,6 +21,7 @@ import (
 	"github.com/anchore/syft/syft/pkg/cataloger/kernel"
 	"github.com/anchore/syft/syft/pkg/cataloger/lua"
 	"github.com/anchore/syft/syft/pkg/cataloger/nix"
+	"github.com/anchore/syft/syft/pkg/cataloger/ocaml"
 	"github.com/anchore/syft/syft/pkg/cataloger/php"
 	"github.com/anchore/syft/syft/pkg/cataloger/python"
 	"github.com/anchore/syft/syft/pkg/cataloger/r"
@@ -33,6 +34,21 @@ import (
 	"github.com/anchore/syft/syft/pkg/cataloger/wordpress"
 )
 
+const (
+	// Java ecosystem labels
+	Java  = "java"
+	Maven = "maven"
+
+	// Go ecosystem labels
+	Go     = "go"
+	Golang = "golang"
+
+	// JavaScript ecosystem labels
+	JavaScript = "javascript"
+	Node       = "node"
+	NPM        = "npm"
+)
+
 //nolint:funlen
 func DefaultPackageTaskFactories() PackageTaskFactories {
 	return []packageTaskFactory{
@@ -48,7 +64,7 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 
 		// language-specific package installed catalogers ///////////////////////////////////////////////////////////////////////////
 		newSimplePackageTaskFactory(cpp.NewConanInfoCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "cpp", "conan"),
-		newSimplePackageTaskFactory(javascript.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "javascript", "node"),
+		newSimplePackageTaskFactory(javascript.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, JavaScript, Node),
 		newSimplePackageTaskFactory(php.NewComposerInstalledCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "php", "composer"),
 		newSimplePackageTaskFactory(r.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "r"),
 		newSimplePackageTaskFactory(ruby.NewInstalledGemSpecCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "ruby", "gem", "gemspec"),
@@ -66,20 +82,20 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return golang.NewGoModuleFileCataloger(cfg.PackagesConfig.Golang)
 			},
-			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "go", "golang", "gomod",
+			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, Go, Golang, "gomod",
 		),
-		newSimplePackageTaskFactory(java.NewGradleLockfileCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "java", "gradle"),
+		newSimplePackageTaskFactory(java.NewGradleLockfileCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, Java, "gradle"),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return java.NewPomCataloger(cfg.PackagesConfig.JavaArchive)
 			},
-			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "java", "maven",
+			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, Java, Maven,
 		),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return javascript.NewLockCataloger(cfg.PackagesConfig.JavaScript)
 			},
-			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "javascript", "node", "npm",
+			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, JavaScript, Node, NPM,
 		),
 		newSimplePackageTaskFactory(php.NewComposerLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "php", "composer"),
 		newSimplePackageTaskFactory(php.NewPeclCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, pkgcataloging.ImageTag, "php", "pecl"),
@@ -95,6 +111,7 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 		newSimplePackageTaskFactory(swift.NewCocoapodsCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "swift", "cocoapods"),
 		newSimplePackageTaskFactory(swift.NewSwiftPackageManagerCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "swift", "spm"),
 		newSimplePackageTaskFactory(swipl.NewSwiplPackCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "swipl", "pack"),
+		newSimplePackageTaskFactory(ocaml.NewOpamPackageManagerCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "ocaml", "opam"),
 
 		// language-specific package for both image and directory scans (but not necessarily declared) ////////////////////////////////////////
 		newSimplePackageTaskFactory(dotnet.NewDotnetPortableExecutableCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "dotnet", "c#", "binary"),
@@ -103,15 +120,15 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return golang.NewGoModuleBinaryCataloger(cfg.PackagesConfig.Golang)
 			},
-			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "go", "golang", "gomod", "binary",
+			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Go, Golang, "gomod", "binary",
 		),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return java.NewArchiveCataloger(cfg.PackagesConfig.JavaArchive)
 			},
-			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "java", "maven",
+			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Java, Maven,
 		),
-		newSimplePackageTaskFactory(java.NewNativeImageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "java"),
+		newSimplePackageTaskFactory(java.NewNativeImageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Java),
 		newSimplePackageTaskFactory(nix.NewStoreCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "nix"),
 		newSimplePackageTaskFactory(lua.NewPackageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "lua"),
 
@@ -125,6 +142,7 @@ func DefaultPackageTaskFactories() PackageTaskFactories {
 		newSimplePackageTaskFactory(binary.NewELFPackageCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, "binary", "elf-package"),
 		newSimplePackageTaskFactory(githubactions.NewActionUsageCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, "github", "github-actions"),
 		newSimplePackageTaskFactory(githubactions.NewWorkflowUsageCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, "github", "github-actions"),
+		newSimplePackageTaskFactory(java.NewJvmDistributionCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, "java", "jvm", "jdk", "jre"),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return kernel.NewLinuxKernelCataloger(cfg.PackagesConfig.LinuxKernel)

schema/json/schema-latest.json

@@ -1,6 +1,6 @@
 {
   "$schema": "https://json-schema.org/draft/2020-12/schema",
-  "$id": "anchore.io/schema/syft/json/16.0.15/document",
+  "$id": "anchore.io/schema/syft/json/16.0.17/document",
   "$ref": "#/$defs/Document",
   "$defs": {
     "AlpmDbEntry": {
@@ -955,6 +955,24 @@
         "virtualPath"
       ]
     },
+    "JavaJvmInstallation": {
+      "properties": {
+        "release": {
+          "$ref": "#/$defs/JavaVMRelease"
+        },
+        "files": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object",
+      "required": [
+        "release",
+        "files"
+      ]
+    },
     "JavaManifest": {
       "properties": {
         "main": {
@@ -1062,6 +1080,77 @@
         "version"
       ]
     },
+    "JavaVMRelease": {
+      "properties": {
+        "implementor": {
+          "type": "string"
+        },
+        "implementorVersion": {
+          "type": "string"
+        },
+        "javaRuntimeVersion": {
+          "type": "string"
+        },
+        "javaVersion": {
+          "type": "string"
+        },
+        "javaVersionDate": {
+          "type": "string"
+        },
+        "libc": {
+          "type": "string"
+        },
+        "modules": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "osArch": {
+          "type": "string"
+        },
+        "osName": {
+          "type": "string"
+        },
+        "osVersion": {
+          "type": "string"
+        },
+        "source": {
+          "type": "string"
+        },
+        "buildSource": {
+          "type": "string"
+        },
+        "buildSourceRepo": {
+          "type": "string"
+        },
+        "sourceRepo": {
+          "type": "string"
+        },
+        "fullVersion": {
+          "type": "string"
+        },
+        "semanticVersion": {
+          "type": "string"
+        },
+        "buildInfo": {
+          "type": "string"
+        },
+        "jvmVariant": {
+          "type": "string"
+        },
+        "jvmVersion": {
+          "type": "string"
+        },
+        "imageType": {
+          "type": "string"
+        },
+        "buildType": {
+          "type": "string"
+        }
+      },
+      "type": "object"
+    },
     "JavascriptNpmPackage": {
       "properties": {
         "name": {
@@ -1436,6 +1525,50 @@
         "files"
       ]
     },
+    "OpamPackage": {
+      "properties": {
+        "name": {
+          "type": "string"
+        },
+        "version": {
+          "type": "string"
+        },
+        "licenses": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "url": {
+          "type": "string"
+        },
+        "checksum": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "homepage": {
+          "type": "string"
+        },
+        "dependencies": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object",
+      "required": [
+        "name",
+        "version",
+        "licenses",
+        "url",
+        "checksum",
+        "homepage",
+        "dependencies"
+      ]
+    },
     "Package": {
       "properties": {
         "id": {
@@ -1539,6 +1672,9 @@
             {
               "$ref": "#/$defs/JavaArchive"
             },
+            {
+              "$ref": "#/$defs/JavaJvmInstallation"
+            },
             {
               "$ref": "#/$defs/JavascriptNpmPackage"
             },
@@ -1563,6 +1699,9 @@
             {
               "$ref": "#/$defs/NixStoreEntry"
             },
+            {
+              "$ref": "#/$defs/OpamPackage"
+            },
             {
               "$ref": "#/$defs/PhpComposerInstalledEntry"
             },

syft/cataloging/compliance.go

@@ -0,0 +1,47 @@
+package cataloging
+
+import (
+	"strings"
+)
+
+const (
+	ComplianceActionKeep ComplianceAction = "keep"
+	ComplianceActionDrop ComplianceAction = "drop"
+	ComplianceActionStub ComplianceAction = "stub"
+)
+
+const UnknownStubValue = "UNKNOWN"
+
+type ComplianceAction string
+
+type ComplianceConfig struct {
+	MissingName    ComplianceAction `yaml:"missing-name" json:"missing-name" mapstructure:"missing-name"`
+	MissingVersion ComplianceAction `yaml:"missing-version" json:"missing-version" mapstructure:"missing-version"`
+}
+
+func DefaultComplianceConfig() ComplianceConfig {
+	// Note: name and version are required minimum SBOM elements by NTIA, thus should be the API default
+	return ComplianceConfig{
+		MissingName:    ComplianceActionDrop,
+		MissingVersion: ComplianceActionStub,
+	}
+}
+
+func (c ComplianceConfig) Parse() ComplianceConfig {
+	return ComplianceConfig{
+		MissingName:    c.MissingName.Parse(),
+		MissingVersion: c.MissingVersion.Parse(),
+	}
+}
+
+func (c ComplianceAction) Parse() ComplianceAction {
+	switch strings.ToLower(string(c)) {
+	case string(ComplianceActionKeep), "include":
+		return ComplianceActionKeep
+	case string(ComplianceActionDrop), "exclude":
+		return ComplianceActionDrop
+	case string(ComplianceActionStub), "replace":
+		return ComplianceActionStub
+	}
+	return ComplianceActionKeep
+}

syft/create_sbom_config.go

@@ -19,6 +19,7 @@ import (
 // CreateSBOMConfig specifies all parameters needed for creating an SBOM.
 type CreateSBOMConfig struct {
 	// required configuration input to specify how cataloging should be performed
+	Compliance         cataloging.ComplianceConfig
 	Search             cataloging.SearchConfig
 	Relationships      cataloging.RelationshipsConfig
 	DataGeneration     cataloging.DataGenerationConfig
@@ -38,6 +39,7 @@ type CreateSBOMConfig struct {
 
 func DefaultCreateSBOMConfig() *CreateSBOMConfig {
 	return &CreateSBOMConfig{
+		Compliance:           cataloging.DefaultComplianceConfig(),
 		Search:               cataloging.DefaultSearchConfig(),
 		Relationships:        cataloging.DefaultRelationshipsConfig(),
 		DataGeneration:       cataloging.DefaultDataGenerationConfig(),
@@ -93,6 +95,12 @@ func (c *CreateSBOMConfig) WithParallelism(p int) *CreateSBOMConfig {
 	return c
 }
 
+// WithComplianceConfig allows for setting the specific compliance configuration for cataloging.
+func (c *CreateSBOMConfig) WithComplianceConfig(cfg cataloging.ComplianceConfig) *CreateSBOMConfig {
+	c.Compliance = cfg
+	return c
+}
+
 // WithSearchConfig allows for setting the specific search configuration for cataloging.
 func (c *CreateSBOMConfig) WithSearchConfig(cfg cataloging.SearchConfig) *CreateSBOMConfig {
 	c.Search = cfg
@@ -225,6 +233,7 @@ func (c *CreateSBOMConfig) packageTasks(src source.Description) ([]task.Task, *t
 		RelationshipsConfig:  c.Relationships,
 		DataGenerationConfig: c.DataGeneration,
 		PackagesConfig:       c.Packages,
+		ComplianceConfig:     c.Compliance,
 	}
 
 	persistentTasks, selectableTasks, err := c.allPackageTasks(cfg)

syft/file/cataloger/executable/test-fixtures/Makefile

@@ -0,0 +1,15 @@
+.DEFAULT_GOAL := default
+
+default:
+	@for dir in $(shell find . -mindepth 1 -maxdepth 1 -type d); do \
+		if [ -f "$$dir/Makefile" ]; then \
+			$(MAKE) -C $$dir; \
+		fi; \
+	done
+
+%:
+	@for dir in $(shell find . -mindepth 1 -maxdepth 1 -type d); do \
+		if [ -f "$$dir/Makefile" ]; then \
+			$(MAKE) -C $$dir $@; \
+		fi; \
+	done

syft/file/cataloger/executable/test-fixtures/elf/Makefile

@@ -1,8 +1,19 @@
 BIN=./bin
 TOOL_IMAGE=localhost/syft-bin-build-tools:latest
 VERIFY_FILE=actual_verify
+FINGERPRINT_FILE=$(BIN).fingerprint
 
-all: build verify
+ifndef BIN
+    $(error BIN is not set)
+endif
+
+.DEFAULT_GOAL := fixtures
+
+# requirement 1: 'fixtures' goal to generate any and all test fixtures
+fixtures: build verify
+
+# requirement 2: 'fingerprint' goal to determine if the fixture input that indicates any existing cache should be busted
+fingerprint: $(FINGERPRINT_FILE)
 
 tools-check:
 	@sha256sum -c Dockerfile.sha256 || (echo "Tools Dockerfile has changed" && exit 1)
@@ -25,10 +36,14 @@ verify: tools
 debug:
 	docker run -i --rm -v $(shell pwd):/mount -w /mount/project $(TOOL_IMAGE) bash
 
-cache.fingerprint:
-	@find project Dockerfile Makefile -type f -exec md5sum {} + | awk '{print $1}' | sort | tee cache.fingerprint
+# requirement 3: we always need to recalculate the fingerprint based on source regardless of any existing fingerprint
+.PHONY: $(FINGERPRINT_FILE)
+$(FINGERPRINT_FILE):
+	@find project Dockerfile Makefile -type f -exec sha256sum {} \; | sort -k2 > $(FINGERPRINT_FILE)
+	@#cat $(FINGERPRINT_FILE) | sha256sum | awk '{print $$1}'
 
+# requirement 4: 'clean' goal to remove all generated test fixtures
 clean:
-	rm -f $(BIN)/*
+	rm -rf $(BIN) Dockerfile.sha256 $(VERIFY_FILE) $(FINGERPRINT_FILE)
 
-.PHONY: build verify debug build-image build-bins clean dockerfile-check cache.fingerprint
+.PHONY: tools tools-check build verify debug clean

syft/file/cataloger/executable/test-fixtures/shared-info/Makefile

@@ -1,8 +1,20 @@
 BIN=./bin
 TOOL_IMAGE=localhost/syft-shared-info-build-tools:latest
 VERIFY_FILE=actual_verify
+FINGERPRINT_FILE=$(BIN).fingerprint
+
+ifndef BIN
+    $(error BIN is not set)
+endif
+
+.DEFAULT_GOAL := fixtures
+
+# requirement 1: 'fixtures' goal to generate any and all test fixtures
+fixtures: build
+
+# requirement 2: 'fingerprint' goal to determine if the fixture input that indicates any existing cache should be busted
+fingerprint: $(FINGERPRINT_FILE)
 
-all: build
 tools-check:
 	@sha256sum -c Dockerfile.sha256 || (echo "Tools Dockerfile has changed" && exit 1)
 
@@ -10,16 +22,20 @@ tools:
 	@(docker inspect $(TOOL_IMAGE) > /dev/null && make tools-check) || (docker build -t $(TOOL_IMAGE) . && sha256sum Dockerfile > Dockerfile.sha256)
 
 build: tools
-	mkdir -p $(BIN)
+	@mkdir -p $(BIN)
 	docker run --platform linux/amd64 -i -v $(shell pwd):/mount -w /mount/project $(TOOL_IMAGE) make
 
 debug:
 	docker run --platform linux/amd64 -i --rm -v $(shell pwd):/mount -w /mount/project $(TOOL_IMAGE) bash
 
-cache.fingerprint:
-	@find project Dockerfile Makefile -type f -exec md5sum {} + | awk '{print $1}' | sort | tee cache.fingerprint
+# requirement 3: we always need to recalculate the fingerprint based on source regardless of any existing fingerprint
+.PHONY: $(FINGERPRINT_FILE)
+$(FINGERPRINT_FILE):
+	@find project Dockerfile Makefile -type f -exec sha256sum {} \; | sort -k2 > $(FINGERPRINT_FILE)
+	@#cat $(FINGERPRINT_FILE) | sha256sum | awk '{print $$1}'
 
+# requirement 4: 'clean' goal to remove all generated test fixtures
 clean:
-	rm -f $(BIN)/*
+	rm -rf $(BIN) Dockerfile.sha256 $(VERIFY_FILE) $(FINGERPRINT_FILE)
 
-.PHONY: build verify debug build-image build-bins clean dockerfile-check cache.fingerprint
+.PHONY: tools tools-check build debug clean

syft/format/common/cyclonedxhelpers/to_format_model.go

@@ -211,6 +211,12 @@ func toBomProperties(srcMetadata source.Description) *[]cyclonedx.Property {
 	metadata, ok := srcMetadata.Metadata.(source.ImageMetadata)
 	if ok {
 		props := helpers.EncodeProperties(metadata.Labels, "syft:image:labels")
+		// return nil if props is nil to avoid creating a pointer to a nil slice,
+		// which results in a null JSON value that does not comply with the CycloneDX schema.
+		// https://github.com/anchore/grype/issues/1759
+		if props == nil {
+			return nil
+		}
 		return &props
 	}
 	return nil

syft/format/common/cyclonedxhelpers/to_format_model_test.go

@@ -236,6 +236,53 @@ func Test_toBomDescriptor(t *testing.T) {
 	}
 }
 
+func Test_toBomProperties(t *testing.T) {
+	tests := []struct {
+		name        string
+		srcMetadata source.Description
+		props       *[]cyclonedx.Property
+	}{
+		{
+			name: "ImageMetadata without labels",
+			srcMetadata: source.Description{
+				Metadata: source.ImageMetadata{
+					Labels: map[string]string{},
+				},
+			},
+			props: nil,
+		},
+		{
+			name: "ImageMetadata with labels",
+			srcMetadata: source.Description{
+				Metadata: source.ImageMetadata{
+					Labels: map[string]string{
+						"label1": "value1",
+						"label2": "value2",
+					},
+				},
+			},
+			props: &[]cyclonedx.Property{
+				{Name: "syft:image:labels:label1", Value: "value1"},
+				{Name: "syft:image:labels:label2", Value: "value2"},
+			},
+		},
+		{
+			name: "not ImageMetadata",
+			srcMetadata: source.Description{
+				Metadata: source.FileMetadata{},
+			},
+			props: nil,
+		},
+	}
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			t.Parallel()
+			props := toBomProperties(test.srcMetadata)
+			require.Equal(t, test.props, props)
+		})
+	}
+}
+
 func Test_toOsComponent(t *testing.T) {
 	tests := []struct {
 		name     string

syft/format/common/spdxhelpers/to_format_model.go

@@ -505,6 +505,14 @@ func toPackageChecksums(p pkg.Package) ([]spdx.Checksum, bool) {
 			Algorithm: spdx.ChecksumAlgorithm(algo),
 			Value:     hexStr,
 		})
+	case pkg.OpamPackage:
+		for _, checksum := range meta.Checksums {
+			parts := strings.Split(checksum, "=")
+			checksums = append(checksums, spdx.Checksum{
+				Algorithm: spdx.ChecksumAlgorithm(strings.ToUpper(parts[0])),
+				Value:     parts[1],
+			})
+		}
 	}
 	return checksums, filesAnalyzed
 }

syft/format/common/spdxhelpers/to_format_model_test.go

@@ -335,6 +335,31 @@ func Test_toPackageChecksums(t *testing.T) {
 			},
 			filesAnalyzed: false,
 		},
+		{
+			name: "Opam Package",
+			pkg: pkg.Package{
+				Name:     "test",
+				Version:  "1.0.0",
+				Language: pkg.Go,
+				Metadata: pkg.OpamPackage{
+					Checksums: []string{
+						"sha256=f5f1c0b4ad2e0dfa6f79eaaaa3586411925c16f61702208ddd4bad2fc17dc47c",
+						"sha512=05a359dc8400d4ca200ff255dbd030acd33d2c4acb5020838f772c02cdb5f243f3dbafbc43a8cd51e6b5923a140f84c9e7ea25b2c0fa277bb68b996190d36e3b",
+					},
+				},
+			},
+			expected: []spdx.Checksum{
+				{
+					Algorithm: "SHA256",
+					Value:     "f5f1c0b4ad2e0dfa6f79eaaaa3586411925c16f61702208ddd4bad2fc17dc47c",
+				},
+				{
+					Algorithm: "SHA512",
+					Value:     "05a359dc8400d4ca200ff255dbd030acd33d2c4acb5020838f772c02cdb5f243f3dbafbc43a8cd51e6b5923a140f84c9e7ea25b2c0fa277bb68b996190d36e3b",
+				},
+			},
+			filesAnalyzed: false,
+		},
 		{
 			name: "Package with no metadata type",
 			pkg: pkg.Package{

syft/format/internal/cyclonedxutil/helpers/component.go

@@ -124,7 +124,7 @@ func decodePackageMetadata(vals map[string]string, c *cyclonedx.Component, typeN
 		if metadataType == nil {
 			return nil
 		}
-		metaPtrTyp := reflect.PtrTo(metadataType)
+		metaPtrTyp := reflect.PointerTo(metadataType)
 		metaPtr := Decode(metaPtrTyp, vals, "syft:metadata", CycloneDXFields)
 
 		// Map all explicit metadata properties

syft/format/internal/cyclonedxutil/helpers/decoder.go

@@ -39,12 +39,23 @@ func ToSyftModel(bom *cyclonedx.BOM) (*sbom.SBOM, error) {
 }
 
 func collectBomPackages(bom *cyclonedx.BOM, s *sbom.SBOM, idMap map[string]interface{}) error {
-	if bom.Components == nil {
+	componentsPresent := false
+	if bom.Components != nil {
+		for i := range *bom.Components {
+			collectPackages(&(*bom.Components)[i], s, idMap)
+		}
+		componentsPresent = true
+	}
+
+	if bom.Metadata != nil && bom.Metadata.Component != nil {
+		collectPackages(bom.Metadata.Component, s, idMap)
+		componentsPresent = true
+	}
+
+	if !componentsPresent {
 		return fmt.Errorf("no components are defined in the CycloneDX BOM")
 	}
-	for i := range *bom.Components {
-		collectPackages(&(*bom.Components)[i], s, idMap)
-	}
+
 	return nil
 }
 

syft/format/internal/cyclonedxutil/helpers/licenses.go

@@ -54,17 +54,14 @@ func decodeLicenses(c *cyclonedx.Component) []pkg.License {
 	}
 
 	for _, l := range *c.Licenses {
-		if l.License == nil {
-			continue
-		}
 		// these fields are mutually exclusive in the spec
 		switch {
-		case l.License.ID != "":
+		case l.License != nil && l.License.ID != "":
 			licenses = append(licenses, pkg.NewLicenseFromURLs(l.License.ID, l.License.URL))
-		case l.License.Name != "":
+		case l.License != nil && l.License.Name != "":
 			licenses = append(licenses, pkg.NewLicenseFromURLs(l.License.Name, l.License.URL))
 		case l.Expression != "":
-			licenses = append(licenses, pkg.NewLicenseFromURLs(l.Expression, l.License.URL))
+			licenses = append(licenses, pkg.NewLicense(l.Expression))
 		default:
 		}
 	}
@@ -72,7 +69,6 @@ func decodeLicenses(c *cyclonedx.Component) []pkg.License {
 	return licenses
 }
 
-// nolint:funlen
 func separateLicenses(p pkg.Package) (spdx, other cyclonedx.Licenses, expressions []string) {
 	ex := make([]string, 0)
 	spdxc := cyclonedx.Licenses{}

syft/format/internal/cyclonedxutil/helpers/licenses_test.go

@@ -254,7 +254,8 @@ func TestDecodeLicenses(t *testing.T) {
 			input: &cyclonedx.Component{
 				Licenses: &cyclonedx.Licenses{
 					{
-						License:    &cyclonedx.License{},
+						// CycloneDX specification doesn't allow to provide License if Expression is provided
+						License:    nil,
 						Expression: "MIT AND GPL-3.0-only WITH Classpath-exception-2.0",
 					},
 				},
@@ -264,7 +265,6 @@ func TestDecodeLicenses(t *testing.T) {
 					Value:          "MIT AND GPL-3.0-only WITH Classpath-exception-2.0",
 					SPDXExpression: "MIT AND GPL-3.0-only WITH Classpath-exception-2.0",
 					Type:           license.Declared,
-					URLs:           []string{},
 				},
 			},
 		},

syft/format/internal/cyclonedxutil/helpers/property_encoder.go

@@ -165,7 +165,7 @@ func Decode(typ reflect.Type, values map[string]string, prefix string, fn FieldN
 
 	isSlice := false
 	if typ.Kind() == reflect.Slice {
-		typ = reflect.PtrTo(typ)
+		typ = reflect.PointerTo(typ)
 		isSlice = true
 	}
 

syft/format/internal/spdxutil/helpers/download_location.go

@@ -26,6 +26,8 @@ func DownloadLocation(p pkg.Package) string {
 			return NoneIfEmpty(metadata.Dist.URL)
 		case pkg.PhpComposerInstalledEntry:
 			return NoneIfEmpty(metadata.Dist.URL)
+		case pkg.OpamPackage:
+			return NoneIfEmpty(metadata.URL)
 		}
 	}
 	return NOASSERTION

syft/format/internal/spdxutil/helpers/originator_supplier.go

@@ -34,7 +34,7 @@ const (
 //
 // Available options are: <omit>, NOASSERTION, Person: <person>, Organization: <org>
 // return values are: <type>, <value>
-func Originator(p pkg.Package) (typ string, author string) { // nolint: funlen
+func Originator(p pkg.Package) (typ string, author string) { //nolint: funlen
 	if !hasMetadata(p) {
 		return typ, author
 	}
@@ -62,6 +62,10 @@ func Originator(p pkg.Package) (typ string, author string) { // nolint: funlen
 			}
 		}
 
+	case pkg.JavaVMInstallation:
+		typ = orgType
+		author = metadata.Release.Implementor
+
 	case pkg.LinuxKernelModule:
 		author = metadata.Author
 

syft/format/internal/spdxutil/helpers/originator_supplier_test.go

@@ -41,6 +41,7 @@ func Test_OriginatorSupplier(t *testing.T) {
 		pkg.RustCargoLockEntry{},
 		pkg.SwiftPackageManagerResolvedEntry{},
 		pkg.SwiplPackEntry{},
+		pkg.OpamPackage{},
 		pkg.YarnLockEntry{},
 	)
 	tests := []struct {
@@ -177,6 +178,18 @@ func Test_OriginatorSupplier(t *testing.T) {
 			},
 			// note: empty!
 		},
+		{
+			name: "from java -- jvm installation",
+			input: pkg.Package{
+				Metadata: pkg.JavaVMInstallation{
+					Release: pkg.JavaVMRelease{
+						Implementor: "Oracle",
+					},
+				},
+			},
+			originator: "Organization: Oracle",
+			supplier:   "Organization: Oracle",
+		},
 		{
 			name: "from linux kernel module",
 			input: pkg.Package{
@@ -350,6 +363,14 @@ func Test_OriginatorSupplier(t *testing.T) {
 			originator: "Person: auth (auth@auth.gov)",
 			supplier:   "Person: me (me@auth.com)",
 		},
+		{
+			name: "from ocaml opam",
+			input: pkg.Package{
+				Metadata: pkg.OpamPackage{},
+			},
+			originator: "",
+			supplier:   "",
+		},
 	}
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {

syft/format/internal/spdxutil/helpers/source_info.go

@@ -64,6 +64,8 @@ func SourceInfo(p pkg.Package) string {
 		answer = "acquired package info from resolved Swift package manifest"
 	case pkg.SwiplPackPkg:
 		answer = "acquired package info from SWI Prolo pack package file"
+	case pkg.OpamPkg:
+		answer = "acquired package info from OCaml opam package file"
 	case pkg.GithubActionPkg, pkg.GithubActionWorkflowPkg:
 		answer = "acquired package info from GitHub Actions workflow file or composite action file"
 	case pkg.WordpressPluginPkg:

syft/format/internal/spdxutil/helpers/source_info_test.go

@@ -271,6 +271,14 @@ func Test_SourceInfo(t *testing.T) {
 				"acquired package info from SWI Prolo pack package file",
 			},
 		},
+		{
+			input: pkg.Package{
+				Type: pkg.OpamPkg,
+			},
+			expected: []string{
+				"acquired package info from OCaml opam package file",
+			},
+		},
 		{
 			input: pkg.Package{
 				Type: pkg.GithubActionPkg,

syft/format/text/test-fixtures/image-simple/Dockerfile

@@ -1,4 +0,0 @@
-# Note: changes to this file will result in updating several test values. Consider making a new image fixture instead of editing this one.
-FROM scratch
-ADD file-1.txt /somefile-1.txt
-ADD file-2.txt /somefile-2.txt

syft/format/text/test-fixtures/image-simple/file-1.txt

@@ -1 +0,0 @@
-this file has contents

syft/format/text/test-fixtures/image-simple/file-2.txt

@@ -1 +0,0 @@
-file-2 contents!

syft/format/text/test-fixtures/snapshot/TestTextImageEncoder.golden

@@ -1,11 +1,11 @@
 [Image]
  Layer:		 0
- Digest:	 sha256:fb6beecb75b39f4bb813dbf177e501edd5ddb3e69bb45cedeb78c676ee1b7a59
+ Digest:	 sha256:100d5a55f9032faead28b7427fa3e650e4f0158f86ea89d06e1489df00cb8c6f
  Size:		 22
  MediaType:	 application/vnd.docker.image.rootfs.diff.tar.gzip
 
  Layer:		 1
- Digest:	 sha256:319b588ce64253a87b533c8ed01cf0025e0eac98e7b516e12532957e1244fdec
+ Digest:	 sha256:000fb9200890d3a19138478b20023023c0dce1c54352007c2863716780f049eb
  Size:		 16
  MediaType:	 application/vnd.docker.image.rootfs.diff.tar.gzip