persist artifact ID as supplemental package data

Signed-off-by: Alex Goodman <wagoodman@users.noreply.github.com>

.binny.yaml

@@ -2,7 +2,7 @@ tools:
   # we want to use a pinned version of binny to manage the toolchain (so binny manages itself!)
   - name: binny
     version:
-      want: v0.8.0
+      want: v0.9.0
     method: github-release
     with:
       repo: anchore/binny
@@ -26,7 +26,7 @@ tools:
   # used for linting
   - name: golangci-lint
     version:
-      want: v1.64.5
+      want: v2.1.6
     method: github-release
     with:
       repo: golangci/golangci-lint
@@ -34,7 +34,7 @@ tools:
   # used for showing the changelog at release
   - name: glow
     version:
-      want: v2.0.0
+      want: v2.1.0
     method: github-release
     with:
       repo: charmbracelet/glow
@@ -42,7 +42,7 @@ tools:
   # used for signing the checksums file at release
   - name: cosign
     version:
-      want: v2.4.3
+      want: v2.5.0
     method: github-release
     with:
       repo: sigstore/cosign
@@ -58,7 +58,7 @@ tools:
   # used to release all artifacts
   - name: goreleaser
     version:
-      want: v2.7.0
+      want: v2.9.0
     method: github-release
     with:
       repo: goreleaser/goreleaser
@@ -103,7 +103,7 @@ tools:
   # used for running all local and CI tasks
   - name: task
     version:
-      want: v3.41.0
+      want: v3.43.3
     method: github-release
     with:
       repo: go-task/task
@@ -111,7 +111,7 @@ tools:
   # used for triggering a release
   - name: gh
     version:
-      want: v2.67.0
+      want: v2.72.0
     method: github-release
     with:
       repo: cli/cli
@@ -119,7 +119,7 @@ tools:
   # used to upload test fixture cache
   - name: oras
     version:
-      want: v1.2.2
+      want: v1.2.3
     method: github-release
     with:
       repo: oras-project/oras
@@ -127,7 +127,7 @@ tools:
   # used to upload test fixture cache
   - name: yq
     version:
-      want: v4.45.1
+      want: v4.45.2
     method: github-release
     with:
       repo: mikefarah/yq

.github/actions/bootstrap/action.yaml

@@ -5,7 +5,7 @@ inputs:
   go-version:
     description: "Go version to install"
     required: true
-    default: "1.24.x"
+    default: ">= 1.24"
   go-dependencies:
     description: "Download go dependencies"
     required: true
@@ -29,7 +29,7 @@ runs:
   using: "composite"
   steps:
     # note: go mod and build is automatically cached on default with v4+
-    - uses: actions/setup-go@f111f3307d8850f501ac008e886eec1fd1932a34 # v5.3.0
+    - uses: actions/setup-go@0aaccfd150d50ccaeb58ebd88d36e91967a5f35b # v5.4.0
       if: inputs.go-version != ''
       with:
         go-version: ${{ inputs.go-version }}
@@ -37,7 +37,7 @@ runs:
     - name: Restore tool cache
       if: inputs.tools == 'true'
       id: tool-cache
-      uses: actions/cache@0c907a75c2c80ebcb7f088228285e798b750cf8f # v4.2.1
+      uses: actions/cache@5a3ec84eff668545956fd18022155c47e93e2684 # v4.2.3
       with:
         path: ${{ github.workspace }}/.tool
         key: ${{ inputs.cache-key-prefix }}-${{ runner.os }}-tool-${{ hashFiles('.binny.yaml') }}
@@ -60,7 +60,7 @@ runs:
 
     - name: Restore ORAS cache from github actions
       if: inputs.download-test-fixture-cache == 'true'
-      uses: actions/cache@0c907a75c2c80ebcb7f088228285e798b750cf8f # v4.2.1
+      uses: actions/cache@5a3ec84eff668545956fd18022155c47e93e2684 # v4.2.3
       with:
         path: ${{ github.workspace }}/.tmp/oras-cache
         key: ${{ inputs.cache-key-prefix }}-oras-cache

.github/scripts/find_cache_paths.py

@@ -86,8 +86,10 @@ def main(file_path: str | None):
         show("The following paths are missing or have no content, but have corresponding .fingerprint files:")
         for path in sorted(missing_content):
             show(f"- {path}")
-        show("Please ensure these paths exist and have content if they are directories.")
-        exit(1)
+        # when adding new cache directories there is a time where it is not possible to have this directory without
+        # running the tests first... but this step is a prerequisite for running the tests. We should not block on this.
+        # show("Please ensure these paths exist and have content if they are directories.")
+        # exit(1)
 
     sha256_hash = calculate_sha256(fingerprint_contents)
 

.github/workflows/benchmark-testing.yaml

@@ -23,7 +23,7 @@ jobs:
         uses: ./.github/actions/bootstrap
 
       - name: Restore base benchmark result
-        uses: actions/cache@0c907a75c2c80ebcb7f088228285e798b750cf8f #v4.2.1
+        uses: actions/cache@5a3ec84eff668545956fd18022155c47e93e2684 #v4.2.3
         with:
           path: test/results/benchmark-main.txt
           # use base sha for PR or new commit hash for main push in benchmark result key
@@ -39,13 +39,13 @@ jobs:
           OUTPUT="${OUTPUT//$'\r'/'%0D'}" # URL encode all '\r' characters
           echo "result=$OUTPUT" >> $GITHUB_OUTPUT
 
-      - uses: actions/upload-artifact@65c4c4a1ddee5b72f698fdd19549f0f0fb45cf08 # v4.6.0
+      - uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4.6.2
         with:
           name: benchmark-test-results
           path: test/results/**/*
 
       - name: Update PR benchmark results comment
-        uses: marocchino/sticky-pull-request-comment@52423e01640425a022ef5fd42c6fb5f633a02728 #v2.9.1
+        uses: marocchino/sticky-pull-request-comment@67d0dec7b07ed060a405f9b2a64b8ab319fdd7db #v2.9.2
         continue-on-error: true
         with:
           header: benchmark

.github/workflows/codeql-analysis.yml

@@ -21,7 +21,7 @@ jobs:
   analyze:
     name: Analyze
     runs-on: ubuntu-22.04-4core-16gb
-
+    if: github.repository == 'anchore/syft' # only run for main repo
     permissions:
       security-events: write
 
@@ -39,13 +39,13 @@ jobs:
       uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
     - name: Install Go
-      uses: actions/setup-go@f111f3307d8850f501ac008e886eec1fd1932a34 #v5.3.0
+      uses: actions/setup-go@0aaccfd150d50ccaeb58ebd88d36e91967a5f35b #v5.4.0
       with:
         go-version-file: go.mod
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@9e8d0789d4a0fa9ceb6b1738f7e269594bdd67f0 #v3.28.9
+      uses: github/codeql-action/init@60168efe1c415ce0f5521ea06d5c2062adbeed1b #v3.28.17
       with:
         languages: ${{ matrix.language }}
         # If you wish to specify custom queries, you can do so here or in a config file.
@@ -56,7 +56,7 @@ jobs:
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
-      uses: github/codeql-action/autobuild@9e8d0789d4a0fa9ceb6b1738f7e269594bdd67f0 #v3.28.9
+      uses: github/codeql-action/autobuild@60168efe1c415ce0f5521ea06d5c2062adbeed1b #v3.28.17
 
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 https://git.io/JvXDl
@@ -70,4 +70,4 @@ jobs:
     #   make release
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@9e8d0789d4a0fa9ceb6b1738f7e269594bdd67f0 #v3.28.9
+      uses: github/codeql-action/analyze@60168efe1c415ce0f5521ea06d5c2062adbeed1b #v3.28.17

.github/workflows/detect-schema-changes.yaml

@@ -40,7 +40,7 @@ jobs:
 
       - name: Delete existing comment
         if: ${{ hashFiles( env.CI_COMMENT_FILE ) == '' }}
-        uses: marocchino/sticky-pull-request-comment@52423e01640425a022ef5fd42c6fb5f633a02728 #v2.9.1
+        uses: marocchino/sticky-pull-request-comment@67d0dec7b07ed060a405f9b2a64b8ab319fdd7db #v2.9.2
         with:
           header: ${{ env.COMMENT_HEADER }}
           hide: true
@@ -48,7 +48,7 @@ jobs:
 
       - name: Add comment
         if: ${{ hashFiles( env.CI_COMMENT_FILE ) != '' }}
-        uses: marocchino/sticky-pull-request-comment@52423e01640425a022ef5fd42c6fb5f633a02728 #v2.9.1
+        uses: marocchino/sticky-pull-request-comment@67d0dec7b07ed060a405f9b2a64b8ab319fdd7db #v2.9.2
         with:
           header: ${{ env.COMMENT_HEADER }}
           path: ${{ env.CI_COMMENT_FILE }}

.github/workflows/release.yaml

@@ -113,13 +113,13 @@ jobs:
         uses: ./.github/actions/bootstrap
 
       - name: Login to Docker Hub
-        uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567  #v3.3.0
+        uses: docker/login-action@74a5d142397b4f367a81961eba4e8cd7edddf772  #v3.4.0
         with:
           username: ${{ secrets.ANCHOREOSSWRITE_DH_USERNAME }}
           password: ${{ secrets.ANCHOREOSSWRITE_DH_PAT }}
 
       - name: Login to GitHub Container Registry
-        uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567  #v3.3.0
+        uses: docker/login-action@74a5d142397b4f367a81961eba4e8cd7edddf772  #v3.4.0
         with:
           registry: ghcr.io
           username: ${{ github.actor }}
@@ -148,13 +148,13 @@ jobs:
           # for updating brew formula in anchore/homebrew-syft
           GITHUB_BREW_TOKEN: ${{ secrets.ANCHOREOPS_GITHUB_OSS_WRITE_TOKEN }}
 
-      - uses: anchore/sbom-action@f325610c9f50a54015d37c8d16cb3b0e2c8f4de0 #v0.18.0
+      - uses: anchore/sbom-action@9f7302141466aa6482940f15371237e9d9f4c34a #v0.19.0
         continue-on-error: true
         with:
           file: go.mod
           artifact-name: sbom.spdx.json
 
-      - uses: 8398a7/action-slack@28ba43ae48961b90635b50953d216767a6bea486 #v3.16.2
+      - uses: 8398a7/action-slack@1750b5085f3ec60384090fb7c52965ef822e869e #v3.18.0
         continue-on-error: true
         with:
           status: ${{ job.status }}

.github/workflows/test-fixture-cache-publish.yaml

@@ -15,6 +15,7 @@ jobs:
     name: "Publish test fixture image cache"
     # we use this runner to get enough storage space for docker images and fixture cache
     runs-on: ubuntu-22.04-4core-16gb
+    if: github.repository == 'anchore/syft' # only run for main repo
     permissions:
       packages: write
     steps:

.github/workflows/update-anchore-dependencies.yml

@@ -35,7 +35,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@67ccf781d68cd99b580ae25a5c18a1cc84ffff1f #v7.0.6
+      - uses: peter-evans/create-pull-request@271a8d0340265f705b14b6d32b9829c1cb33d45e #v7.0.8
         with:
           signoff: true
           delete-branch: true

.github/workflows/update-bootstrap-tools.yml

@@ -49,7 +49,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@67ccf781d68cd99b580ae25a5c18a1cc84ffff1f #v7.0.6
+      - uses: peter-evans/create-pull-request@271a8d0340265f705b14b6d32b9829c1cb33d45e #v7.0.8
         with:
           signoff: true
           delete-branch: true

.github/workflows/update-cpe-dictionary-index.yml

@@ -33,7 +33,7 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@67ccf781d68cd99b580ae25a5c18a1cc84ffff1f #v7.0.6
+      - uses: peter-evans/create-pull-request@271a8d0340265f705b14b6d32b9829c1cb33d45e #v7.0.8
         with:
           signoff: true
           delete-branch: true
@@ -45,7 +45,7 @@ jobs:
             Update CPE dictionary index based on the latest available CPE dictionary
           token: ${{ steps.generate-token.outputs.token }}
 
-      - uses: 8398a7/action-slack@28ba43ae48961b90635b50953d216767a6bea486 #v3.16.2
+      - uses: 8398a7/action-slack@1750b5085f3ec60384090fb7c52965ef822e869e #v3.18.0
         with:
           status: ${{ job.status }}
           fields: workflow,eventName,job

.github/workflows/validations.yaml

@@ -29,7 +29,8 @@ jobs:
   Unit-Test:
     # Note: changing this job name requires making the same update in the .github/workflows/release.yaml pipeline
     name: "Unit tests"
-    runs-on: ubuntu-24.04
+    # we need more storage than what's on the default runner
+    runs-on: ubuntu-22.04-4core-16gb
     steps:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
@@ -78,7 +79,7 @@ jobs:
       # why not use actions/upload-artifact? It is very slow (3 minutes to upload ~600MB of data, vs 10 seconds with this approach).
       # see https://github.com/actions/upload-artifact/issues/199 for more info
       - name: Upload snapshot artifacts
-        uses: actions/cache/save@0c907a75c2c80ebcb7f088228285e798b750cf8f #v4.2.1
+        uses: actions/cache/save@5a3ec84eff668545956fd18022155c47e93e2684 #v4.2.3
         with:
           # we need to preserve the snapshot data itself as well as the task data that confirms if the
           # snapshot build is stale or not. Otherwise the downstream jobs will attempt to rebuild the snapshot
@@ -89,6 +90,61 @@ jobs:
           key: snapshot-build-${{ github.run_id }}
 
 
+  Upload-Snapshot-Artifacts:
+    # Note: changing this job name requires making the same update in the .github/workflows/release.yaml pipeline
+    name: "Upload snapshot artifacts"
+    needs: [Build-Snapshot-Artifacts]
+    runs-on: ubuntu-24.04
+    steps:
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
+
+      - name: Bootstrap environment
+        uses: ./.github/actions/bootstrap
+        with:
+          download-test-fixture-cache: true
+
+      - name: Download snapshot build
+        id: snapshot-cache
+        uses: actions/cache/restore@5a3ec84eff668545956fd18022155c47e93e2684 #v4.2.3
+        with:
+          path: |
+            snapshot
+            .task
+          fail-on-cache-miss: true
+          key: snapshot-build-${{ github.run_id }}
+
+      # workaround for https://github.com/actions/cache/issues/1265
+      - name: (cache-miss) Snapshot build missing
+        if: steps.snapshot-cache.outputs.cache-hit != 'true'
+        run: echo "unable to download snapshots from previous job" && false
+
+      - run: npm install @actions/artifact@2.2.2
+
+      - uses: actions/github-script@v7
+        with:
+          script: |
+            const { readdirSync } = require('fs')
+            const { DefaultArtifactClient } = require('@actions/artifact')
+            const artifact = new DefaultArtifactClient()
+            const ls = d => readdirSync(d, { withFileTypes: true })
+            const baseDir = "./snapshot"
+            const dirs = ls(baseDir).filter(f => f.isDirectory()).map(f => f.name)
+            const uploads = []
+            for (const dir of dirs) {
+              // uploadArtifact returns Promise<{id, size}>
+              uploads.push(artifact.uploadArtifact(
+                // name of the archive:
+                `${dir}`,
+                // array of all files to include:
+                ls(`${baseDir}/${dir}`).map(f => `${baseDir}/${dir}/${f.name}`),
+                // base directory to trim from entries:
+                `${baseDir}/${dir}`,
+                { retentionDays: 30 }
+              ))
+            }
+            // wait for all uploads to finish
+            Promise.all(uploads)
+
   Acceptance-Linux:
     # Note: changing this job name requires making the same update in the .github/workflows/release.yaml pipeline
     name: "Acceptance tests (Linux)"
@@ -104,7 +160,7 @@ jobs:
 
       - name: Download snapshot build
         id: snapshot-cache
-        uses: actions/cache/restore@0c907a75c2c80ebcb7f088228285e798b750cf8f #v4.2.1
+        uses: actions/cache/restore@5a3ec84eff668545956fd18022155c47e93e2684 #v4.2.3
         with:
           path: |
             snapshot
@@ -139,7 +195,7 @@ jobs:
     runs-on: macos-latest
     steps:
       - name: Install Cosign
-        uses: sigstore/cosign-installer@v3.8.0
+        uses: sigstore/cosign-installer@v3.8.2
 
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 
@@ -152,7 +208,7 @@ jobs:
 
       - name: Download snapshot build
         id: snapshot-cache
-        uses: actions/cache/restore@0c907a75c2c80ebcb7f088228285e798b750cf8f #v4.2.1
+        uses: actions/cache/restore@5a3ec84eff668545956fd18022155c47e93e2684 #v4.2.3
         with:
           path: |
             snapshot
@@ -187,7 +243,7 @@ jobs:
 
       - name: Download snapshot build
         id: snapshot-cache
-        uses: actions/cache/restore@0c907a75c2c80ebcb7f088228285e798b750cf8f #v4.2.1
+        uses: actions/cache/restore@5a3ec84eff668545956fd18022155c47e93e2684 #v4.2.3
         with:
           path: |
             snapshot
@@ -214,6 +270,7 @@ jobs:
       - Acceptance-Linux
       - Acceptance-Mac
       - Cli-Linux
+      - Upload-Snapshot-Artifacts
     steps:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
 

.golangci.yaml

@@ -1,15 +1,8 @@
-issues:
-  max-same-issues: 25
-  uniq-by-line: false
-
-  # TODO: enable this when we have coverage on docstring comments
-#  # The list of ids of default excludes to include or disable.
-#  include:
-#    - EXC0002 # disable excluding of issues about comments from golint
-
+version: "2"
+run:
+  tests: false
 linters:
-  # inverted configuration with `enable-all` and `disable` is not scalable during updates of golangci-lint
-  disable-all: true
+  default: none
   enable:
     - asciicheck
     - bodyclose
@@ -22,11 +15,8 @@ linters:
     - goconst
     - gocritic
     - gocyclo
-    - gofmt
-    - goimports
     - goprintffuncname
     - gosec
-    - gosimple
     - govet
     - ineffassign
     - misspell
@@ -34,36 +24,35 @@ linters:
     - nolintlint
     - revive
     - staticcheck
-    - stylecheck
-    - typecheck
     - unconvert
     - unparam
     - unused
     - whitespace
-
-linters-settings:
-  funlen:
-    # Checks the number of lines in a function.
-    # If lower than 0, disable the check.
-    # Default: 60
-    lines: 70
-    # Checks the number of statements in a function.
-    # If lower than 0, disable the check.
-    # Default: 40
-    statements: 50
-  gocritic:
-    enabled-checks:
-      - deferInLoop
-      - ruleguard
-    settings:
-      ruleguard:
-        rules: "test/rules/rules.go"
-  gosec:
-    excludes:
-      - G115
-run:
-  timeout: 10m
-  tests: false
+  settings:
+    funlen:
+      lines: 70
+      statements: 50
+    gocritic:
+      enabled-checks:
+        - deferInLoop
+        - ruleguard
+      settings:
+        ruleguard:
+          rules: test/rules/rules.go
+    gosec:
+      excludes:
+        - G115
+  exclusions:
+    generated: lax
+    presets:
+      - comments
+      - common-false-positives
+      - legacy
+      - std-error-handling
+    paths:
+      - third_party$
+      - builtin$
+      - examples$
 
 # do not enable...
 #    - deadcode          # The owner seems to have abandoned the linter. Replaced by "unused".
@@ -90,3 +79,23 @@ run:
 #    - testpackage
 #    - varcheck     # The owner seems to have abandoned the linter. Replaced by "unused".
 #    - wsl          # this doens't have an auto-fixer yet and is pretty noisy (https://github.com/bombsimon/wsl/issues/90)
+
+issues:
+  max-same-issues: 25
+  uniq-by-line: false
+
+# TODO: enable this when we have coverage on docstring comments
+#  # The list of ids of default excludes to include or disable.
+#  include:
+#    - EXC0002 # disable excluding of issues about comments from golint
+
+formatters:
+  enable:
+    - gofmt
+    - goimports
+  exclusions:
+    generated: lax
+    paths:
+      - third_party$
+      - builtin$
+      - examples$

DEVELOPING.md

@@ -227,6 +227,16 @@ rough outline how that works:
 
 ## Testing
 
+### Testing commands
+
+* `make help` shows a list of available commands
+* `make unit`, `make integration`, `make cli`, and `make acceptance` run those test suites (see below)
+* `make test` runs all those tests (and is therefore pretty slow)
+* `make fixtures` clears and re-fetches all test fixtures.
+* `go test ./syft/pkg/` for example can test particular packages, assuming fixtures are already made
+* `make clean-cache` cleans all test cache. Note that subsequent test runs will be slower after this
+
+
 ### Levels of testing
 
 - `unit`: The default level of test which is distributed throughout the repo are unit tests. Any `_test.go` file that 

README.md

@@ -140,11 +140,11 @@ Note that flags using the @<version> can be used for earlier versions of each sp
 - Linux kernel archives (vmlinz)
 - Linux kernel modules (ko)
 - Nix (outputs in /nix/store)
-- PHP (composer)
+- PHP (composer, PECL, Pear)
 - Python (wheel, egg, poetry, requirements.txt)
 - Red Hat (rpm)
 - Ruby (gem)
-- Rust (cargo.lock)
+- Rust (cargo.lock, auditable binary)
 - Swift (cocoapods, swift-package-manager)
 - Wordpress plugins
 - Terraform providers (.terraform.lock.hcl)

Taskfile.yaml

@@ -224,7 +224,7 @@ tasks:
       - "go run -race cmd/syft/main.go alpine:latest"
 
   validate-cyclonedx-schema:
-    desc: Run integration tests
+    desc: Validate that Syft produces valid CycloneDX documents
     cmds:
       - "cd schema/cyclonedx && make"
 
@@ -581,7 +581,7 @@ tasks:
       - "{{ .NEXT_VERSION }}"
     cmds:
       - "{{ .TOOL_DIR }}/chronicle -vv -n --version-file {{ .NEXT_VERSION }} > {{ .CHANGELOG }}"
-      - "{{ .TOOL_DIR }}/glow {{ .CHANGELOG }}"
+      - "{{ .TOOL_DIR }}/glow -w 0 {{ .CHANGELOG }}"
 
 
   ## Release targets #################################

cmd/syft/cli/ui/__snapshots__/handle_attestation_test.snap

@@ -1,6 +1,6 @@
 
 [TestHandler_handleAttestationStarted/attesting_in_progress/task_line - 1]
- ⠋ Creating a thing                                                                running a thing
+ ⠋ Creating a thing                                                               running a thing 
 ---
 
 [TestHandler_handleAttestationStarted/attesting_in_progress/log - 1]
@@ -11,7 +11,7 @@
 ---
 
 [TestHandler_handleAttestationStarted/attesting_complete/task_line - 1]
- ✔ Created a thing                                                                 running a thing
+ ✔ Created a thing                                                                running a thing 
 ---
 
 [TestHandler_handleAttestationStarted/attesting_complete/log - 1]

cmd/syft/cli/ui/__snapshots__/handle_fetch_image_test.snap

@@ -1,8 +1,8 @@
 
 [TestHandler_handleFetchImage/fetch_image_in_progress - 1]
- ⠋ Loading image                   ━━━━━━━━━━━━━━━━━━━━  [current]                       the-image
+ ⠋ Loading image                   ━━━━━━━━━━━━━━━━━━━━  [current]                      the-image 
 ---
 
 [TestHandler_handleFetchImage/fetch_image_complete - 1]
- ✔ Loaded image                                                                          the-image
+ ✔ Loaded image                                                                         the-image 
 ---

cmd/syft/cli/ui/__snapshots__/handle_file_indexing_test.snap

@@ -1,8 +1,8 @@
 
 [TestHandler_handleFileIndexingStarted/cataloging_in_progress - 1]
- ⠋ Indexing file system            ━━━━━━━━━━━━━━━━━━━━  [current]                      /some/path
+ ⠋ Indexing file system            ━━━━━━━━━━━━━━━━━━━━  [current]                     /some/path 
 ---
 
 [TestHandler_handleFileIndexingStarted/cataloging_complete - 1]
- ✔ Indexed file system                                                                  /some/path
+ ✔ Indexed file system                                                                 /some/path 
 ---

cmd/syft/cli/ui/__snapshots__/handle_read_image_test.snap

@@ -1,8 +1,8 @@
 
 [TestHandler_handleReadImage/read_image_in_progress - 1]
- ⠋ Parsing image                   ━━━━━━━━━━━━━━━━━━━━                                         id
+ ⠋ Parsing image                   ━━━━━━━━━━━━━━━━━━━━                                        id 
 ---
 
 [TestHandler_handleReadImage/read_image_complete - 1]
- ✔ Parsed image                                                                                 id
+ ✔ Parsed image                                                                                id 
 ---

cmd/syft/internal/commands/attest.go

@@ -52,7 +52,7 @@ func Attest(app clio.Application) *cobra.Command {
 	opts := defaultAttestOptions()
 
 	// template format explicitly not allowed
-	opts.Format.Template.Enabled = false
+	opts.Template.Enabled = false
 
 	return app.SetupCommand(&cobra.Command{
 		Use:   "attest --output [FORMAT] <IMAGE>",
@@ -136,7 +136,7 @@ func writeSBOMToFormattedFile(s *sbom.SBOM, sbomFile io.Writer, opts *attestOpti
 		return fmt.Errorf("no output file provided")
 	}
 
-	encs, err := opts.Format.Encoders()
+	encs, err := opts.Encoders()
 	if err != nil {
 		return fmt.Errorf("unable to create encoders: %w", err)
 	}

cmd/syft/internal/commands/cataloger_list.go

@@ -13,6 +13,7 @@ import (
 	"github.com/spf13/cobra"
 
 	"github.com/anchore/clio"
+	"github.com/anchore/syft/cmd/syft/internal/options"
 	"github.com/anchore/syft/internal/bus"
 	"github.com/anchore/syft/internal/task"
 	"github.com/anchore/syft/syft/cataloging"
@@ -86,11 +87,13 @@ func runCatalogerList(opts *catalogerListOptions) error {
 }
 
 func catalogerListReport(opts *catalogerListOptions, allTaskGroups [][]task.Task) (string, error) {
+	defaultCatalogers := options.Flatten(opts.DefaultCatalogers)
+	selectCatalogers := options.Flatten(opts.SelectCatalogers)
 	selectedTaskGroups, selectionEvidence, err := task.SelectInGroups(
 		allTaskGroups,
 		cataloging.NewSelectionRequest().
-			WithDefaults(opts.DefaultCatalogers...).
-			WithExpression(opts.SelectCatalogers...),
+			WithDefaults(defaultCatalogers...).
+			WithExpression(selectCatalogers...),
 	)
 	if err != nil {
 		return "", fmt.Errorf("unable to select catalogers: %w", err)
@@ -99,7 +102,7 @@ func catalogerListReport(opts *catalogerListOptions, allTaskGroups [][]task.Task
 
 	switch opts.Output {
 	case "json":
-		report, err = renderCatalogerListJSON(flattenTaskGroups(selectedTaskGroups), selectionEvidence, opts.DefaultCatalogers, opts.SelectCatalogers)
+		report, err = renderCatalogerListJSON(flattenTaskGroups(selectedTaskGroups), selectionEvidence, defaultCatalogers, selectCatalogers)
 	case "table", "":
 		if opts.ShowHidden {
 			report = renderCatalogerListTables(allTaskGroups, selectionEvidence)

cmd/syft/internal/commands/cataloger_list_test.go

@@ -184,11 +184,11 @@ Default selections: 1
   • 'image'
 Selection expressions: 6
   • 'b' (intersect)
-  • '-directory' (remove)
   • '-c' (remove)
+  • '-directory' (remove)
   • '-file' (remove)
-  • '+task3' (add)
   • '+file-task1' (add)
+  • '+task3' (add)
 ┌────────────────┬──────────────────┐
 │ FILE CATALOGER │ TAGS             │
 ├────────────────┼──────────────────┤
@@ -200,6 +200,43 @@ Selection expressions: 6
 │ task1             │ 1, a, b, image     │
 │ task3             │ 3, c, d, directory │
 └───────────────────┴────────────────────┘
+`,
+		},
+		{
+			name: "with comma separated expressions, table",
+			options: func() *catalogerListOptions {
+				c := defaultCatalogerListOptions()
+				c.Output = "table"
+				c.DefaultCatalogers = []string{
+					"image,task3,file-task1",
+				}
+				c.SelectCatalogers = []string{
+					"-task2,c,b",
+				}
+				return c
+			}(),
+			want: `
+Default selections: 4
+  • 'file-task1'
+  • 'image'
+  • 'task3'
+  • 'file'
+Selection expressions: 3
+  • 'b' (intersect)
+  • 'c' (intersect)
+  • '-task2' (remove)
+┌────────────────┬──────────────────┐
+│ FILE CATALOGER │ TAGS             │
+├────────────────┼──────────────────┤
+│ file-task1     │ file, ft, ft-1-b │
+│ file-task2     │ file, ft, ft-2-b │
+└────────────────┴──────────────────┘
+┌───────────────────┬────────────────────┐
+│ PACKAGE CATALOGER │ TAGS               │
+├───────────────────┼────────────────────┤
+│ task1             │ 1, a, b, image     │
+│ task3             │ 3, c, d, directory │
+└───────────────────┴────────────────────┘
 `,
 		},
 		{
@@ -219,7 +256,7 @@ Selection expressions: 6
 				return c
 			}(),
 			want: `
-{"default":["image"],"selection":["-directory","+task3","-c","b"],"catalogers":[{"name":"file-task1","tags":["file"]},{"name":"file-task2","tags":["file"]},{"name":"task1","tags":["b","image"]},{"name":"task3","tags":["task3"]}]}
+{"default":["image"],"selection":["+task3","-c","-directory","b"],"catalogers":[{"name":"file-task1","tags":["file"]},{"name":"file-task2","tags":["file"]},{"name":"task1","tags":["b","image"]},{"name":"task3","tags":["task3"]}]}
 `,
 		},
 	}

cmd/syft/internal/commands/scan.go

@@ -110,7 +110,7 @@ func (o *scanOptions) PostLoad() error {
 }
 
 func (o *scanOptions) validateLegacyOptionsNotUsed() error {
-	if len(fangs.Flatten(o.Config.ConfigFile)) == 0 {
+	if len(fangs.Flatten(o.ConfigFile)) == 0 {
 		return nil
 	}
 
@@ -122,7 +122,7 @@ func (o *scanOptions) validateLegacyOptionsNotUsed() error {
 		File                            any     `yaml:"file" json:"file" mapstructure:"file"`
 	}
 
-	for _, f := range fangs.Flatten(o.Config.ConfigFile) {
+	for _, f := range fangs.Flatten(o.ConfigFile) {
 		by, err := os.ReadFile(f)
 		if err != nil {
 			return fmt.Errorf("unable to read config file during validations %q: %w", f, err)

cmd/syft/internal/options/cache.go

@@ -10,9 +10,9 @@ import (
 	"time"
 
 	"github.com/adrg/xdg"
-	"github.com/mitchellh/go-homedir"
 
 	"github.com/anchore/clio"
+	"github.com/anchore/go-homedir"
 	"github.com/anchore/syft/internal/cache"
 	"github.com/anchore/syft/internal/log"
 )

cmd/syft/internal/options/cache_test.go

@@ -9,9 +9,9 @@ import (
 	"time"
 
 	"github.com/adrg/xdg"
-	"github.com/mitchellh/go-homedir"
 	"github.com/stretchr/testify/require"
 
+	"github.com/anchore/go-homedir"
 	"github.com/anchore/syft/internal"
 	"github.com/anchore/syft/internal/cache"
 )
@@ -57,35 +57,13 @@ func Test_defaultDir(t *testing.T) {
 		env[k] = os.Getenv(k)
 	}
 
-	unsetEnv := func(t *testing.T) {
-		for k := range env {
-			t.Setenv(k, "")
-		}
-	}
-
-	resetEnv := func() {
-		for k, v := range env {
-			if v == "" {
-				_ = os.Unsetenv(k)
-			} else {
-				_ = os.Setenv(k, v)
-			}
-		}
-		homedir.Reset()
-		xdg.Reload()
-	}
-
-	t.Cleanup(resetEnv)
-
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
-			defer resetEnv()
+			restoreCache(t)
 
-			unsetEnv(t)
 			for k, v := range test.env {
-				t.Setenv(k, v)
+				patchEnv(t, k, v)
 			}
-			homedir.Reset()
 			xdg.Reload()
 
 			got := defaultDir()
@@ -311,3 +289,35 @@ func Test_durationToString(t *testing.T) {
 		})
 	}
 }
+
+// restoreCache ensures cache settings are restored after test
+func restoreCache(t testing.TB) {
+	t.Helper()
+	origEnabled := homedir.CacheEnabled()
+
+	t.Cleanup(func() {
+		homedir.SetCacheEnable(origEnabled)
+		homedir.Reset()
+	})
+}
+
+// patchEnv modifies an environment variable for the duration of the test
+func patchEnv(t testing.TB, key, value string) {
+	t.Helper()
+	original := os.Getenv(key)
+
+	if value != "" {
+		os.Setenv(key, value)
+	} else {
+		os.Unsetenv(key)
+	}
+
+	t.Cleanup(func() {
+		if original != "" {
+			os.Setenv(key, original)
+		} else {
+			os.Unsetenv(key)
+		}
+		xdg.Reload()
+	})
+}

cmd/syft/internal/options/catalog.go

@@ -24,6 +24,7 @@ import (
 	"github.com/anchore/syft/syft/pkg/cataloger/java"
 	"github.com/anchore/syft/syft/pkg/cataloger/javascript"
 	"github.com/anchore/syft/syft/pkg/cataloger/kernel"
+	"github.com/anchore/syft/syft/pkg/cataloger/nix"
 	"github.com/anchore/syft/syft/pkg/cataloger/python"
 	"github.com/anchore/syft/syft/source"
 )
@@ -48,6 +49,7 @@ type Catalog struct {
 	Java        javaConfig        `yaml:"java" json:"java" mapstructure:"java"`
 	JavaScript  javaScriptConfig  `yaml:"javascript" json:"javascript" mapstructure:"javascript"`
 	LinuxKernel linuxKernelConfig `yaml:"linux-kernel" json:"linux-kernel" mapstructure:"linux-kernel"`
+	Nix         nixConfig         `yaml:"nix" json:"nix" mapstructure:"nix"`
 	Python      pythonConfig      `yaml:"python" json:"python" mapstructure:"python"`
 
 	// configuration for the source (the subject being analyzed)
@@ -68,12 +70,14 @@ var _ interface {
 } = (*Catalog)(nil)
 
 func DefaultCatalog() Catalog {
+	cfg := syft.DefaultCreateSBOMConfig()
 	return Catalog{
 		Compliance:    defaultComplianceConfig(),
 		Scope:         source.SquashedScope.String(),
 		Package:       defaultPackageConfig(),
 		License:       defaultLicenseConfig(),
 		LinuxKernel:   defaultLinuxKernelConfig(),
+		Nix:           defaultNixConfig(),
 		Dotnet:        defaultDotnetConfig(),
 		Golang:        defaultGolangConfig(),
 		Java:          defaultJavaConfig(),
@@ -81,7 +85,7 @@ func DefaultCatalog() Catalog {
 		Relationships: defaultRelationshipsConfig(),
 		Unknowns:      defaultUnknowns(),
 		Source:        defaultSourceConfig(),
-		Parallelism:   1,
+		Parallelism:   cfg.Parallelism,
 	}
 }
 
@@ -167,7 +171,10 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 	return pkgcataloging.Config{
 		Binary: binary.DefaultClassifierCatalogerConfig(),
 		Dotnet: dotnet.DefaultCatalogerConfig().
-			WithCertificateValidation(cfg.Dotnet.EnableCertificateValidation),
+			WithDepPackagesMustHaveDLL(cfg.Dotnet.DepPackagesMustHaveDLL).
+			WithDepPackagesMustClaimDLL(cfg.Dotnet.DepPackagesMustClaimDLL).
+			WithPropagateDLLClaimsToParents(cfg.Dotnet.PropagateDLLClaimsToParents).
+			WithRelaxDLLClaimsWhenBundlingDetected(cfg.Dotnet.RelaxDLLClaimsWhenBundlingDetected),
 		Golang: golang.DefaultCatalogerConfig().
 			WithSearchLocalModCacheLicenses(*multiLevelOption(false, enrichmentEnabled(cfg.Enrich, task.Go, task.Golang), cfg.Golang.SearchLocalModCacheLicenses)).
 			WithLocalModCacheDir(cfg.Golang.LocalModCacheDir).
@@ -189,6 +196,8 @@ func (cfg Catalog) ToPackagesConfig() pkgcataloging.Config {
 		LinuxKernel: kernel.LinuxKernelCatalogerConfig{
 			CatalogModules: cfg.LinuxKernel.CatalogModules,
 		},
+		Nix: nix.DefaultConfig().
+			WithCaptureOwnedFiles(cfg.Nix.CaptureOwnedFiles),
 		Python: python.CatalogerConfig{
 			GuessUnpinnedRequirements: cfg.Python.GuessUnpinnedRequirements,
 		},
@@ -222,6 +231,9 @@ func (cfg *Catalog) AddFlags(flags clio.FlagSet) {
 	flags.StringArrayVarP(&cfg.Catalogers, "catalogers", "",
 		"enable one or more package catalogers")
 
+	flags.IntVarP(&cfg.Parallelism, "parallelism", "",
+		"number of cataloger workers to run in parallel")
+
 	if pfp, ok := flags.(fangs.PFlagSetProvider); ok {
 		if err := pfp.PFlagSet().MarkDeprecated("catalogers", "use: override-default-catalogers and select-catalogers"); err != nil {
 			panic(err)
@@ -250,7 +262,8 @@ func (cfg *Catalog) AddFlags(flags clio.FlagSet) {
 }
 
 func (cfg *Catalog) DescribeFields(descriptions fangs.FieldDescriptionSet) {
-	descriptions.Add(&cfg.Parallelism, "number of cataloger workers to run in parallel")
+	descriptions.Add(&cfg.Parallelism, `number of cataloger workers to run in parallel
+by default, when set to 0: this will be based on runtime.NumCPU * 4, if set to less than 0 it will be unbounded`)
 
 	descriptions.Add(&cfg.Enrich, fmt.Sprintf(`Enable data enrichment operations, which can utilize services such as Maven Central and NPM.
 By default all enrichment is disabled, use: all to enable everything.
@@ -265,12 +278,12 @@ func (cfg *Catalog) PostLoad() error {
 		return fmt.Errorf("cannot use both 'catalogers' and 'select-catalogers'/'default-catalogers' flags")
 	}
 
-	cfg.From = flatten(cfg.From)
+	cfg.From = Flatten(cfg.From)
 
-	cfg.Catalogers = flatten(cfg.Catalogers)
-	cfg.DefaultCatalogers = flatten(cfg.DefaultCatalogers)
-	cfg.SelectCatalogers = flatten(cfg.SelectCatalogers)
-	cfg.Enrich = flatten(cfg.Enrich)
+	cfg.Catalogers = Flatten(cfg.Catalogers)
+	cfg.DefaultCatalogers = Flatten(cfg.DefaultCatalogers)
+	cfg.SelectCatalogers = Flatten(cfg.SelectCatalogers)
+	cfg.Enrich = Flatten(cfg.Enrich)
 
 	// for backwards compatibility
 	cfg.DefaultCatalogers = append(cfg.DefaultCatalogers, cfg.Catalogers...)
@@ -288,7 +301,7 @@ func (cfg *Catalog) PostLoad() error {
 	return nil
 }
 
-func flatten(commaSeparatedEntries []string) []string {
+func Flatten(commaSeparatedEntries []string) []string {
 	var out []string
 	for _, v := range commaSeparatedEntries {
 		for _, s := range strings.Split(v, ",") {

cmd/syft/internal/options/catalog_test.go

@@ -139,7 +139,7 @@ func Test_enrichmentEnabled(t *testing.T) {
 
 	for _, test := range tests {
 		t.Run(test.directives, func(t *testing.T) {
-			got := enrichmentEnabled(flatten([]string{test.directives}), test.test)
+			got := enrichmentEnabled(Flatten([]string{test.directives}), test.test)
 			assert.Equal(t, test.expected, got)
 		})
 	}

cmd/syft/internal/options/dotnet.go

@@ -6,7 +6,13 @@ import (
 )
 
 type dotnetConfig struct {
-	EnableCertificateValidation bool `json:"enable-certificate-validation" yaml:"enable-certificate-validation" mapstructure:"enable-certificate-validation"`
+	DepPackagesMustHaveDLL bool `mapstructure:"dep-packages-must-have-dll" json:"dep-packages-must-have-dll" yaml:"dep-packages-must-have-dll"`
+
+	DepPackagesMustClaimDLL bool `mapstructure:"dep-packages-must-claim-dll" json:"dep-packages-must-claim-dll" yaml:"dep-packages-must-claim-dll"`
+
+	PropagateDLLClaimsToParents bool `mapstructure:"propagate-dll-claims-to-parents" json:"propagate-dll-claims-to-parents" yaml:"propagate-dll-claims-to-parents"`
+
+	RelaxDLLClaimsWhenBundlingDetected bool `mapstructure:"relax-dll-claims-when-bundling-detected" json:"relax-dll-claims-when-bundling-detected" yaml:"relax-dll-claims-when-bundling-detected"`
 }
 
 var _ interface {
@@ -14,12 +20,18 @@ var _ interface {
 } = (*dotnetConfig)(nil)
 
 func (o *dotnetConfig) DescribeFields(descriptions clio.FieldDescriptionSet) {
-	descriptions.Add(&o.EnableCertificateValidation, `enable certificate validation -- this requires an active internet connection to download certificates and CRLs`)
+	descriptions.Add(&o.DepPackagesMustHaveDLL, `only keep dep.json packages which an executable on disk is found. The package is also included if a DLL is found for any child package, even if the package itself does not have a DLL.`)
+	descriptions.Add(&o.DepPackagesMustClaimDLL, `only keep dep.json packages which have a runtime/resource DLL claimed in the deps.json targets section (but not necessarily found on disk). The package is also included if any child package claims a DLL, even if the package itself does not claim a DLL.`)
+	descriptions.Add(&o.PropagateDLLClaimsToParents, `treat DLL claims or on-disk evidence for child packages as DLL claims or on-disk evidence for any parent package`)
+	descriptions.Add(&o.RelaxDLLClaimsWhenBundlingDetected, `show all packages from the deps.json if bundling tooling is present as a dependency (e.g. ILRepack)`)
 }
 
 func defaultDotnetConfig() dotnetConfig {
 	def := dotnet.DefaultCatalogerConfig()
 	return dotnetConfig{
-		EnableCertificateValidation: def.EnableCertificateValidation,
+		DepPackagesMustHaveDLL:             def.DepPackagesMustHaveDLL,
+		DepPackagesMustClaimDLL:            def.DepPackagesMustClaimDLL,
+		PropagateDLLClaimsToParents:        def.PropagateDLLClaimsToParents,
+		RelaxDLLClaimsWhenBundlingDetected: def.RelaxDLLClaimsWhenBundlingDetected,
 	}
 }

cmd/syft/internal/options/nix.go

@@ -0,0 +1,25 @@
+package options
+
+import (
+	"github.com/anchore/clio"
+	"github.com/anchore/syft/syft/pkg/cataloger/nix"
+)
+
+type nixConfig struct {
+	CaptureOwnedFiles bool `json:"capture-owned-files" yaml:"capture-owned-files" mapstructure:"capture-owned-files"`
+}
+
+func defaultNixConfig() nixConfig {
+	def := nix.DefaultConfig()
+	return nixConfig{
+		def.CaptureOwnedFiles,
+	}
+}
+
+var _ interface {
+	clio.FieldDescriber
+} = (*nixConfig)(nil)
+
+func (o *nixConfig) DescribeFields(descriptions clio.FieldDescriptionSet) {
+	descriptions.Add(&o.CaptureOwnedFiles, `enumerate all files owned by packages found within Nix store paths`)
+}

cmd/syft/internal/options/output.go

@@ -89,7 +89,7 @@ func (o Output) SBOMWriter() (sbom.Writer, error) {
 
 	usesTemplateOutput := names.Has(string(template.ID))
 
-	if usesTemplateOutput && o.Format.Template.Path == "" {
+	if usesTemplateOutput && o.Template.Path == "" {
 		return nil, fmt.Errorf(`must specify path to template file when using "template" output format`)
 	}
 

cmd/syft/internal/options/output_file.go

@@ -3,10 +3,9 @@ package options
 import (
 	"fmt"
 
-	"github.com/mitchellh/go-homedir"
-
 	"github.com/anchore/clio"
 	"github.com/anchore/fangs"
+	"github.com/anchore/go-homedir"
 	"github.com/anchore/syft/syft/sbom"
 )
 

cmd/syft/internal/options/writer.go

@@ -10,9 +10,9 @@ import (
 	"strings"
 
 	"github.com/hashicorp/go-multierror"
-	"github.com/mitchellh/go-homedir"
 	"github.com/scylladb/go-set/strset"
 
+	"github.com/anchore/go-homedir"
 	"github.com/anchore/syft/internal/bus"
 	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/syft/format"

cmd/syft/internal/options/writer_test.go

@@ -6,10 +6,10 @@ import (
 	"strings"
 	"testing"
 
-	"github.com/docker/docker/pkg/homedir"
 	"github.com/stretchr/testify/assert"
 	"github.com/stretchr/testify/require"
 
+	"github.com/anchore/go-homedir"
 	"github.com/anchore/syft/syft/sbom"
 )
 
@@ -228,6 +228,8 @@ func Test_newSBOMMultiWriter(t *testing.T) {
 }
 
 func Test_newSBOMWriterDescription(t *testing.T) {
+	h, err := homedir.Dir()
+	require.NoError(t, err)
 	tests := []struct {
 		name     string
 		path     string
@@ -236,7 +238,7 @@ func Test_newSBOMWriterDescription(t *testing.T) {
 		{
 			name:     "expand home dir",
 			path:     "~/place.txt",
-			expected: filepath.Join(homedir.Get(), "place.txt"),
+			expected: filepath.Join(h, "place.txt"),
 		},
 		{
 			name:     "passthrough other paths",

cmd/syft/internal/test/integration/catalog_packages_cases_test.go

@@ -78,11 +78,27 @@ var imageOnlyTestCases = []testCase{
 		},
 	},
 	{
-		name:        "find dot net executable",
+		name:        "find .NET packages (deps.json + .dlls)",
 		pkgType:     pkg.DotnetPkg,
 		pkgLanguage: pkg.Dotnet,
 		pkgInfo: map[string]string{
+			// executable
 			"DocuSign.eSign": "6.8.0.0",
+			// deps.json
+			"AWSSDK.Core": "3.7.10.6",
+			"Microsoft.Extensions.DependencyInjection":              "6.0.0",
+			"Microsoft.Extensions.DependencyInjection.Abstractions": "6.0.0",
+			"Microsoft.Extensions.Logging":                          "6.0.0",
+			"Microsoft.Extensions.Logging.Abstractions":             "6.0.0",
+			"Microsoft.Extensions.Options":                          "6.0.0",
+			"Microsoft.Extensions.Primitives":                       "6.0.0",
+			"Newtonsoft.Json":                                       "13.0.1",
+			"Serilog":                                               "2.10.0",
+			"Serilog.Sinks.Console":                                 "4.0.1",
+			//"System.Diagnostics.DiagnosticSource":                   "6.0.0", // no dll claims in deps.json targets section
+			//"System.Runtime.CompilerServices.Unsafe":                "6.0.0", // no dll claims in deps.json targets section
+			"TestCommon":  "1.0.0",
+			"TestLibrary": "1.0.0",
 		},
 	},
 }
@@ -241,10 +257,11 @@ var dirOnlyTestCases = []testCase{
 		},
 	},
 	{
-		name:        "find dotnet packages",
+		name:        "find dotnet packages (.deps.json)",
 		pkgType:     pkg.DotnetPkg,
 		pkgLanguage: pkg.Dotnet,
 		pkgInfo: map[string]string{
+			// all from deps.json
 			"AWSSDK.Core": "3.7.10.6",
 			"Microsoft.Extensions.DependencyInjection":              "6.0.0",
 			"Microsoft.Extensions.DependencyInjection.Abstractions": "6.0.0",
@@ -255,10 +272,10 @@ var dirOnlyTestCases = []testCase{
 			"Newtonsoft.Json":                                       "13.0.1",
 			"Serilog":                                               "2.10.0",
 			"Serilog.Sinks.Console":                                 "4.0.1",
-			"System.Diagnostics.DiagnosticSource":                   "6.0.0",
-			"System.Runtime.CompilerServices.Unsafe":                "6.0.0",
-			"TestCommon":                                            "1.0.0",
-			"TestLibrary":                                           "1.0.0",
+			//"System.Diagnostics.DiagnosticSource":                   "6.0.0", // no dll claims in deps.json targets section
+			//"System.Runtime.CompilerServices.Unsafe":                "6.0.0", // no dll claims in deps.json targets section
+			"TestCommon":  "1.0.0",
+			"TestLibrary": "1.0.0",
 		},
 	},
 	{
@@ -485,8 +502,8 @@ var commonTestCases = []testCase{
 		},
 	},
 	{
-		name:        "find php pecl package",
-		pkgType:     pkg.PhpPeclPkg,
+		name:        "find php pear/pecl package",
+		pkgType:     pkg.PhpPearPkg,
 		pkgLanguage: pkg.PHP,
 		pkgInfo: map[string]string{
 			"memcached": "3.2.0",

cmd/syft/internal/test/integration/catalog_packages_test.go

@@ -12,6 +12,7 @@ import (
 	"github.com/anchore/stereoscope/pkg/imagetest"
 	"github.com/anchore/syft/syft"
 	"github.com/anchore/syft/syft/pkg"
+	"github.com/anchore/syft/syft/sbom"
 	"github.com/anchore/syft/syft/source"
 )
 
@@ -85,6 +86,7 @@ func TestPkgCoverageImage(t *testing.T) {
 	definedPkgs.Remove(string(pkg.GithubActionPkg))
 	definedPkgs.Remove(string(pkg.GithubActionWorkflowPkg))
 	definedPkgs.Remove(string(pkg.TerraformPkg))
+	definedPkgs.Remove(string(pkg.PhpPeclPkg)) // we have coverage for pear instead
 
 	var cases []testCase
 	cases = append(cases, commonTestCases...)
@@ -92,40 +94,7 @@ func TestPkgCoverageImage(t *testing.T) {
 
 	for _, c := range cases {
 		t.Run(c.name, func(t *testing.T) {
-			pkgCount := 0
-
-			for a := range sbom.Artifacts.Packages.Enumerate(c.pkgType) {
-				if a.Language.String() != "" {
-					observedLanguages.Add(a.Language.String())
-				}
-
-				observedPkgs.Add(string(a.Type))
-				expectedVersion, ok := c.pkgInfo[a.Name]
-				if !ok {
-					t.Errorf("unexpected package found: %s", a.Name)
-				}
-
-				if expectedVersion != a.Version {
-					t.Errorf("unexpected package version (pkg=%s): %s, expected: %s", a.Name, a.Version, expectedVersion)
-				}
-
-				if a.Language != c.pkgLanguage {
-					t.Errorf("bad language (pkg=%+v): %+v", a.Name, a.Language)
-				}
-
-				if a.Type != c.pkgType {
-					t.Errorf("bad package type (pkg=%+v): %+v", a.Name, a.Type)
-				}
-				pkgCount++
-			}
-
-			if pkgCount != len(c.pkgInfo)+c.duplicates {
-				t.Logf("Discovered packages of type %+v", c.pkgType)
-				for a := range sbom.Artifacts.Packages.Enumerate(c.pkgType) {
-					t.Log("   ", a)
-				}
-				t.Fatalf("unexpected package count: %d!=%d", pkgCount, len(c.pkgInfo))
-			}
+			assertPackages(t, sbom, c, observedLanguages, observedPkgs)
 		})
 	}
 
@@ -175,44 +144,7 @@ func TestPkgCoverageDirectory(t *testing.T) {
 
 	for _, test := range cases {
 		t.Run(test.name, func(t *testing.T) {
-			actualPkgCount := 0
-
-			for actualPkg := range sbom.Artifacts.Packages.Enumerate(test.pkgType) {
-				observedLanguages.Add(actualPkg.Language.String())
-				observedPkgs.Add(string(actualPkg.Type))
-
-				expectedVersion, ok := test.pkgInfo[actualPkg.Name]
-				if !ok {
-					t.Errorf("unexpected package found: %s", actualPkg.Name)
-				}
-
-				if expectedVersion != actualPkg.Version {
-					t.Errorf("unexpected package version (pkg=%s): %s", actualPkg.Name, actualPkg.Version)
-				}
-
-				var foundLang bool
-				for _, lang := range strings.Split(test.pkgLanguage.String(), ",") {
-					if actualPkg.Language.String() == lang {
-						foundLang = true
-						break
-					}
-				}
-				if !foundLang {
-					t.Errorf("bad language (pkg=%+v): %+v", actualPkg.Name, actualPkg.Language)
-				}
-
-				if actualPkg.Type != test.pkgType {
-					t.Errorf("bad package type (pkg=%+v): %+v", actualPkg.Name, actualPkg.Type)
-				}
-				actualPkgCount++
-			}
-
-			if actualPkgCount != len(test.pkgInfo)+test.duplicates {
-				for actualPkg := range sbom.Artifacts.Packages.Enumerate(test.pkgType) {
-					t.Log("   ", actualPkg)
-				}
-				t.Fatalf("unexpected package count: %d!=%d", actualPkgCount, len(test.pkgInfo))
-			}
+			assertPackages(t, sbom, test, observedLanguages, observedPkgs)
 		})
 	}
 
@@ -227,6 +159,7 @@ func TestPkgCoverageDirectory(t *testing.T) {
 	definedPkgs.Remove(string(pkg.LinuxKernelModulePkg))
 	definedPkgs.Remove(string(pkg.Rpkg))
 	definedPkgs.Remove(string(pkg.UnknownPkg))
+	definedPkgs.Remove(string(pkg.PhpPeclPkg)) // this is covered as pear packages
 
 	// for directory scans we should not expect to see any of the following package types
 	definedPkgs.Remove(string(pkg.KbPkg))
@@ -241,6 +174,61 @@ func TestPkgCoverageDirectory(t *testing.T) {
 	}
 }
 
+func assertPackages(t *testing.T, sbom sbom.SBOM, test testCase, observedLanguages *strset.Set, observedPkgs *strset.Set) {
+	actualPkgCount := 0
+
+	for actualPkg := range sbom.Artifacts.Packages.Enumerate(test.pkgType) {
+		observedLanguages.Add(actualPkg.Language.String())
+		observedPkgs.Add(string(actualPkg.Type))
+
+		expectedVersion, ok := test.pkgInfo[actualPkg.Name]
+		if !ok {
+			t.Errorf("unexpected package found: %s", actualPkg.Name)
+		}
+
+		if expectedVersion != actualPkg.Version {
+			t.Errorf("unexpected package version (pkg=%s): %s", actualPkg.Name, actualPkg.Version)
+		}
+
+		var foundLang bool
+		for _, lang := range strings.Split(test.pkgLanguage.String(), ",") {
+			if actualPkg.Language.String() == lang {
+				foundLang = true
+				break
+			}
+		}
+		if !foundLang {
+			t.Errorf("bad language (pkg=%+v): %+v", actualPkg.Name, actualPkg.Language)
+		}
+
+		if actualPkg.Type != test.pkgType {
+			t.Errorf("bad package type (pkg=%+v): %+v", actualPkg.Name, actualPkg.Type)
+		}
+		actualPkgCount++
+
+		// all packages should have at least one location associated with it, and of those locations at least one should be primary evidence
+		locs := actualPkg.Locations.ToSlice()
+		assert.NotEmpty(t, locs, "package %q has no locations (type=%q)", actualPkg.Name, actualPkg.Type)
+		var primaryEvidenceFound bool
+		for _, l := range locs {
+			if _, exists := l.Annotations[pkg.EvidenceAnnotationKey]; !exists {
+				t.Errorf("missing evidence annotation (pkg=%s type=%s)", actualPkg.Name, actualPkg.Type)
+			}
+			if l.Annotations[pkg.EvidenceAnnotationKey] == pkg.PrimaryEvidenceAnnotation {
+				primaryEvidenceFound = true
+			}
+		}
+		assert.True(t, primaryEvidenceFound, "no primary evidence found for package %q", actualPkg.Name)
+	}
+
+	if actualPkgCount != len(test.pkgInfo)+test.duplicates {
+		for actualPkg := range sbom.Artifacts.Packages.Enumerate(test.pkgType) {
+			t.Log("   ", actualPkg)
+		}
+		t.Fatalf("unexpected package count: %d!=%d", actualPkgCount, len(test.pkgInfo))
+	}
+}
+
 func TestPkgCoverageImage_HasEvidence(t *testing.T) {
 	sbom, _ := catalogFixtureImage(t, "image-pkg-coverage", source.SquashedScope)
 

cmd/syft/internal/test/integration/package_catalogers_represented_test.go

@@ -52,8 +52,18 @@ func TestAllPackageCatalogersReachableInTasks(t *testing.T) {
 
 	assert.Equal(t, len(taskTagsByName), constructorCount, "mismatch in number of cataloger constructors and task names")
 
+	exceptions := strset.New(
+		// not reachable since they are deprecated
+		"dotnet-portable-executable-cataloger",
+		"dotnet-deps-cataloger",
+		"nix-store-cataloger",
+		"php-pecl-serialized-cataloger",
+		// not reachable by design
+		"sbom-cataloger",
+	)
+
 	for taskName, tags := range taskTagsByName {
-		if taskName == "sbom-cataloger" {
+		if exceptions.Has(taskName) {
 			continue // this is a special case
 		}
 		if !strset.New(tags...).HasAny(pkgcataloging.ImageTag, pkgcataloging.DirectoryTag) {

cmd/syft/internal/test/integration/test-fixtures/image-pkg-coverage/pkgs/php/.registry/.channel.pecl.php.net/memcached.reg

@@ -1 +1 @@
-a:5:{s:4:"name";s:9:"memcached";s:4:"date";s:10:"2022-01-11";s:4:"time";s:8:"15:23:47";s:7:"version";a:2:{s:7:"release";s:5:"3.2.0";s:3:"api";s:5:"3.2.0";}s:7:"license";a:2:{s:7:"attribs";a:1:{s:3:"uri";s:26:"http://www.php.net/license";}s:8:"_content";s:11:"PHP License";}}
+a:6:{s:4:"name";s:9:"memcached";s:7:"channel";s:12:"pecl.php.net";s:4:"date";s:10:"2022-01-11";s:4:"time";s:8:"15:23:47";s:7:"version";a:2:{s:7:"release";s:5:"3.2.0";s:3:"api";s:5:"3.2.0";}s:7:"license";a:2:{s:7:"attribs";a:1:{s:3:"uri";s:26:"http://www.php.net/license";}s:8:"_content";s:11:"PHP License";}}

cmd/syft/internal/test/integration/test-fixtures/image-pkg-coverage/pkgs/var/lib/rpm/generate-fixture.sh

@@ -1,7 +1,7 @@
 #!/usr/bin/env bash
 set -eux
 
-docker create --name generate-rpmdb-fixture centos:latest sh -c 'tail -f /dev/null'
+docker create --name generate-rpmdb-fixture rockylinux:9 sh -c 'tail -f /dev/null'
 
 function cleanup {
   docker kill generate-rpmdb-fixture

cmd/syft/internal/ui/capture.go

@@ -36,11 +36,7 @@ func capture(target **os.File, writer io.Writer, bufSize int) func() {
 		}()
 
 		buf := make([]byte, bufSize)
-		for {
-			if original == nil {
-				break
-			}
-
+		for original != nil {
 			n, err := r.Read(buf)
 			if n > 0 {
 				_, _ = writer.Write(buf[0:n])

examples/create_custom_sbom/alpine_configuration_cataloger.go

@@ -6,6 +6,7 @@ import (
 	"io"
 	"path"
 
+	"github.com/anchore/syft/internal"
 	"github.com/anchore/syft/syft/artifact"
 	"github.com/anchore/syft/syft/file"
 	"github.com/anchore/syft/syft/pkg"
@@ -76,7 +77,6 @@ func newAlpineConfiguration(resolver file.Resolver) (*AlpineConfiguration, []fil
 	return &AlpineConfiguration{
 		APKKeys: keys,
 	}, locations, nil
-
 }
 
 func getVersion(resolver file.Resolver) (string, []file.Location, error) {
@@ -92,6 +92,7 @@ func getVersion(resolver file.Resolver) (string, []file.Location, error) {
 	if err != nil {
 		return "", nil, fmt.Errorf("unable to read alpine version: %w", err)
 	}
+	defer internal.CloseAndLogError(reader, locations[0].RealPath)
 
 	version, err := io.ReadAll(reader)
 	if err != nil {
@@ -111,7 +112,11 @@ func getAPKKeys(resolver file.Resolver) (map[string]string, []file.Location, err
 	}
 	for _, location := range locations {
 		basename := path.Base(location.RealPath)
+		//nolint:gocritic
 		reader, err := resolver.FileContentsByLocation(location)
+		if err != nil {
+			return nil, nil, fmt.Errorf("unable to resolve file contents by location at %s: %w", location.RealPath, err)
+		}
 		content, err := io.ReadAll(reader)
 		if err != nil {
 			return nil, nil, fmt.Errorf("unable to read apk key content at %s: %w", location.RealPath, err)

examples/create_custom_sbom/main.go

@@ -124,5 +124,4 @@ func showAlpineConfiguration(s sbom.SBOM) {
 		panic(err)
 	}
 	fmt.Println(string(meta))
-
 }

examples/select_catalogers/main.go

@@ -30,7 +30,6 @@ func main() {
 	if err := enc.Encode(sbom.Descriptor.Configuration); err != nil {
 		panic(err)
 	}
-
 }
 
 func imageReference() string {

go.mod

@@ -1,73 +1,81 @@
 module github.com/anchore/syft
 
-go 1.24.0
+go 1.24.1
 
 require (
+	github.com/BurntSushi/toml v1.5.0
 	github.com/CycloneDX/cyclonedx-go v0.9.2
-	github.com/Masterminds/semver v1.5.0
+	github.com/Masterminds/semver/v3 v3.3.1
 	github.com/Masterminds/sprig/v3 v3.3.0
+	github.com/OneOfOne/xxhash v1.2.8
 	github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d
 	github.com/acobaugh/osrelease v0.1.0
+	github.com/adrg/xdg v0.5.3
+	github.com/anchore/archiver/v3 v3.5.3-0.20241210171143-5b1d8d1c7c51
 	github.com/anchore/bubbly v0.0.0-20231115134915-def0aba654a9
-	github.com/anchore/clio v0.0.0-20241115144204-29e89f9fa837
-	github.com/anchore/fangs v0.0.0-20241014201141-b6e4b3469f10
+	github.com/anchore/clio v0.0.0-20250319180342-2cfe4b0cb716
+	github.com/anchore/fangs v0.0.0-20250319222917-446a1e748ec2
 	github.com/anchore/go-collections v0.0.0-20240216171411-9321230ce537
-	github.com/anchore/go-logger v0.0.0-20230725134548-c21dafa1ec5a
+	github.com/anchore/go-homedir v0.0.0-20250319154043-c29668562e4d
+	github.com/anchore/go-logger v0.0.0-20250318195838-07ae343dd722
 	github.com/anchore/go-macholibre v0.0.0-20220308212642-53e6d0aaf6fb
+	github.com/anchore/go-sync v0.0.0-20250326131806-4eda43a485b6
 	github.com/anchore/go-testutils v0.0.0-20200925183923-d5f45b0d3c04
 	github.com/anchore/go-version v1.2.2-0.20200701162849-18adb9c92b9b
 	github.com/anchore/packageurl-go v0.1.1-0.20250220190351-d62adb6e1115
-	github.com/anchore/stereoscope v0.0.13
+	github.com/anchore/stereoscope v0.1.4
 	github.com/anmitsu/go-shlex v0.0.0-20200514113438-38f4b401e2be
-	// we are hinting brotli to latest due to warning when installing archiver v3:
-	// go: warning: github.com/andybalholm/brotli@v1.0.1: retracted by module author: occasional panics and data corruption
 	github.com/aquasecurity/go-pep440-version v0.0.1
+	github.com/bitnami/go-version v0.0.0-20250131085805-b1f57a8634ef
+	github.com/blakesmith/ar v0.0.0-20190502131153-809d4375e1fb
 	github.com/bmatcuk/doublestar/v4 v4.8.1
-	github.com/charmbracelet/bubbles v0.20.0
-	github.com/charmbracelet/bubbletea v1.2.4
-	github.com/charmbracelet/lipgloss v1.0.0
+	github.com/charmbracelet/bubbles v0.21.0
+	github.com/charmbracelet/bubbletea v1.3.5
+	github.com/charmbracelet/lipgloss v1.1.0
 	github.com/dave/jennifer v1.7.1
 	github.com/deitch/magic v0.0.0-20230404182410-1ff89d7342da
 	github.com/distribution/reference v0.6.0
-	github.com/docker/docker v28.0.0+incompatible
 	github.com/dustin/go-humanize v1.0.1
 	github.com/elliotchance/phpserialize v1.4.0
 	github.com/facebookincubator/nvdtools v0.1.5
-	github.com/github/go-spdx/v2 v2.3.2
+	github.com/github/go-spdx/v2 v2.3.3
 	github.com/gkampitakis/go-snaps v0.5.11
 	github.com/go-git/go-billy/v5 v5.6.2
-	github.com/go-git/go-git/v5 v5.13.2
+	github.com/go-git/go-git/v5 v5.16.0
 	github.com/go-test/deep v1.1.1
-	github.com/google/go-cmp v0.6.0
+	github.com/go-viper/mapstructure/v2 v2.2.1
+	github.com/gohugoio/hashstructure v0.5.0
+	github.com/google/go-cmp v0.7.0
 	github.com/google/go-containerregistry v0.20.3
 	github.com/google/licensecheck v0.3.1
 	github.com/google/uuid v1.6.0
 	github.com/gookit/color v1.5.4
 	github.com/hashicorp/go-multierror v1.1.1
+	github.com/hashicorp/hcl/v2 v2.23.0
 	github.com/iancoleman/strcase v0.3.0
 	github.com/invopop/jsonschema v0.7.0
-	github.com/jedib0t/go-pretty/v6 v6.6.6
+	github.com/jedib0t/go-pretty/v6 v6.6.7
 	github.com/jinzhu/copier v0.4.0
 	github.com/kastenhq/goversion v0.0.0-20230811215019-93b2f8823953
 	github.com/knqyf263/go-rpmdb v0.1.1
-	github.com/microsoft/go-rustaudit v0.0.0-20220730194248-4b17361d90a5
-	github.com/mitchellh/go-homedir v1.1.0
-	github.com/mitchellh/hashstructure/v2 v2.0.2
-	github.com/mitchellh/mapstructure v1.5.0
+	github.com/magiconair/properties v1.8.10
+	github.com/mholt/archives v0.1.1
 	github.com/moby/sys/mountinfo v0.7.2
+	github.com/nix-community/go-nix v0.0.0-20250101154619-4bdde671e0a1
 	github.com/olekukonko/tablewriter v0.0.5
 	github.com/opencontainers/go-digest v1.0.0
 	github.com/pelletier/go-toml v1.9.5
 	github.com/quasilyte/go-ruleguard/dsl v0.3.22
-	github.com/saferwall/pe v1.5.6
+	github.com/rust-secure-code/go-rustaudit v0.0.0-20250226111315-e20ec32e963c
 	github.com/saintfish/chardet v0.0.0-20230101081208-5e3ef4b5456d
 	github.com/sanity-io/litter v1.5.8
 	github.com/sassoftware/go-rpmutils v0.4.0
 	// pinned to pull in 386 arch fix: https://github.com/scylladb/go-set/commit/cc7b2070d91ebf40d233207b633e28f5bd8f03a5
 	github.com/scylladb/go-set v1.0.3-0.20200225121959-cc7b2070d91e
 	github.com/sergi/go-diff v1.3.2-0.20230802210424-5b0b94c5c0d3
+	github.com/spdx/gordf v0.0.0-20201111095634-7098f93598fb
 	github.com/spdx/tools-golang v0.5.5
-	github.com/spf13/afero v1.12.0
+	github.com/spf13/afero v1.14.0
 	github.com/spf13/cobra v1.9.1
 	github.com/stretchr/testify v1.10.0
 	github.com/vbatts/go-mtree v0.5.4
@@ -77,23 +85,11 @@ require (
 	github.com/xeipuuv/gojsonschema v1.2.0
 	github.com/zyedidia/generic v1.2.2-0.20230320175451-4410d2372cb1
 	go.uber.org/goleak v1.3.0
-	golang.org/x/mod v0.23.0
-	golang.org/x/net v0.35.0
+	golang.org/x/exp v0.0.0-20250305212735-054e65f0b394
+	golang.org/x/mod v0.24.0
+	golang.org/x/net v0.40.0
 	gopkg.in/yaml.v3 v3.0.1
-	modernc.org/sqlite v1.35.0
-)
-
-require google.golang.org/genproto v0.0.0-20241118233622-e639e219e697 // indirect
-
-require (
-	github.com/BurntSushi/toml v1.4.0
-	github.com/OneOfOne/xxhash v1.2.8
-	github.com/adrg/xdg v0.5.3
-	github.com/anchore/archiver/v3 v3.5.3-0.20241210171143-5b1d8d1c7c51
-	github.com/bitnami/go-version v0.0.0-20250131085805-b1f57a8634ef
-	github.com/hashicorp/hcl/v2 v2.23.0
-	github.com/magiconair/properties v1.8.9
-	golang.org/x/exp v0.0.0-20240719175910-8a7402abbf56
+	modernc.org/sqlite v1.37.0
 )
 
 require (
@@ -102,10 +98,10 @@ require (
 	github.com/AdamKorcz/go-118-fuzz-build v0.0.0-20230306123547-8075edf89bb0 // indirect
 	github.com/DataDog/zstd v1.5.5 // indirect
 	github.com/Masterminds/goutils v1.1.1 // indirect
-	github.com/Masterminds/semver/v3 v3.3.0 // indirect
 	github.com/Microsoft/go-winio v0.6.2 // indirect
 	github.com/Microsoft/hcsshim v0.11.7 // indirect
-	github.com/ProtonMail/go-crypto v1.1.5 // indirect
+	github.com/ProtonMail/go-crypto v1.1.6 // indirect
+	github.com/STARRY-S/zip v0.2.1 // indirect
 	github.com/agext/levenshtein v1.2.1 // indirect; indirectt
 	github.com/anchore/go-struct-converter v0.0.0-20221118182256-c68fdcfa2092 // indirect
 	github.com/andybalholm/brotli v1.1.1 // indirect
@@ -115,37 +111,42 @@ require (
 	github.com/atotto/clipboard v0.1.4 // indirect
 	github.com/aymanbagabas/go-osc52/v2 v2.0.1 // indirect
 	github.com/becheran/wildmatch-go v1.0.0 // indirect
+	github.com/bodgit/plumbing v1.3.0 // indirect
+	github.com/bodgit/sevenzip v1.6.0 // indirect
+	github.com/bodgit/windows v1.0.1 // indirect
+	github.com/charmbracelet/colorprofile v0.2.3-0.20250311203215-f60798e515dc // indirect
 	github.com/charmbracelet/harmonica v0.2.0 // indirect
-	github.com/charmbracelet/x/ansi v0.4.5 // indirect
+	github.com/charmbracelet/x/ansi v0.8.0 // indirect
+	github.com/charmbracelet/x/cellbuf v0.0.13-0.20250311204145-2c3ea96c31dd // indirect
 	github.com/charmbracelet/x/term v0.2.1 // indirect
-	github.com/cloudflare/circl v1.3.8 // indirect
+	github.com/cloudflare/circl v1.6.1 // indirect
 	github.com/containerd/cgroups v1.1.0 // indirect
-	github.com/containerd/containerd v1.7.24 // indirect
-	github.com/containerd/containerd/api v1.7.19 // indirect
-	github.com/containerd/continuity v0.4.2 // indirect
+	github.com/containerd/containerd v1.7.27 // indirect
+	github.com/containerd/containerd/api v1.8.0 // indirect
+	github.com/containerd/continuity v0.4.4 // indirect
 	github.com/containerd/errdefs v0.3.0 // indirect
 	github.com/containerd/fifo v1.1.0 // indirect
 	github.com/containerd/log v0.1.0 // indirect
 	github.com/containerd/platforms v0.2.1 // indirect
 	github.com/containerd/stargz-snapshotter/estargz v0.16.3 // indirect
-	github.com/containerd/ttrpc v1.2.5 // indirect
+	github.com/containerd/ttrpc v1.2.7 // indirect
 	github.com/containerd/typeurl/v2 v2.1.1 // indirect
-	github.com/cyphar/filepath-securejoin v0.3.6 // indirect
+	github.com/cyphar/filepath-securejoin v0.4.1 // indirect
 	github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc // indirect
-	github.com/docker/cli v27.5.0+incompatible // indirect
+	github.com/docker/cli v28.1.1+incompatible // indirect
 	github.com/docker/distribution v2.8.3+incompatible // indirect
+	github.com/docker/docker v28.1.1+incompatible // indirect
 	github.com/docker/docker-credential-helpers v0.8.2 // indirect
 	github.com/docker/go-connections v0.5.0 // indirect
 	github.com/docker/go-events v0.0.0-20190806004212-e31b211e4f1c // indirect
 	github.com/docker/go-units v0.5.0 // indirect
-	github.com/dsnet/compress v0.0.2-0.20210315054119-f66993602bf5 // indirect
-	github.com/edsrzf/mmap-go v1.1.0 // indirect
+	github.com/dsnet/compress v0.0.2-0.20230904184137-39efe44ab707 // indirect
 	github.com/emirpasic/gods v1.18.1 // indirect
 	github.com/erikgeiser/coninput v0.0.0-20211004153227-1c3628e74d0f // indirect
 	github.com/felixge/fgprof v0.9.5 // indirect
 	github.com/felixge/httpsnoop v1.0.4 // indirect
-	github.com/fsnotify/fsnotify v1.7.0 // indirect
-	github.com/gabriel-vasile/mimetype v1.4.8 // indirect
+	github.com/fsnotify/fsnotify v1.8.0 // indirect
+	github.com/gabriel-vasile/mimetype v1.4.9 // indirect
 	github.com/gkampitakis/ciinfo v0.3.1 // indirect
 	github.com/gkampitakis/go-diff v1.3.2 // indirect
 	github.com/go-git/gcfg v1.5.1-0.20230307220236-3a3c6141e376 // indirect
@@ -154,17 +155,17 @@ require (
 	github.com/go-restruct/restruct v1.2.0-alpha // indirect
 	github.com/goccy/go-yaml v1.15.13 // indirect
 	github.com/gogo/protobuf v1.3.2 // indirect
-	github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da // indirect
+	github.com/golang/groupcache v0.0.0-20241129210726-2c02b8208cf8 // indirect
 	github.com/golang/snappy v0.0.4 // indirect
-	github.com/google/pprof v0.0.0-20240409012703-83162a5b38cd // indirect
+	github.com/google/pprof v0.0.0-20250317173921-a4b03ec1a45e // indirect
 	github.com/hashicorp/errwrap v1.1.0 // indirect
-	github.com/hashicorp/hcl v1.0.0 // indirect
+	github.com/hashicorp/golang-lru/v2 v2.0.7 // indirect
 	github.com/huandu/xstrings v1.5.0 // indirect
 	github.com/iancoleman/orderedmap v0.0.0-20190318233801-ac98e3ecb4b0 // indirect
 	github.com/inconshreveable/mousetrap v1.1.0 // indirect
 	github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99 // indirect
 	github.com/kevinburke/ssh_config v1.2.0 // indirect
-	github.com/klauspost/compress v1.17.11 // indirect
+	github.com/klauspost/compress v1.18.0 // indirect
 	github.com/klauspost/pgzip v1.2.6 // indirect
 	github.com/kr/pretty v0.3.1 // indirect
 	github.com/kr/text v0.2.0 // indirect
@@ -176,47 +177,49 @@ require (
 	github.com/mattn/go-localereader v0.0.2-0.20220822084749-2491eb6c1c75 // indirect
 	github.com/mattn/go-runewidth v0.0.16 // indirect
 	github.com/mgutz/ansi v0.0.0-20200706080929-d51e80ef957d // indirect
+	github.com/minio/minlz v1.0.0 // indirect
 	github.com/mitchellh/copystructure v1.2.0 // indirect
-	github.com/mitchellh/go-wordwrap v0.0.0-20150314170334-ad45545899c7 // indirect
+	github.com/mitchellh/go-homedir v1.1.0 // indirect
+	github.com/mitchellh/go-wordwrap v1.0.1 // indirect
 	github.com/mitchellh/reflectwalk v1.0.2 // indirect
 	github.com/moby/docker-image-spec v1.3.1 // indirect
 	github.com/moby/locker v1.0.1 // indirect
-	github.com/moby/sys/sequential v0.5.0 // indirect
+	github.com/moby/sys/sequential v0.6.0 // indirect
 	github.com/moby/sys/signal v0.7.0 // indirect
 	github.com/moby/sys/user v0.3.0 // indirect
 	github.com/moby/sys/userns v0.1.0 // indirect
 	github.com/muesli/ansi v0.0.0-20230316100256-276c6243b2f6 // indirect
 	github.com/muesli/cancelreader v0.2.2 // indirect
-	github.com/muesli/termenv v0.15.2 // indirect
+	github.com/muesli/termenv v0.16.0 // indirect
 	github.com/ncruces/go-strftime v0.1.9 // indirect
 	github.com/nwaples/rardecode v1.1.3 // indirect
-	github.com/opencontainers/image-spec v1.1.0 // indirect
+	github.com/nwaples/rardecode/v2 v2.1.0 // indirect
+	github.com/opencontainers/image-spec v1.1.1 // indirect
 	github.com/opencontainers/runtime-spec v1.1.0 // indirect
 	github.com/opencontainers/selinux v1.11.0 // indirect
 	github.com/pborman/indent v1.2.1 // indirect
-	github.com/pelletier/go-toml/v2 v2.2.2 // indirect
-	github.com/pierrec/lz4/v4 v4.1.21 // indirect
+	github.com/pelletier/go-toml/v2 v2.2.3 // indirect
+	github.com/pierrec/lz4/v4 v4.1.22 // indirect
 	github.com/pjbgf/sha1cd v0.3.2 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
 	github.com/pkg/profile v1.7.0 // indirect
 	github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2 // indirect
 	github.com/remyoudompheng/bigfft v0.0.0-20230129092748-24d4a6f8daec // indirect
 	github.com/rivo/uniseg v0.4.7 // indirect
-	github.com/rogpeppe/go-internal v1.13.1 // indirect
-	github.com/sagikazarmark/locafero v0.4.0 // indirect
-	github.com/sagikazarmark/slog-shim v0.1.0 // indirect
+	github.com/rogpeppe/go-internal v1.14.1 // indirect
+	github.com/sagikazarmark/locafero v0.7.0 // indirect
 	github.com/sahilm/fuzzy v0.1.1 // indirect
-	github.com/secDre4mer/pkcs7 v0.0.0-20240322103146-665324a4461d // indirect
 	github.com/shopspring/decimal v1.4.0 // indirect
 	github.com/sirupsen/logrus v1.9.3 // indirect
-	github.com/skeema/knownhosts v1.3.0 // indirect
+	github.com/skeema/knownhosts v1.3.1 // indirect
+	github.com/sorairolake/lzip-go v0.3.5 // indirect
 	github.com/sourcegraph/conc v0.3.0 // indirect
-	github.com/spf13/cast v1.7.0 // indirect
+	github.com/spf13/cast v1.7.1 // indirect
 	github.com/spf13/pflag v1.0.6 // indirect
-	github.com/spf13/viper v1.19.0 // indirect
+	github.com/spf13/viper v1.20.0 // indirect
 	github.com/subosito/gotenv v1.6.0 // indirect
-	github.com/sylabs/sif/v2 v2.20.2 // indirect
-	github.com/sylabs/squashfs v1.0.4 // indirect
+	github.com/sylabs/sif/v2 v2.21.1 // indirect
+	github.com/sylabs/squashfs v1.0.6 // indirect
 	github.com/therootcompany/xz v1.0.1 // indirect
 	github.com/tidwall/gjson v1.18.0 // indirect
 	github.com/tidwall/match v1.1.1 // indirect
@@ -238,21 +241,22 @@ require (
 	go.opentelemetry.io/otel/trace v1.33.0 // indirect
 	go.uber.org/atomic v1.9.0 // indirect
 	go.uber.org/multierr v1.9.0 // indirect
-	golang.org/x/crypto v0.33.0 // indirect
-	golang.org/x/sync v0.11.0 // indirect
-	golang.org/x/sys v0.30.0 // indirect
-	golang.org/x/term v0.29.0 // indirect
-	golang.org/x/text v0.22.0 // indirect
-	golang.org/x/tools v0.29.0 // indirect
+	go4.org v0.0.0-20230225012048-214862532bf5 // indirect
+	golang.org/x/crypto v0.38.0 // indirect
+	golang.org/x/sync v0.14.0 // indirect
+	golang.org/x/sys v0.33.0 // indirect
+	golang.org/x/term v0.32.0 // indirect
+	golang.org/x/text v0.25.0 // indirect
+	golang.org/x/tools v0.31.0 // indirect
 	golang.org/x/xerrors v0.0.0-20231012003039-104605ab7028 // indirect
+	google.golang.org/genproto v0.0.0-20241118233622-e639e219e697 // indirect
 	google.golang.org/genproto/googleapis/rpc v0.0.0-20241223144023-3abc09e42ca8 // indirect
 	google.golang.org/grpc v1.67.3 // indirect
-	google.golang.org/protobuf v1.36.3 // indirect
-	gopkg.in/ini.v1 v1.67.0 // indirect
+	google.golang.org/protobuf v1.36.4 // indirect
 	gopkg.in/warnings.v0 v0.1.2 // indirect
-	modernc.org/libc v1.61.13 // indirect
+	modernc.org/libc v1.62.1 // indirect
 	modernc.org/mathutil v1.7.1 // indirect
-	modernc.org/memory v1.8.2 // indirect
+	modernc.org/memory v1.9.1 // indirect
 )
 
 retract (

go.sum

@@ -56,8 +56,8 @@ github.com/Azure/go-ansiterm v0.0.0-20230124172434-306776ec8161 h1:L/gRVlceqvL25
 github.com/Azure/go-ansiterm v0.0.0-20230124172434-306776ec8161/go.mod h1:xomTg63KZ2rFqZQzSB4Vz2SUXa1BpHTVz9L5PTmPC4E=
 github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU=
 github.com/BurntSushi/toml v0.4.1/go.mod h1:CxXYINrC8qIiEnFrOxCa7Jy5BFHlXnUU2pbicEuybxQ=
-github.com/BurntSushi/toml v1.4.0 h1:kuoIxZQy2WRRk1pttg9asf+WVv6tWQuBNVmK8+nqPr0=
-github.com/BurntSushi/toml v1.4.0/go.mod h1:ukJfTF/6rtPPRCnwkur4qwRxa8vTRFBF0uk2lLoLwho=
+github.com/BurntSushi/toml v1.5.0 h1:W5quZX/G/csjUnuI8SUYlsHs9M38FC7znL0lIO+DvMg=
+github.com/BurntSushi/toml v1.5.0/go.mod h1:ukJfTF/6rtPPRCnwkur4qwRxa8vTRFBF0uk2lLoLwho=
 github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=
 github.com/CycloneDX/cyclonedx-go v0.9.2 h1:688QHn2X/5nRezKe2ueIVCt+NRqf7fl3AVQk+vaFcIo=
 github.com/CycloneDX/cyclonedx-go v0.9.2/go.mod h1:vcK6pKgO1WanCdd61qx4bFnSsDJQ6SbM2ZuMIgq86Jg=
@@ -66,10 +66,8 @@ github.com/DataDog/zstd v1.5.5 h1:oWf5W7GtOLgp6bciQYDmhHHjdhYkALu6S/5Ni9ZgSvQ=
 github.com/DataDog/zstd v1.5.5/go.mod h1:g4AWEaM3yOg3HYfnJ3YIawPnVdXJh9QME85blwSAmyw=
 github.com/Masterminds/goutils v1.1.1 h1:5nUrii3FMTL5diU80unEVvNevw1nH4+ZV4DSLVJLSYI=
 github.com/Masterminds/goutils v1.1.1/go.mod h1:8cTjp+g8YejhMuvIA5y2vz3BpJxksy863GQaJW2MFNU=
-github.com/Masterminds/semver v1.5.0 h1:H65muMkzWKEuNDnfl9d70GUjFniHKHRbFPGBuZ3QEww=
-github.com/Masterminds/semver v1.5.0/go.mod h1:MB6lktGJrhw8PrUyiEoblNEGEQ+RzHPF078ddwwvV3Y=
-github.com/Masterminds/semver/v3 v3.3.0 h1:B8LGeaivUe71a5qox1ICM/JLl0NqZSW5CHyL+hmvYS0=
-github.com/Masterminds/semver/v3 v3.3.0/go.mod h1:4V+yj/TJE1HU9XfppCwVMZq3I84lprf4nC11bSS5beM=
+github.com/Masterminds/semver/v3 v3.3.1 h1:QtNSWtVZ3nBfk8mAOu/B6v7FMJ+NHTIgUPi7rj+4nv4=
+github.com/Masterminds/semver/v3 v3.3.1/go.mod h1:4V+yj/TJE1HU9XfppCwVMZq3I84lprf4nC11bSS5beM=
 github.com/Masterminds/sprig/v3 v3.3.0 h1:mQh0Yrg1XPo6vjYXgtf5OtijNAKJRNcTdOOGZe3tPhs=
 github.com/Masterminds/sprig/v3 v3.3.0/go.mod h1:Zy1iXRYNqNLUolqCpL4uhk6SHUMAOSCzdgBfDb35Lz0=
 github.com/Microsoft/go-winio v0.5.2/go.mod h1:WpS1mjBmmwHBEWmogvA2mj8546UReBk4v8QkMxJ6pZY=
@@ -80,8 +78,10 @@ github.com/Microsoft/hcsshim v0.11.7/go.mod h1:MV8xMfmECjl5HdO7U/3/hFVnkmSBjAjmA
 github.com/OneOfOne/xxhash v1.2.2/go.mod h1:HSdplMjZKSmBqAxg5vPj2TmRDmfkzw+cTzAElWljhcU=
 github.com/OneOfOne/xxhash v1.2.8 h1:31czK/TI9sNkxIKfaUfGlU47BAxQ0ztGgd9vPyqimf8=
 github.com/OneOfOne/xxhash v1.2.8/go.mod h1:eZbhyaAYD41SGSSsnmcpxVoRiQ/MPUTjUdIIOT9Um7Q=
-github.com/ProtonMail/go-crypto v1.1.5 h1:eoAQfK2dwL+tFSFpr7TbOaPNUbPiJj4fLYwwGE1FQO4=
-github.com/ProtonMail/go-crypto v1.1.5/go.mod h1:rA3QumHc/FZ8pAHreoekgiAbzpNsfQAosU5td4SnOrE=
+github.com/ProtonMail/go-crypto v1.1.6 h1:ZcV+Ropw6Qn0AX9brlQLAUXfqLBc7Bl+f/DmNxpLfdw=
+github.com/ProtonMail/go-crypto v1.1.6/go.mod h1:rA3QumHc/FZ8pAHreoekgiAbzpNsfQAosU5td4SnOrE=
+github.com/STARRY-S/zip v0.2.1 h1:pWBd4tuSGm3wtpoqRZZ2EAwOmcHK6XFf7bU9qcJXyFg=
+github.com/STARRY-S/zip v0.2.1/go.mod h1:xNvshLODWtC4EJ702g7cTYn13G53o1+X9BWnPFpcWV4=
 github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d h1:licZJFw2RwpHMqeKTCYkitsPqHNxTmd4SNR5r94FGM8=
 github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d/go.mod h1:asat636LX7Bqt5lYEZ27JNDcqxfjdBQuJ/MM4CN/Lzo=
 github.com/acobaugh/osrelease v0.1.0 h1:Yb59HQDGGNhCj4suHaFQQfBps5wyoKLSSX/J/+UifRE=
@@ -98,26 +98,30 @@ github.com/anchore/archiver/v3 v3.5.3-0.20241210171143-5b1d8d1c7c51 h1:yhk+P8lF3
 github.com/anchore/archiver/v3 v3.5.3-0.20241210171143-5b1d8d1c7c51/go.mod h1:nwuGSd7aZp0rtYt79YggCGafz1RYsclE7pi3fhLwvuw=
 github.com/anchore/bubbly v0.0.0-20231115134915-def0aba654a9 h1:p0ZIe0htYOX284Y4axJaGBvXHU0VCCzLN5Wf5XbKStU=
 github.com/anchore/bubbly v0.0.0-20231115134915-def0aba654a9/go.mod h1:3ZsFB9tzW3vl4gEiUeuSOMDnwroWxIxJelOOHUp8dSw=
-github.com/anchore/clio v0.0.0-20241115144204-29e89f9fa837 h1:bIG3WsfosZsJ5LMC7PB9J/ekFM3a0j0ZEDvN3ID6GTI=
-github.com/anchore/clio v0.0.0-20241115144204-29e89f9fa837/go.mod h1:tRQVKkjYeejrh9AdM0s1esbwtMU7rdHAHSQWkv4qskE=
-github.com/anchore/fangs v0.0.0-20241014201141-b6e4b3469f10 h1:w+HibE+e/heP6ysADh7sWxg5LhYdVqrpB1A4Hmgjyx8=
-github.com/anchore/fangs v0.0.0-20241014201141-b6e4b3469f10/go.mod h1:s0L1//Sxn6Rq0Dcxx+dmT/RRmD9HhsaJjJkPUJHLJLM=
+github.com/anchore/clio v0.0.0-20250319180342-2cfe4b0cb716 h1:2sIdYJlQESEnyk3Y0WD2vXWW5eD2iMz9Ev8fj1Z8LNA=
+github.com/anchore/clio v0.0.0-20250319180342-2cfe4b0cb716/go.mod h1:Utb9i4kwiCWvqAIxZaJeMIXFO9uOgQXlvH2BfbfO/zI=
+github.com/anchore/fangs v0.0.0-20250319222917-446a1e748ec2 h1:GC2QaO0YsmjpsZ4rtVKv9DnproIxqqn+qkskpc+i8MA=
+github.com/anchore/fangs v0.0.0-20250319222917-446a1e748ec2/go.mod h1:XUbUECwVKuD3qYRUj+QZIOHjyyXua2gFmVjKA40iHXA=
 github.com/anchore/go-collections v0.0.0-20240216171411-9321230ce537 h1:GjNGuwK5jWjJMyVppBjYS54eOiiSNv4Ba869k4wh72Q=
 github.com/anchore/go-collections v0.0.0-20240216171411-9321230ce537/go.mod h1:1aiktV46ATCkuVg0O573ZrH56BUawTECPETbZyBcqT8=
-github.com/anchore/go-logger v0.0.0-20230725134548-c21dafa1ec5a h1:nJ2G8zWKASyVClGVgG7sfM5mwoZlZ2zYpIzN2OhjWkw=
-github.com/anchore/go-logger v0.0.0-20230725134548-c21dafa1ec5a/go.mod h1:ubLFmlsv8/DFUQrZwY5syT5/8Er3ugSr4rDFwHsE3hg=
+github.com/anchore/go-homedir v0.0.0-20250319154043-c29668562e4d h1:gT69osH9AsdpOfqxbRwtxcNnSZ1zg4aKy2BevO3ZBdc=
+github.com/anchore/go-homedir v0.0.0-20250319154043-c29668562e4d/go.mod h1:PhSnuFYknwPZkOWKB1jXBNToChBA+l0FjwOxtViIc50=
+github.com/anchore/go-logger v0.0.0-20250318195838-07ae343dd722 h1:2SqmFgE7h+Ql4VyBzhjLkRF/3gDrcpUBj8LjvvO6OOM=
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@@ -239,12 +262,12 @@ github.com/deitch/magic v0.0.0-20230404182410-1ff89d7342da/go.mod h1:B3tI9iGHi4i
 github.com/dgrijalva/jwt-go/v4 v4.0.0-preview1/go.mod h1:+hnT3ywWDTAFrW5aE+u2Sa/wT555ZqwoCS+pk3p6ry4=
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-github.com/docker/cli v27.5.0+incompatible h1:aMphQkcGtpHixwwhAXJT1rrK/detk2JIvDaFkLctbGM=
-github.com/docker/cli v27.5.0+incompatible/go.mod h1:JLrzqnKDaYBop7H2jaqPtU4hHvMKP+vjCwu2uszcLI8=
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-github.com/docker/docker v28.0.0+incompatible h1:Olh0KS820sJ7nPsBKChVhk5pzqcwDR15fumfAd/p9hM=
-github.com/docker/docker v28.0.0+incompatible/go.mod h1:eEKB0N0r5NX/I1kEveEz05bcu8tLC/8azJZsviup8Sk=
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@@ -253,15 +276,13 @@ github.com/docker/go-events v0.0.0-20190806004212-e31b211e4f1c h1:+pKlWGMw7gf6bQ
 github.com/docker/go-events v0.0.0-20190806004212-e31b211e4f1c/go.mod h1:Uw6UezgYA44ePAFQYUehOuCzmy5zmg/+nl2ZfMWGkpA=
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-github.com/dsnet/compress v0.0.2-0.20210315054119-f66993602bf5/go.mod h1:qssHWj60/X5sZFNxpG4HBPDHVqxNm4DfnCKgrbZOT+s=
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@@ -295,13 +316,13 @@ github.com/felixge/httpsnoop v1.0.4/go.mod h1:m8KPJKqk1gH5J9DgRY2ASl2lWCfGKXixSw
 github.com/frankban/quicktest v1.14.6 h1:7Xjx+VpznH+oBnejlPUj8oUpdxnVs4f8XU8WnHkI4W8=
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-github.com/fsnotify/fsnotify v1.7.0/go.mod h1:40Bi/Hjc2AVfZrqy+aj+yEI+/bRxZnMJyTJwOpGvigM=
-github.com/gabriel-vasile/mimetype v1.4.8 h1:FfZ3gj38NjllZIeJAmMhr+qKL8Wu+nOoI3GqacKw1NM=
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-github.com/github/go-spdx/v2 v2.3.2/go.mod h1:2ZxKsOhvBp+OYBDlsGnUMcchLeo2mrpEBn2L1C+U3IQ=
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@@ -318,8 +339,8 @@ github.com/go-git/go-billy/v5 v5.6.2 h1:6Q86EsPXMa7c3YZ3aLAQsMA0VlWmy43r6FHqa/UN
 github.com/go-git/go-billy/v5 v5.6.2/go.mod h1:rcFC2rAsp/erv7CMz9GczHcuD0D32fWzH+MJAU+jaUU=
 github.com/go-git/go-git-fixtures/v4 v4.3.2-0.20231010084843-55a94097c399 h1:eMje31YglSBqCdIqdhKBW8lokaMrL3uTkpGYlE2OOT4=
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-github.com/go-git/go-git/v5 v5.13.2 h1:7O7xvsK7K+rZPKW6AQR1YyNhfywkv7B8/FsP3ki6Zv0=
-github.com/go-git/go-git/v5 v5.13.2/go.mod h1:hWdW5P4YZRjmpGHwRH2v3zkWcNl6HeXaXQEMGb3NJ9A=
+github.com/go-git/go-git/v5 v5.16.0 h1:k3kuOEpkc0DeY7xlL6NaaNg39xdgQbtH5mwCafHO9AQ=
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 github.com/go-gl/glfw v0.0.0-20190409004039-e6da0acd62b1/go.mod h1:vR7hzQXu2zJy9AVAgeJqvqgH9Q5CA+iKCZ2gyEVpxRU=
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@@ -338,6 +359,8 @@ github.com/go-sql-driver/mysql v1.6.0/go.mod h1:DCzpHaOWr8IXmIStZouvnhqoel9Qv2LB
 github.com/go-stack/stack v1.8.0/go.mod h1:v0f6uXyyMGvRgIKkXu+yp6POWl0qKG85gN/melR3HDY=
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+github.com/go-viper/mapstructure/v2 v2.2.1 h1:ZAaOCxANMuZx5RCeg0mBdEZk7DZasvvZIxtHqx8aGss=
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@@ -347,12 +370,15 @@ github.com/godbus/dbus/v5 v5.0.4/go.mod h1:xhWf0FNVPg57R7Z0UbKHbJfkEywrmjJnf7w5x
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@@ -397,8 +423,9 @@ github.com/google/go-cmp v0.5.4/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/
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@@ -424,8 +451,8 @@ github.com/google/pprof v0.0.0-20210609004039-a478d1d731e9/go.mod h1:kpwsk12EmLe
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@@ -467,7 +494,8 @@ github.com/hashicorp/go-uuid v1.0.1/go.mod h1:6SBZvOh/SIDV7/2o3Jml5SYk/TvGqwFJ/b
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@@ -692,17 +726,16 @@ github.com/rivo/uniseg v0.4.7/go.mod h1:FN3SvrM+Zdj16jyLfmOkMNblXMcoc8DfTHruCPUc
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@@ -716,8 +749,6 @@ github.com/scylladb/go-set v1.0.3-0.20200225121959-cc7b2070d91e/go.mod h1:DkpGd7
 github.com/sean-/seed v0.0.0-20170313163322-e2103e2c3529/go.mod h1:DxrIzT+xaE7yg65j358z/aeFdxmN0P9QXhEzd20vsDc=
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@@ -729,21 +760,24 @@ github.com/sirupsen/logrus v1.4.2/go.mod h1:tLMulIdttU9McNUspp0xgXVQah82FyeX6Mwd
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@@ -752,8 +786,8 @@ github.com/spf13/pflag v1.0.5/go.mod h1:McXfInJRrz4CZXVZOBLb0bTZqETkiAhM9Iw0y3An
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@@ -778,10 +812,10 @@ github.com/stretchr/testify v1.10.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf
 github.com/subosito/gotenv v1.2.0/go.mod h1:N0PQaV/YGNqwC0u51sEeR/aUtSLEXKX9iv69rRypqCw=
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@@ -877,6 +911,8 @@ go.uber.org/multierr v1.6.0/go.mod h1:cdWPpRnG4AhwMwsgIHip0KRBQjJy5kYEpYjJxpXp9i
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@@ -889,8 +925,8 @@ golang.org/x/crypto v0.0.0-20200622213623-75b288015ac9/go.mod h1:LzIPMQfyMNhhGPh
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-golang.org/x/crypto v0.33.0/go.mod h1:bVdXmD7IV/4GdElGPozy6U7lWdRXA4qyRVGJV57uQ5M=
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@@ -901,8 +937,8 @@ golang.org/x/exp v0.0.0-20191227195350-da58074b4299/go.mod h1:2RIsYlXP63K8oxa1u0
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-golang.org/x/exp v0.0.0-20240719175910-8a7402abbf56 h1:2dVuKD2vS7b0QIHQbpyTISPd0LeHDbnYEryqj5Q1ug8=
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@@ -930,8 +966,8 @@ golang.org/x/mod v0.4.1/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
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@@ -975,8 +1011,9 @@ golang.org/x/net v0.0.0-20210503060351-7fd8e65b6420/go.mod h1:9nx3DQGgdP8bBQD5qx
 golang.org/x/net v0.0.0-20210813160813-60bc85c4be6d/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y=
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-golang.org/x/net v0.35.0/go.mod h1:EglIi67kWsHKlRzzVMUD93VMSWGFOMSZgxFjparz1Qk=
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@@ -1006,8 +1043,8 @@ golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJ
 golang.org/x/sync v0.0.0-20201207232520-09787c993a3a/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
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@@ -1076,19 +1113,20 @@ golang.org/x/sys v0.0.0-20211007075335-d3039528d8ac/go.mod h1:oPkhp1MJrh7nUepCBc
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@@ -1099,13 +1137,13 @@ golang.org/x/text v0.3.5/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
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@@ -1161,8 +1199,8 @@ golang.org/x/tools v0.1.3/go.mod h1:o0xws9oXOQQZyjljx8fwUC0k7L1pTE6eaCbjGeHmOkk=
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@@ -1273,8 +1311,8 @@ google.golang.org/genproto v0.0.0-20211206160659-862468c7d6e0/go.mod h1:5CzLGKJ6
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@@ -1320,8 +1358,8 @@ google.golang.org/protobuf v1.25.0/go.mod h1:9JNX74DMeImyA3h4bdi1ymwjUzf21/xIlba
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-google.golang.org/protobuf v1.36.3 h1:82DV7MYdb8anAVi3qge1wSnMDrnKK7ebr+I0hHRN1BU=
-google.golang.org/protobuf v1.36.3/go.mod h1:9fA7Ob0pmnwhb644+1+CVWFRbNajQ6iRojtC/QF5bRE=
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@@ -1330,8 +1368,6 @@ gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c h1:Hei/4ADfdWqJk1ZMxUNpqntN
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@@ -1354,26 +1390,26 @@ honnef.co/go/tools v0.0.0-20190523083050-ea95bdfd59fc/go.mod h1:rf3lG4BRIbNafJWh
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-modernc.org/cc/v4 v4.24.4 h1:TFkx1s6dCkQpd6dKurBNmpo+G8Zl4Sq/ztJ+2+DEsh0=
-modernc.org/cc/v4 v4.24.4/go.mod h1:uVtb5OGqUKpoLWhqwNQo/8LwvoiEBLvZXIQ/SmO6mL0=
-modernc.org/ccgo/v4 v4.23.16 h1:Z2N+kk38b7SfySC1ZkpGLN2vthNJP1+ZzGZIlH7uBxo=
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+modernc.org/cc/v4 v4.25.2/go.mod h1:uVtb5OGqUKpoLWhqwNQo/8LwvoiEBLvZXIQ/SmO6mL0=
+modernc.org/ccgo/v4 v4.25.1 h1:TFSzPrAGmDsdnhT9X2UrcPMI3N/mJ9/X9ykKXwLhDsU=
+modernc.org/ccgo/v4 v4.25.1/go.mod h1:njjuAYiPflywOOrm3B7kCB444ONP5pAVr8PIEoE0uDw=
 modernc.org/fileutil v1.3.0 h1:gQ5SIzK3H9kdfai/5x41oQiKValumqNTDXMvKo62HvE=
 modernc.org/fileutil v1.3.0/go.mod h1:XatxS8fZi3pS8/hKG2GH/ArUogfxjpEKs3Ku3aK4JyQ=
-modernc.org/gc/v2 v2.6.3 h1:aJVhcqAte49LF+mGveZ5KPlsp4tdGdAOT4sipJXADjw=
-modernc.org/gc/v2 v2.6.3/go.mod h1:YgIahr1ypgfe7chRuJi2gD7DBQiKSLMPgBQe9oIiito=
-modernc.org/libc v1.61.13 h1:3LRd6ZO1ezsFiX1y+bHd1ipyEHIJKvuprv0sLTBwLW8=
-modernc.org/libc v1.61.13/go.mod h1:8F/uJWL/3nNil0Lgt1Dpz+GgkApWh04N3el3hxJcA6E=
+modernc.org/gc/v2 v2.6.5 h1:nyqdV8q46KvTpZlsw66kWqwXRHdjIlJOhG6kxiV/9xI=
+modernc.org/gc/v2 v2.6.5/go.mod h1:YgIahr1ypgfe7chRuJi2gD7DBQiKSLMPgBQe9oIiito=
+modernc.org/libc v1.62.1 h1:s0+fv5E3FymN8eJVmnk0llBe6rOxCu/DEU+XygRbS8s=
+modernc.org/libc v1.62.1/go.mod h1:iXhATfJQLjG3NWy56a6WVU73lWOcdYVxsvwCgoPljuo=
 modernc.org/mathutil v1.7.1 h1:GCZVGXdaN8gTqB1Mf/usp1Y/hSqgI2vAGGP4jZMCxOU=
 modernc.org/mathutil v1.7.1/go.mod h1:4p5IwJITfppl0G4sUEDtCr4DthTaT47/N3aT6MhfgJg=
-modernc.org/memory v1.8.2 h1:cL9L4bcoAObu4NkxOlKWBWtNHIsnnACGF/TbqQ6sbcI=
-modernc.org/memory v1.8.2/go.mod h1:ZbjSvMO5NQ1A2i3bWeDiVMxIorXwdClKE/0SZ+BMotU=
+modernc.org/memory v1.9.1 h1:V/Z1solwAVmMW1yttq3nDdZPJqV1rM05Ccq6KMSZ34g=
+modernc.org/memory v1.9.1/go.mod h1:/JP4VbVC+K5sU2wZi9bHoq2MAkCnrt2r98UGeSK7Mjw=
 modernc.org/opt v0.1.4 h1:2kNGMRiUjrp4LcaPuLY2PzUfqM/w9N23quVwhKt5Qm8=
 modernc.org/opt v0.1.4/go.mod h1:03fq9lsNfvkYSfxrfUhZCWPk1lm4cq4N+Bh//bEtgns=
 modernc.org/sortutil v1.2.1 h1:+xyoGf15mM3NMlPDnFqrteY07klSFxLElE2PVuWIJ7w=
 modernc.org/sortutil v1.2.1/go.mod h1:7ZI3a3REbai7gzCLcotuw9AC4VZVpYMjDzETGsSMqJE=
-modernc.org/sqlite v1.35.0 h1:yQps4fegMnZFdphtzlfQTCNBWtS0CZv48pRpW3RFHRw=
-modernc.org/sqlite v1.35.0/go.mod h1:9cr2sicr7jIaWTBKQmAxQLfBv9LL0su4ZTEV+utt3ic=
+modernc.org/sqlite v1.37.0 h1:s1TMe7T3Q3ovQiK2Ouz4Jwh7dw4ZDqbebSDTlSJdfjI=
+modernc.org/sqlite v1.37.0/go.mod h1:5YiWv+YviqGMuGw4V+PNplcyaJ5v+vQd7TQOgkACoJM=
 modernc.org/strutil v1.2.1 h1:UneZBkQA+DX2Rp35KcM69cSsNES9ly8mQWD71HKlOA0=
 modernc.org/strutil v1.2.1/go.mod h1:EHkiggD70koQxjVdSBM3JKM7k6L0FbGE5eymy9i3B9A=
 modernc.org/token v1.1.0 h1:Xl7Ap9dKaEs5kLoOQeQmPWevfnk/DM5qcLcYlA8ys6Y=

internal/cache/hash_type.go

@@ -4,7 +4,7 @@ import (
 	"fmt"
 	"reflect"
 
-	"github.com/mitchellh/hashstructure/v2"
+	"github.com/gohugoio/hashstructure"
 )
 
 // hashType returns a stable hash based on the structure of the type
@@ -12,7 +12,7 @@ func hashType[T any]() string {
 	// get the base type and hash an empty instance
 	var t T
 	empty := emptyValue(reflect.TypeOf(t)).Interface()
-	hash, err := hashstructure.Hash(empty, hashstructure.FormatV2, &hashstructure.HashOptions{
+	hash, err := hashstructure.Hash(empty, &hashstructure.HashOptions{
 		ZeroNil:         false,
 		IgnoreZeroValue: false,
 		SlicesAsSets:    false,

internal/cache/hash_type_test.go

@@ -4,7 +4,7 @@ import (
 	"fmt"
 	"testing"
 
-	"github.com/mitchellh/hashstructure/v2"
+	"github.com/gohugoio/hashstructure"
 	"github.com/stretchr/testify/require"
 )
 
@@ -99,7 +99,7 @@ func Test_hashType(t *testing.T) {
 
 func Test_hashIgnores(t *testing.T) {
 	hash := func(v any) string {
-		v, err := hashstructure.Hash(v, hashstructure.FormatV2, &hashstructure.HashOptions{})
+		v, err := hashstructure.Hash(v, &hashstructure.HashOptions{})
 		require.NoError(t, err)
 		return fmt.Sprintf("%x", v)
 	}

internal/cmptest/common_options.go

@@ -8,11 +8,15 @@ import (
 	"github.com/anchore/syft/syft/pkg"
 )
 
-func DefaultCommonOptions() []cmp.Option {
-	return CommonOptions(nil, nil)
+func DefaultOptions() []cmp.Option {
+	return BuildOptions(nil, nil)
 }
 
-func CommonOptions(licenseCmp LicenseComparer, locationCmp LocationComparer) []cmp.Option {
+func DefaultIgnoreLocationLayerOptions() []cmp.Option {
+	return BuildOptions(LicenseComparerWithoutLocationLayer, LocationComparerWithoutLayer)
+}
+
+func BuildOptions(licenseCmp LicenseComparer, locationCmp LocationComparer) []cmp.Option {
 	if licenseCmp == nil {
 		licenseCmp = DefaultLicenseComparer
 	}
@@ -25,47 +29,9 @@ func CommonOptions(licenseCmp LicenseComparer, locationCmp LocationComparer) []c
 		cmpopts.IgnoreFields(pkg.Package{}, "id"), // note: ID is not deterministic for test purposes
 		cmpopts.SortSlices(pkg.Less),
 		cmpopts.SortSlices(DefaultRelationshipComparer),
-		cmp.Comparer(
-			func(x, y file.LocationSet) bool {
-				xs := x.ToSlice()
-				ys := y.ToSlice()
-
-				if len(xs) != len(ys) {
-					return false
-				}
-				for i, xe := range xs {
-					ye := ys[i]
-					if !locationCmp(xe, ye) {
-						return false
-					}
-				}
-
-				return true
-			},
-		),
-		cmp.Comparer(
-			func(x, y pkg.LicenseSet) bool {
-				xs := x.ToSlice()
-				ys := y.ToSlice()
-
-				if len(xs) != len(ys) {
-					return false
-				}
-				for i, xe := range xs {
-					ye := ys[i]
-					if !licenseCmp(xe, ye) {
-						return false
-					}
-				}
-
-				return true
-			},
-		),
-		cmp.Comparer(
-			locationCmp,
-		),
-		cmp.Comparer(
-			licenseCmp,
-		),
+		cmp.Comparer(buildSetComparer[file.Location, file.LocationSet](locationCmp)),
+		cmp.Comparer(buildSetComparer[pkg.License, pkg.LicenseSet](licenseCmp)),
+		cmp.Comparer(locationCmp),
+		cmp.Comparer(licenseCmp),
 	}
 }

internal/cmptest/license.go

@@ -10,20 +10,17 @@ import (
 type LicenseComparer func(x, y pkg.License) bool
 
 func DefaultLicenseComparer(x, y pkg.License) bool {
-	return cmp.Equal(x, y, cmp.Comparer(DefaultLocationComparer), cmp.Comparer(
-		func(x, y file.LocationSet) bool {
-			xs := x.ToSlice()
-			ys := y.ToSlice()
-			if len(xs) != len(ys) {
-				return false
-			}
-			for i, xe := range xs {
-				ye := ys[i]
-				if !DefaultLocationComparer(xe, ye) {
-					return false
-				}
-			}
-			return true
-		},
-	))
+	return cmp.Equal(
+		x, y,
+		cmp.Comparer(DefaultLocationComparer),
+		cmp.Comparer(buildSetComparer[file.Location, file.LocationSet](DefaultLocationComparer)),
+	)
+}
+
+func LicenseComparerWithoutLocationLayer(x, y pkg.License) bool {
+	return cmp.Equal(
+		x, y,
+		cmp.Comparer(LocationComparerWithoutLayer),
+		cmp.Comparer(buildSetComparer[file.Location, file.LocationSet](LocationComparerWithoutLayer)),
+	)
 }

internal/cmptest/location.go

@@ -11,3 +11,7 @@ type LocationComparer func(x, y file.Location) bool
 func DefaultLocationComparer(x, y file.Location) bool {
 	return cmp.Equal(x.Coordinates, y.Coordinates) && cmp.Equal(x.AccessPath, y.AccessPath)
 }
+
+func LocationComparerWithoutLayer(x, y file.Location) bool {
+	return cmp.Equal(x.RealPath, y.RealPath) && cmp.Equal(x.AccessPath, y.AccessPath)
+}

internal/cmptest/set.go

@@ -0,0 +1,24 @@
+package cmptest
+
+type slicer[T any] interface {
+	ToSlice() []T
+}
+
+func buildSetComparer[T any, S slicer[T]](l func(x, y T) bool) func(x, y S) bool {
+	return func(x, y S) bool {
+		xs := x.ToSlice()
+		ys := y.ToSlice()
+
+		if len(xs) != len(ys) {
+			return false
+		}
+		for i, xe := range xs {
+			ye := ys[i]
+			if !l(xe, ye) {
+				return false
+			}
+		}
+
+		return true
+	}
+}

internal/constants.go

@@ -3,5 +3,5 @@ package internal
 const (
 	// JSONSchemaVersion is the current schema version output by the JSON encoder
 	// This is roughly following the "SchemaVer" guidelines for versioning the JSON schema. Please see schema/json/README.md for details on how to increment.
-	JSONSchemaVersion = "16.0.22"
+	JSONSchemaVersion = "16.0.28"
 )

internal/err_helper.go

@@ -4,6 +4,7 @@ import (
 	"errors"
 	"fmt"
 	"io"
+	"io/fs"
 	"os"
 
 	"github.com/anchore/syft/internal/log"
@@ -12,6 +13,10 @@ import (
 // CloseAndLogError closes the given io.Closer and reports any errors found as a warning in the log
 func CloseAndLogError(closer io.Closer, location string) {
 	if err := closer.Close(); err != nil {
+		// suppress "file already closed" log messages
+		if errors.Is(err, fs.ErrClosed) {
+			return
+		}
 		log.Debugf("unable to close file for location=%q: %+v", location, err)
 	}
 }

internal/evidence/constants.go

@@ -0,0 +1,9 @@
+package evidence
+
+// this package exists so that the file package can reference package evidence in tests without creating a circular dependency.
+
+const (
+	AnnotationKey        = "evidence"
+	PrimaryAnnotation    = "primary"
+	SupportingAnnotation = "supporting"
+)

internal/file/digest.go

@@ -1,12 +1,15 @@
 package file
 
 import (
+	"context"
 	"crypto"
 	"fmt"
 	"hash"
 	"io"
 	"strings"
 
+	"github.com/anchore/go-sync"
+	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/file"
 )
 
@@ -21,7 +24,7 @@ func supportedHashAlgorithms() []crypto.Hash {
 	}
 }
 
-func NewDigestsFromFile(closer io.ReadCloser, hashes []crypto.Hash) ([]file.Digest, error) {
+func NewDigestsFromFile(ctx context.Context, closer io.ReadCloser, hashes []crypto.Hash) ([]file.Digest, error) {
 	hashes = NormalizeHashes(hashes)
 	// create a set of hasher objects tied together with a single writer to feed content into
 	hashers := make([]hash.Hash, len(hashes))
@@ -31,7 +34,7 @@ func NewDigestsFromFile(closer io.ReadCloser, hashes []crypto.Hash) ([]file.Dige
 		writers[idx] = hashers[idx]
 	}
 
-	size, err := io.Copy(io.MultiWriter(writers...), closer)
+	size, err := io.Copy(sync.ParallelWriter(ctx, cataloging.ExecutorCPU, writers...), closer)
 	if err != nil {
 		return nil, err
 	}

internal/file/digest_test.go

@@ -1,6 +1,7 @@
 package file
 
 import (
+	"context"
 	"crypto"
 	"os"
 	"testing"
@@ -81,7 +82,7 @@ func TestNewDigestsFromFile(t *testing.T) {
 			fh, err := os.Open(tt.fixture)
 			require.NoError(t, err)
 
-			got, err := NewDigestsFromFile(fh, tt.hashes)
+			got, err := NewDigestsFromFile(context.TODO(), fh, tt.hashes)
 			tt.wantErr(t, err)
 			if err != nil {
 				return

internal/file/tar_file_traversal.go

@@ -23,7 +23,7 @@ func ExtractGlobsFromTarToUniqueTempFile(archivePath, dir string, globs ...strin
 		defer file.Close()
 
 		// ignore directories
-		if file.FileInfo.IsDir() {
+		if file.IsDir() {
 			return nil
 		}
 

internal/file/zip_file_manifest.go

@@ -28,7 +28,7 @@ func NewZipFileManifest(archivePath string) (ZipFileManifest, error) {
 		}
 	}()
 
-	for _, file := range zipReader.Reader.File {
+	for _, file := range zipReader.File {
 		manifest.Add(file.Name, file.FileInfo())
 	}
 	return manifest, nil

internal/file/zip_file_traversal.go

@@ -53,7 +53,7 @@ func TraverseFilesInZip(archivePath string, visitor func(*zip.File) error, paths
 		}
 	}()
 
-	for _, file := range zipReader.Reader.File {
+	for _, file := range zipReader.File {
 		// if no paths are given then assume that all files should be traversed
 		if len(paths) > 0 {
 			if _, ok := request[file.Name]; !ok {

internal/licenses/context.go

@@ -6,12 +6,19 @@ import (
 
 type licenseScannerKey struct{}
 
+var ctxKey = licenseScannerKey{}
+
 func SetContextLicenseScanner(ctx context.Context, s Scanner) context.Context {
-	return context.WithValue(ctx, licenseScannerKey{}, s)
+	return context.WithValue(ctx, ctxKey, s)
+}
+
+func IsContextLicenseScannerSet(ctx context.Context) bool {
+	_, ok := ctx.Value(ctxKey).(Scanner)
+	return ok
 }
 
 func ContextLicenseScanner(ctx context.Context) (Scanner, error) {
-	if s, ok := ctx.Value(licenseScannerKey{}).(Scanner); ok {
+	if s, ok := ctx.Value(ctxKey).(Scanner); ok {
 		return s, nil
 	}
 	return NewDefaultScanner()

internal/licenses/context_test.go

@@ -0,0 +1,48 @@
+package licenses
+
+import (
+	"context"
+	"testing"
+
+	"github.com/stretchr/testify/require"
+)
+
+func TestSetContextLicenseScanner(t *testing.T) {
+	scanner := testScanner(true)
+	ctx := context.Background()
+	ctx = SetContextLicenseScanner(ctx, scanner)
+
+	val := ctx.Value(ctxKey)
+	require.NotNil(t, val)
+	s, ok := val.(Scanner)
+	require.True(t, ok)
+	require.Equal(t, scanner, s)
+}
+
+func TestIsContextLicenseScannerSet(t *testing.T) {
+	scanner := testScanner(true)
+	ctx := context.Background()
+	require.False(t, IsContextLicenseScannerSet(ctx))
+
+	ctx = SetContextLicenseScanner(ctx, scanner)
+	require.True(t, IsContextLicenseScannerSet(ctx))
+}
+
+func TestContextLicenseScanner(t *testing.T) {
+	t.Run("with scanner", func(t *testing.T) {
+		scanner := testScanner(true)
+		ctx := SetContextLicenseScanner(context.Background(), scanner)
+		s, err := ContextLicenseScanner(ctx)
+		if err != nil || s != scanner {
+			t.Fatal("expected scanner from context")
+		}
+	})
+
+	t.Run("without scanner", func(t *testing.T) {
+		ctx := context.Background()
+		s, err := ContextLicenseScanner(ctx)
+		if err != nil || s == nil {
+			t.Fatal("expected default scanner")
+		}
+	})
+}

internal/licenses/test-fixtures/Knuth-CTAN

@@ -0,0 +1,5 @@
+Knuth CTAN License
+Full name
+Knuth CTAN License
+
+This software is copyrighted. Unlimited copying and redistribution of this package and/or its individual files are permitted as long as there are no modifications. Modifications, and redistribution of modifications, are also permitted, but only if the resulting package and/or files are renamed.

internal/relationship/by_file_ownership.go

@@ -9,6 +9,7 @@ import (
 	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/internal/sbomsync"
 	"github.com/anchore/syft/syft/artifact"
+	"github.com/anchore/syft/syft/file"
 	"github.com/anchore/syft/syft/pkg"
 	"github.com/anchore/syft/syft/sbom"
 )
@@ -32,11 +33,11 @@ type ownershipByFilesMetadata struct {
 	Files []string `json:"files"`
 }
 
-func ByFileOwnershipOverlapWorker(accessor sbomsync.Accessor) {
+func ByFileOwnershipOverlapWorker(resolver file.Resolver, accessor sbomsync.Accessor) {
 	var relationships []artifact.Relationship
 
 	accessor.ReadFromSBOM(func(s *sbom.SBOM) {
-		relationships = byFileOwnershipOverlap(s.Artifacts.Packages)
+		relationships = byFileOwnershipOverlap(resolver, s.Artifacts.Packages)
 	})
 
 	accessor.WriteToSBOM(func(s *sbom.SBOM) {
@@ -46,8 +47,8 @@ func ByFileOwnershipOverlapWorker(accessor sbomsync.Accessor) {
 
 // byFileOwnershipOverlap creates a package-to-package relationship based on discovering which packages have
 // evidence locations that overlap with ownership claim from another package's package manager metadata.
-func byFileOwnershipOverlap(catalog *pkg.Collection) []artifact.Relationship {
-	var relationships = findOwnershipByFilesRelationships(catalog)
+func byFileOwnershipOverlap(resolver file.Resolver, catalog *pkg.Collection) []artifact.Relationship {
+	var relationships = findOwnershipByFilesRelationships(resolver, catalog)
 
 	var edges []artifact.Relationship
 	for parentID, children := range relationships {
@@ -84,7 +85,7 @@ func byFileOwnershipOverlap(catalog *pkg.Collection) []artifact.Relationship {
 
 // findOwnershipByFilesRelationships find overlaps in file ownership with a file that defines another package. Specifically, a .Location.Path of
 // a package is found to be owned by another (from the owner's .Metadata.Files[]).
-func findOwnershipByFilesRelationships(catalog *pkg.Collection) map[artifact.ID]map[artifact.ID]*strset.Set {
+func findOwnershipByFilesRelationships(resolver file.Resolver, catalog *pkg.Collection) map[artifact.ID]map[artifact.ID]*strset.Set { //nolint:gocognit
 	var relationships = make(map[artifact.ID]map[artifact.ID]*strset.Set)
 
 	if catalog == nil {
@@ -102,27 +103,31 @@ func findOwnershipByFilesRelationships(catalog *pkg.Collection) map[artifact.ID]
 		if !ok {
 			continue
 		}
-		for _, ownedFilePath := range pkgFileOwner.OwnedFiles() {
-			if matchesAny(ownedFilePath, globsForbiddenFromBeingOwned) {
-				// we skip over known exceptions to file ownership, such as the RPM package owning
-				// the RPM DB path, otherwise the RPM package would "own" all RPMs, which is not intended
-				continue
-			}
 
-			// look for package(s) in the catalog that may be owned by this package and mark the relationship
-			for _, subPackage := range catalog.PackagesByPath(ownedFilePath) {
-				subID := subPackage.ID()
-				if subID == id {
+		for _, ownedFilePath := range pkgFileOwner.OwnedFiles() {
+			// find the first path that results in a hit
+			for _, ownedPath := range allPaths(ownedFilePath, resolver) {
+				if matchesAny(ownedPath, globsForbiddenFromBeingOwned) {
+					// we skip over known exceptions to file ownership, such as the RPM package owning
+					// the RPM DB path, otherwise the RPM package would "own" all RPMs, which is not intended
 					continue
 				}
-				if _, exists := relationships[id]; !exists {
-					relationships[id] = make(map[artifact.ID]*strset.Set)
-				}
 
-				if _, exists := relationships[id][subID]; !exists {
-					relationships[id][subID] = strset.New()
+				// look for package(s) in the catalog that may be owned by this package and mark the relationship
+				for _, subPackage := range catalog.PackagesByPath(ownedPath) {
+					subID := subPackage.ID()
+					if subID == id {
+						continue
+					}
+					if _, exists := relationships[id]; !exists {
+						relationships[id] = make(map[artifact.ID]*strset.Set)
+					}
+
+					if _, exists := relationships[id][subID]; !exists {
+						relationships[id][subID] = strset.New()
+					}
+					relationships[id][subID].Add(ownedPath)
 				}
-				relationships[id][subID].Add(ownedFilePath)
 			}
 		}
 	}
@@ -130,6 +135,25 @@ func findOwnershipByFilesRelationships(catalog *pkg.Collection) map[artifact.ID]
 	return relationships
 }
 
+func allPaths(ownedFilePath string, resolver file.Resolver) []string {
+	// though we have a string path, we need to resolve symlinks and other filesystem oddities since we cannot assume this is a real path
+	var locs []file.Location
+	var err error
+	if resolver != nil {
+		locs, err = resolver.FilesByPath(ownedFilePath)
+		if err != nil {
+			log.WithFields("error", err, "path", ownedFilePath).Trace("unable to find path for owned file")
+			locs = nil
+		}
+	}
+
+	ownedFilePaths := strset.New(ownedFilePath)
+	for _, loc := range locs {
+		ownedFilePaths.Add(loc.RealPath)
+	}
+	return ownedFilePaths.List()
+}
+
 func matchesAny(s string, globs []string) bool {
 	for _, g := range globs {
 		matches, err := doublestar.Match(g, s)

internal/relationship/by_file_ownership_test.go

@@ -4,7 +4,7 @@ import (
 	"testing"
 
 	"github.com/google/go-cmp/cmp"
-	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
 
 	"github.com/anchore/syft/internal/cmptest"
 	"github.com/anchore/syft/syft/artifact"
@@ -12,11 +12,29 @@ import (
 	"github.com/anchore/syft/syft/pkg"
 )
 
+type mockFR struct {
+	file.Resolver
+	translate map[string]string
+}
+
+func (m mockFR) FilesByPath(paths ...string) ([]file.Location, error) {
+	var results []file.Location
+	for _, p := range paths {
+		tPath, ok := m.translate[p]
+		if !ok {
+			tPath = p
+		}
+		results = append(results, file.NewLocation(tPath))
+	}
+	return results, nil
+}
+
 func TestOwnershipByFilesRelationship(t *testing.T) {
 
 	tests := []struct {
-		name  string
-		setup func(t testing.TB) ([]pkg.Package, []artifact.Relationship)
+		name     string
+		resolver file.Resolver
+		setup    func(t testing.TB) ([]pkg.Package, []artifact.Relationship)
 	}{
 		{
 			name: "owns-by-real-path",
@@ -60,6 +78,75 @@ func TestOwnershipByFilesRelationship(t *testing.T) {
 				return []pkg.Package{parent, child}, []artifact.Relationship{relationship}
 			},
 		},
+		{
+			name: "misses-by-dead-symlink",
+			resolver: mockFR{
+				translate: map[string]string{
+					"/bin/gzip": "", // treat this as a dead symlink
+				},
+			},
+			setup: func(t testing.TB) ([]pkg.Package, []artifact.Relationship) {
+				parent := pkg.Package{
+					Type: pkg.DebPkg,
+					Metadata: pkg.DpkgDBEntry{
+						Files: []pkg.DpkgFileRecord{
+							{Path: "/bin/gzip"}, // this symlinks to gzip via /bin -> /usr/bin
+						},
+					},
+				}
+				parent.SetID()
+
+				child := pkg.Package{
+					Locations: file.NewLocationSet(
+						file.NewVirtualLocation("/usr/bin/gzip", "/usr/bin/gzip"),
+					),
+					Type: pkg.BinaryPkg,
+				}
+				child.SetID()
+
+				return []pkg.Package{parent, child}, nil // importantly, no relationship is expected
+			},
+		},
+		{
+			name: "owns-by-symlink",
+			resolver: mockFR{
+				translate: map[string]string{
+					"/bin/gzip": "/usr/bin/gzip", // if there is a string path of /bin/gzip then return the real path of /usr/bin/gzip
+				},
+			},
+			setup: func(t testing.TB) ([]pkg.Package, []artifact.Relationship) {
+				parent := pkg.Package{
+					Type: pkg.DebPkg,
+					Metadata: pkg.DpkgDBEntry{
+						Files: []pkg.DpkgFileRecord{
+							{Path: "/bin/gzip"}, // this symlinks to gzip via /bin -> /usr/bin
+						},
+					},
+				}
+				parent.SetID()
+
+				child := pkg.Package{
+					Locations: file.NewLocationSet(
+						file.NewVirtualLocation("/usr/bin/gzip", "/usr/bin/gzip"),
+					),
+					Type: pkg.BinaryPkg,
+				}
+				child.SetID()
+
+				relationship := artifact.Relationship{
+					From: parent,
+					To:   child,
+					Type: artifact.OwnershipByFileOverlapRelationship,
+					Data: ownershipByFilesMetadata{
+						Files: []string{
+							"/usr/bin/gzip",
+						},
+					},
+				}
+
+				return []pkg.Package{parent, child}, []artifact.Relationship{relationship}
+			},
+		},
 		{
 			name: "owns-by-virtual-path",
 			setup: func(t testing.TB) ([]pkg.Package, []artifact.Relationship) {
@@ -140,12 +227,12 @@ func TestOwnershipByFilesRelationship(t *testing.T) {
 		t.Run(test.name, func(t *testing.T) {
 			pkgs, expectedRelations := test.setup(t)
 			c := pkg.NewCollection(pkgs...)
-			relationships := byFileOwnershipOverlap(c)
+			relationships := byFileOwnershipOverlap(test.resolver, c)
 
-			assert.Len(t, relationships, len(expectedRelations))
+			require.Len(t, relationships, len(expectedRelations))
 			for idx, expectedRelationship := range expectedRelations {
 				actualRelationship := relationships[idx]
-				if d := cmp.Diff(expectedRelationship, actualRelationship, cmptest.DefaultCommonOptions()...); d != "" {
+				if d := cmp.Diff(expectedRelationship, actualRelationship, cmptest.DefaultOptions()...); d != "" {
 					t.Errorf("unexpected relationship (-want, +got): %s", d)
 				}
 			}

internal/relationship/sort.go

@@ -22,7 +22,7 @@ func less(i, j artifact.Relationship) bool {
 	jFrom, ok3 := j.From.(pkg.Package)
 	jTo, ok4 := j.To.(pkg.Package)
 
-	if !(ok1 && ok2 && ok3 && ok4) {
+	if !ok1 && !ok2 && !ok3 && !ok4 {
 		return false
 	}
 

internal/task/executor.go

@@ -5,11 +5,8 @@ import (
 	"fmt"
 	"runtime/debug"
 	"slices"
-	"sync"
 	"time"
 
-	"github.com/hashicorp/go-multierror"
-
 	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/internal/sbomsync"
 	"github.com/anchore/syft/internal/unknown"
@@ -18,64 +15,17 @@ import (
 	"github.com/anchore/syft/syft/sbom"
 )
 
-type Executor struct {
-	numWorkers int
-	tasks      chan Task
-}
-
-func NewTaskExecutor(tasks []Task, numWorkers int) *Executor {
-	p := &Executor{
-		numWorkers: numWorkers,
-		tasks:      make(chan Task, len(tasks)),
+func RunTask(ctx context.Context, tsk Task, resolver file.Resolver, s sbomsync.Builder, prog *monitor.CatalogerTaskProgress) error {
+	err := runTaskSafely(ctx, tsk, resolver, s)
+	unknowns, remainingErrors := unknown.ExtractCoordinateErrors(err)
+	if len(unknowns) > 0 {
+		appendUnknowns(s, tsk.Name(), unknowns)
 	}
-
-	for i := range tasks {
-		p.tasks <- tasks[i]
+	if remainingErrors != nil {
+		prog.SetError(remainingErrors)
 	}
-	close(p.tasks)
-
-	return p
-}
-
-func (p *Executor) Execute(ctx context.Context, resolver file.Resolver, s sbomsync.Builder, prog *monitor.CatalogerTaskProgress) error {
-	var lock sync.Mutex
-	withLock := func(fn func()) {
-		lock.Lock()
-		defer lock.Unlock()
-		fn()
-	}
-	var errs error
-	wg := &sync.WaitGroup{}
-	for i := 0; i < p.numWorkers; i++ {
-		wg.Add(1)
-		go func() {
-			defer wg.Done()
-
-			for {
-				tsk, ok := <-p.tasks
-				if !ok {
-					return
-				}
-
-				err := runTaskSafely(ctx, tsk, resolver, s)
-				unknowns, remainingErrors := unknown.ExtractCoordinateErrors(err)
-				if len(unknowns) > 0 {
-					appendUnknowns(s, tsk.Name(), unknowns)
-				}
-				if remainingErrors != nil {
-					withLock(func() {
-						errs = multierror.Append(errs, fmt.Errorf("failed to run task: %w", remainingErrors))
-						prog.SetError(remainingErrors)
-					})
-				}
-				prog.Increment()
-			}
-		}()
-	}
-
-	wg.Wait()
-
-	return errs
+	prog.Increment()
+	return remainingErrors
 }
 
 func appendUnknowns(builder sbomsync.Builder, taskName string, unknowns []unknown.CoordinateError) {

internal/task/executor_test.go

@@ -16,9 +16,8 @@ func Test_TaskExecutor_PanicHandling(t *testing.T) {
 	tsk := NewTask("panicking-cataloger", func(_ context.Context, _ file.Resolver, _ sbomsync.Builder) error {
 		panic("something bad happened")
 	})
-	ex := NewTaskExecutor([]Task{tsk}, 1)
 
-	err := ex.Execute(context.Background(), nil, nil, &monitor.CatalogerTaskProgress{
+	err := RunTask(context.Background(), tsk, nil, nil, &monitor.CatalogerTaskProgress{
 		Manual: progress.NewManual(-1),
 	})
 

internal/task/file_tasks.go

@@ -120,14 +120,14 @@ func newExecutableCatalogerTaskFactory(tags ...string) factory {
 }
 
 func newExecutableCatalogerTask(selection file.Selection, cfg executable.Config, tags ...string) Task {
-	fn := func(_ context.Context, resolver file.Resolver, builder sbomsync.Builder) error {
+	fn := func(ctx context.Context, resolver file.Resolver, builder sbomsync.Builder) error {
 		if selection == file.NoFilesSelection {
 			return nil
 		}
 
 		accessor := builder.(sbomsync.Accessor)
 
-		result, err := executable.NewCataloger(cfg).Catalog(resolver)
+		result, err := executable.NewCataloger(cfg).CatalogCtx(ctx, resolver)
 
 		accessor.WriteToSBOM(func(sbom *sbom.SBOM) {
 			sbom.Artifacts.Executables = result

internal/task/package_task_factory.go

@@ -245,10 +245,10 @@ func packageFileOwnershipRelationships(p pkg.Package, resolver file.PathResolver
 		}
 
 		for _, ref := range pathRefs {
-			if oldRef, ok := locations[ref.Coordinates.ID()]; ok {
+			if oldRef, ok := locations[ref.ID()]; ok {
 				log.Debugf("found path duplicate of %s", oldRef.RealPath)
 			}
-			locations[ref.Coordinates.ID()] = ref
+			locations[ref.ID()] = ref
 		}
 	}
 

internal/task/package_tasks.go

@@ -63,19 +63,19 @@ func DefaultPackageTaskFactories() Factories {
 
 		// OS package declared catalogers ///////////////////////////////////////////////////////////////////////////
 		newSimplePackageTaskFactory(redhat.NewArchiveCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.OSTag, "linux", "rpm", "redhat"),
+		newSimplePackageTaskFactory(debian.NewArchiveCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.OSTag, "linux", "deb", "debian"),
 
 		// language-specific package installed catalogers ///////////////////////////////////////////////////////////////////////////
 		newSimplePackageTaskFactory(cpp.NewConanInfoCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "cpp", "conan"),
 		newSimplePackageTaskFactory(javascript.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, JavaScript, Node),
 		newSimplePackageTaskFactory(php.NewComposerInstalledCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "php", "composer"),
-		newSimplePackageTaskFactory(r.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "r"),
+		newSimplePackageTaskFactory(r.NewPackageCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, pkgcataloging.DirectoryTag, "r"),
 		newSimplePackageTaskFactory(ruby.NewInstalledGemSpecCataloger, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "ruby", "gem", "gemspec"),
 		newSimplePackageTaskFactory(rust.NewAuditBinaryCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "rust", "binary"),
 
 		// language-specific package declared catalogers ///////////////////////////////////////////////////////////////////////////
 		newSimplePackageTaskFactory(cpp.NewConanCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "cpp", "conan"),
 		newSimplePackageTaskFactory(dart.NewPubspecLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "dart"),
-		newSimplePackageTaskFactory(dotnet.NewDotnetDepsCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "dotnet", "c#"),
 		newSimplePackageTaskFactory(elixir.NewMixLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "elixir"),
 		newSimplePackageTaskFactory(erlang.NewRebarLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "erlang"),
 		newSimplePackageTaskFactory(erlang.NewOTPCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "erlang", "otp"),
@@ -100,7 +100,7 @@ func DefaultPackageTaskFactories() Factories {
 			pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, JavaScript, Node, NPM,
 		),
 		newSimplePackageTaskFactory(php.NewComposerLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "php", "composer"),
-		newSimplePackageTaskFactory(php.NewPeclCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, pkgcataloging.ImageTag, "php", "pecl"),
+		newSimplePackageTaskFactory(php.NewPearCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, pkgcataloging.ImageTag, "php", "pear"),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
 				return python.NewPackageCataloger(cfg.PackagesConfig.Python)
@@ -116,11 +116,13 @@ func DefaultPackageTaskFactories() Factories {
 		newSimplePackageTaskFactory(ocaml.NewOpamPackageManagerCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "ocaml", "opam"),
 
 		// language-specific package for both image and directory scans (but not necessarily declared) ////////////////////////////////////////
-		newSimplePackageTaskFactory(dotnet.NewDotnetPackagesLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.ImageTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "dotnet", "c#"),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
-				return dotnet.NewDotnetPortableExecutableCataloger(cfg.PackagesConfig.Dotnet)
-			}, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "dotnet", "c#", "binary"),
+				return dotnet.NewDotnetDepsBinaryCataloger(cfg.PackagesConfig.Dotnet)
+			},
+			pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "dotnet", "c#",
+		),
+		newSimplePackageTaskFactory(dotnet.NewDotnetPackagesLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.ImageTag, pkgcataloging.DirectoryTag, pkgcataloging.LanguageTag, "dotnet", "c#"),
 		newSimplePackageTaskFactory(python.NewInstalledPackageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "python"),
 		newPackageTaskFactory(
 			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
@@ -135,7 +137,12 @@ func DefaultPackageTaskFactories() Factories {
 			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Java, Maven,
 		),
 		newSimplePackageTaskFactory(java.NewNativeImageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, Java),
-		newSimplePackageTaskFactory(nix.NewStoreCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "nix"),
+		newPackageTaskFactory(
+			func(cfg CatalogingFactoryConfig) pkg.Cataloger {
+				return nix.NewCataloger(cfg.PackagesConfig.Nix)
+			},
+			pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "nix",
+		),
 		newSimplePackageTaskFactory(lua.NewPackageCataloger, pkgcataloging.DirectoryTag, pkgcataloging.InstalledTag, pkgcataloging.ImageTag, pkgcataloging.LanguageTag, "lua"),
 
 		// other package catalogers ///////////////////////////////////////////////////////////////////////////
@@ -159,5 +166,13 @@ func DefaultPackageTaskFactories() Factories {
 		newSimplePackageTaskFactory(bitnamiSbomCataloger.NewCataloger, "bitnami", pkgcataloging.InstalledTag, pkgcataloging.ImageTag),
 		newSimplePackageTaskFactory(wordpress.NewWordpressPluginCataloger, pkgcataloging.DirectoryTag, pkgcataloging.ImageTag, "wordpress"),
 		newSimplePackageTaskFactory(terraform.NewLockCataloger, pkgcataloging.DeclaredTag, pkgcataloging.DirectoryTag, "terraform"),
+
+		// deprecated catalogers ////////////////////////////////////////
+		// these are catalogers that should not be selectable other than specific inclusion via name or "deprecated" tag (to remain backwards compatible)
+		newSimplePackageTaskFactory(dotnet.NewDotnetDepsCataloger, pkgcataloging.DeprecatedTag),               // TODO: remove in syft v2.0
+		newSimplePackageTaskFactory(dotnet.NewDotnetPortableExecutableCataloger, pkgcataloging.DeprecatedTag), // TODO: remove in syft v2.0
+		newSimplePackageTaskFactory(php.NewPeclCataloger, pkgcataloging.DeprecatedTag),                        // TODO: remove in syft v2.0
+		newSimplePackageTaskFactory(nix.NewStoreCataloger, pkgcataloging.DeprecatedTag),                       // TODO: remove in syft v2.0
+
 	}
 }

internal/task/relationship_tasks.go

@@ -46,7 +46,7 @@ func finalizeRelationships(resolver file.Resolver, builder sbomsync.Builder, cfg
 
 	// add relationships showing packages that are evident by a file which is owned by another package (package-to-package)
 	if cfg.PackageFileOwnershipOverlap {
-		relationship.ByFileOwnershipOverlapWorker(accessor)
+		relationship.ByFileOwnershipOverlapWorker(resolver, accessor)
 	}
 
 	// conditionally remove binary packages based on file ownership overlap relationships found

internal/task/scope_tasks.go

@@ -0,0 +1,63 @@
+package task
+
+import (
+	"context"
+	"fmt"
+
+	"github.com/anchore/syft/internal/sbomsync"
+	"github.com/anchore/syft/syft/artifact"
+	"github.com/anchore/syft/syft/file"
+	"github.com/anchore/syft/syft/pkg"
+	"github.com/anchore/syft/syft/sbom"
+)
+
+func NewDeepSquashedScopeCleanupTask() Task {
+	fn := func(_ context.Context, _ file.Resolver, builder sbomsync.Builder) error {
+		accessor := builder.(sbomsync.Accessor)
+
+		// remove all packages that doesn't exist in the final state of the image
+		builder.DeletePackages(packagesToRemove(accessor)...)
+		return nil
+	}
+
+	return NewTask("deep-squashed-cleaner", fn)
+}
+
+func packagesToRemove(accessor sbomsync.Accessor) []artifact.ID {
+	pkgsToDelete := make([]artifact.ID, 0)
+	accessor.ReadFromSBOM(func(s *sbom.SBOM) {
+		filterDuplicates := make(map[string]bool)
+		for p := range s.Artifacts.Packages.Enumerate() {
+			noSquashed := true
+			noPrimary := true
+			for _, l := range p.Locations.ToSlice() {
+				isPrimaryEvidence := l.Annotations[pkg.EvidenceAnnotationKey] == pkg.PrimaryEvidenceAnnotation
+				switch l.Annotations[file.VisibleAnnotationKey] {
+				case file.VisibleAnnotation:
+					if isPrimaryEvidence || p.Type == pkg.BinaryPkg {
+						noSquashed = false
+						break
+					}
+				case "":
+					if isPrimaryEvidence {
+						if exists := filterDuplicates[getKey(p, l)]; exists {
+							break
+						}
+						filterDuplicates[getKey(p, l)] = true
+						noPrimary = false
+						break
+					}
+				}
+			}
+
+			if noSquashed && noPrimary {
+				pkgsToDelete = append(pkgsToDelete, p.ID())
+			}
+		}
+	})
+	return pkgsToDelete
+}
+
+func getKey(pkg pkg.Package, loc file.Location) string {
+	return fmt.Sprintf("%s-%s-%s-%s", pkg.Name, pkg.Version, loc.RealPath, loc.AccessPath)
+}

schema/json/schema-latest.json

@@ -1,6 +1,6 @@
 {
   "$schema": "https://json-schema.org/draft/2020-12/schema",
-  "$id": "anchore.io/schema/syft/json/16.0.22/document",
+  "$id": "anchore.io/schema/syft/json/16.0.28/document",
   "$ref": "#/$defs/Document",
   "$defs": {
     "AlpmDbEntry": {
@@ -519,6 +519,14 @@
         },
         "hashPath": {
           "type": "string"
+        },
+        "executables": {
+          "patternProperties": {
+            ".*": {
+              "$ref": "#/$defs/DotnetPortableExecutableEntry"
+            }
+          },
+          "type": "object"
         }
       },
       "type": "object",
@@ -586,6 +594,66 @@
         "productVersion"
       ]
     },
+    "DpkgArchiveEntry": {
+      "properties": {
+        "package": {
+          "type": "string"
+        },
+        "source": {
+          "type": "string"
+        },
+        "version": {
+          "type": "string"
+        },
+        "sourceVersion": {
+          "type": "string"
+        },
+        "architecture": {
+          "type": "string"
+        },
+        "maintainer": {
+          "type": "string"
+        },
+        "installedSize": {
+          "type": "integer"
+        },
+        "provides": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "depends": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "preDepends": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "files": {
+          "items": {
+            "$ref": "#/$defs/DpkgFileRecord"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object",
+      "required": [
+        "package",
+        "source",
+        "version",
+        "sourceVersion",
+        "architecture",
+        "maintainer",
+        "installedSize",
+        "files"
+      ]
+    },
     "DpkgDbEntry": {
       "properties": {
         "package": {
@@ -927,6 +995,20 @@
         "size"
       ]
     },
+    "GithubActionsUseStatement": {
+      "properties": {
+        "value": {
+          "type": "string"
+        },
+        "comment": {
+          "type": "string"
+        }
+      },
+      "type": "object",
+      "required": [
+        "value"
+      ]
+    },
     "GoModuleBuildinfoEntry": {
       "properties": {
         "goBuildSettings": {
@@ -1309,6 +1391,9 @@
         "value": {
           "type": "string"
         },
+        "fullText": {
+          "type": "string"
+        },
         "spdxExpression": {
           "type": "string"
         },
@@ -1334,6 +1419,7 @@
       "type": "object",
       "required": [
         "value",
+        "fullText",
         "spdxExpression",
         "type",
         "urls",
@@ -1574,14 +1660,57 @@
         "kb"
       ]
     },
+    "NixDerivation": {
+      "properties": {
+        "path": {
+          "type": "string"
+        },
+        "system": {
+          "type": "string"
+        },
+        "inputDerivations": {
+          "items": {
+            "$ref": "#/$defs/NixDerivationReference"
+          },
+          "type": "array"
+        },
+        "inputSources": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object"
+    },
+    "NixDerivationReference": {
+      "properties": {
+        "path": {
+          "type": "string"
+        },
+        "outputs": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object"
+    },
     "NixStoreEntry": {
       "properties": {
-        "outputHash": {
+        "path": {
           "type": "string"
         },
         "output": {
           "type": "string"
         },
+        "outputHash": {
+          "type": "string"
+        },
+        "derivation": {
+          "$ref": "#/$defs/NixDerivation"
+        },
         "files": {
           "items": {
             "type": "string"
@@ -1591,8 +1720,7 @@
       },
       "type": "object",
       "required": [
-        "outputHash",
-        "files"
+        "outputHash"
       ]
     },
     "OpamPackage": {
@@ -1721,6 +1849,9 @@
             {
               "$ref": "#/$defs/DotnetPortableExecutableEntry"
             },
+            {
+              "$ref": "#/$defs/DpkgArchiveEntry"
+            },
             {
               "$ref": "#/$defs/DpkgDbEntry"
             },
@@ -1733,6 +1864,9 @@
             {
               "$ref": "#/$defs/ErlangRebarLockEntry"
             },
+            {
+              "$ref": "#/$defs/GithubActionsUseStatement"
+            },
             {
               "$ref": "#/$defs/GoModuleBuildinfoEntry"
             },
@@ -1784,6 +1918,9 @@
             {
               "$ref": "#/$defs/PhpComposerLockEntry"
             },
+            {
+              "$ref": "#/$defs/PhpPearEntry"
+            },
             {
               "$ref": "#/$defs/PhpPeclEntry"
             },
@@ -2076,11 +2213,38 @@
         "dist"
       ]
     },
+    "PhpPearEntry": {
+      "properties": {
+        "name": {
+          "type": "string"
+        },
+        "channel": {
+          "type": "string"
+        },
+        "version": {
+          "type": "string"
+        },
+        "license": {
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        }
+      },
+      "type": "object",
+      "required": [
+        "name",
+        "version"
+      ]
+    },
     "PhpPeclEntry": {
       "properties": {
         "name": {
           "type": "string"
         },
+        "channel": {
+          "type": "string"
+        },
         "version": {
           "type": "string"
         },

syft/artifact/id.go

@@ -3,7 +3,7 @@ package artifact
 import (
 	"fmt"
 
-	"github.com/mitchellh/hashstructure/v2"
+	"github.com/gohugoio/hashstructure"
 )
 
 // ID represents a unique value for each package added to a package catalog.
@@ -14,7 +14,7 @@ type Identifiable interface {
 }
 
 func IDByHash(obj interface{}) (ID, error) {
-	f, err := hashstructure.Hash(obj, hashstructure.FormatV2, &hashstructure.HashOptions{
+	f, err := hashstructure.Hash(obj, &hashstructure.HashOptions{
 		ZeroNil:      true,
 		SlicesAsSets: true,
 	})

syft/cataloging/executor.go

@@ -0,0 +1,8 @@
+package cataloging
+
+// ExecutorCPU is the name to use when executing parallel functions which are CPU-intensive, such as
+// hashing full files
+const ExecutorCPU = "cpu"
+
+// ExecutorFile is the name to use when executing parallel file reading functions, such as cataloging
+const ExecutorFile = "file"

syft/cataloging/pkgcataloging/config.go

@@ -7,6 +7,7 @@ import (
 	"github.com/anchore/syft/syft/pkg/cataloger/java"
 	"github.com/anchore/syft/syft/pkg/cataloger/javascript"
 	"github.com/anchore/syft/syft/pkg/cataloger/kernel"
+	"github.com/anchore/syft/syft/pkg/cataloger/nix"
 	"github.com/anchore/syft/syft/pkg/cataloger/python"
 )
 
@@ -17,6 +18,7 @@ type Config struct {
 	JavaArchive java.ArchiveCatalogerConfig       `yaml:"java-archive" json:"java-archive" mapstructure:"java-archive"`
 	JavaScript  javascript.CatalogerConfig        `yaml:"javascript" json:"javascript" mapstructure:"javascript"`
 	LinuxKernel kernel.LinuxKernelCatalogerConfig `yaml:"linux-kernel" json:"linux-kernel" mapstructure:"linux-kernel"`
+	Nix         nix.Config                        `yaml:"nix" json:"nix" mapstructure:"nix"`
 	Python      python.CatalogerConfig            `yaml:"python" json:"python" mapstructure:"python"`
 }
 
@@ -25,12 +27,18 @@ func DefaultConfig() Config {
 		Binary:      binary.DefaultClassifierCatalogerConfig(),
 		Dotnet:      dotnet.DefaultCatalogerConfig(),
 		Golang:      golang.DefaultCatalogerConfig(),
-		LinuxKernel: kernel.DefaultLinuxKernelCatalogerConfig(),
-		Python:      python.DefaultCatalogerConfig(),
 		JavaArchive: java.DefaultArchiveCatalogerConfig(),
+		LinuxKernel: kernel.DefaultLinuxKernelCatalogerConfig(),
+		Nix:         nix.DefaultConfig(),
+		Python:      python.DefaultCatalogerConfig(),
 	}
 }
 
+func (c Config) WithNixConfig(cfg nix.Config) Config {
+	c.Nix = cfg
+	return c
+}
+
 func (c Config) WithBinaryConfig(cfg binary.ClassifierCatalogerConfig) Config {
 	c.Binary = cfg
 	return c

syft/cataloging/pkgcataloging/tags.go

@@ -21,4 +21,7 @@ const (
 
 	// LanguageTag should be used to identify catalogers that cataloging language-specific packages.
 	LanguageTag = "language"
+
+	// DeprecatedTag should be used to identify catalogers that are deprecated.
+	DeprecatedTag = "deprecated"
 )

syft/create_sbom.go

@@ -3,16 +3,19 @@ package syft
 import (
 	"context"
 	"fmt"
+	"runtime"
 	"sort"
 
 	"github.com/dustin/go-humanize"
 	"github.com/scylladb/go-set/strset"
 
+	"github.com/anchore/go-sync"
 	"github.com/anchore/syft/internal/bus"
 	"github.com/anchore/syft/internal/licenses"
 	"github.com/anchore/syft/internal/sbomsync"
 	"github.com/anchore/syft/internal/task"
 	"github.com/anchore/syft/syft/artifact"
+	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/event/monitor"
 	"github.com/anchore/syft/syft/pkg"
 	"github.com/anchore/syft/syft/sbom"
@@ -62,22 +65,20 @@ func CreateSBOM(ctx context.Context, src source.Source, cfg *CreateSBOMConfig) (
 		},
 	}
 
-	// inject a single license scanner and content config for all package cataloging tasks into context
-	licenseScanner, err := licenses.NewDefaultScanner(
-		licenses.WithIncludeLicenseContent(cfg.Licenses.IncludeUnkownLicenseContent),
-		licenses.WithCoverage(cfg.Licenses.Coverage),
-	)
+	// setup everything we need in context: license scanner, executors, etc.
+	ctx, err = setupContext(ctx, cfg)
 	if err != nil {
-		return nil, fmt.Errorf("could not build licenseScanner for cataloging: %w", err)
+		return nil, err
 	}
-	ctx = licenses.SetContextLicenseScanner(ctx, licenseScanner)
 
 	catalogingProgress := monitorCatalogingTask(src.ID(), taskGroups)
 	packageCatalogingProgress := monitorPackageCatalogingTask()
 
 	builder := sbomsync.NewBuilder(&s, monitorPackageCount(packageCatalogingProgress))
 	for i := range taskGroups {
-		err := task.NewTaskExecutor(taskGroups[i], cfg.Parallelism).Execute(ctx, resolver, builder, catalogingProgress)
+		err = sync.Collect(&ctx, cataloging.ExecutorFile, sync.ToSeq(taskGroups[i]), func(t task.Task) (any, error) {
+			return nil, task.RunTask(ctx, t, resolver, builder, catalogingProgress)
+		}, nil)
 		if err != nil {
 			// TODO: tie this to the open progress monitors...
 			return nil, fmt.Errorf("failed to run tasks: %w", err)
@@ -90,6 +91,60 @@ func CreateSBOM(ctx context.Context, src source.Source, cfg *CreateSBOMConfig) (
 	return &s, nil
 }
 
+func setupContext(ctx context.Context, cfg *CreateSBOMConfig) (context.Context, error) {
+	// configure parallel executors
+	ctx = setContextExecutors(ctx, cfg)
+
+	// configure license scanner
+	// skip injecting a license scanner if one already set on context
+	if licenses.IsContextLicenseScannerSet(ctx) {
+		return ctx, nil
+	}
+
+	return SetContextLicenseScanner(ctx, cfg.Licenses)
+}
+
+// SetContextLicenseScanner creates and sets a license scanner
+// on the provided context using the provided license config.
+func SetContextLicenseScanner(ctx context.Context, cfg cataloging.LicenseConfig) (context.Context, error) {
+	// inject a single license scanner and content config for all package cataloging tasks into context
+	licenseScanner, err := licenses.NewDefaultScanner(
+		licenses.WithIncludeLicenseContent(cfg.IncludeUnkownLicenseContent),
+		licenses.WithCoverage(cfg.Coverage),
+	)
+	if err != nil {
+		return nil, fmt.Errorf("could not build licenseScanner for cataloging: %w", err)
+	}
+	ctx = licenses.SetContextLicenseScanner(ctx, licenseScanner)
+	return ctx, nil
+}
+
+func setContextExecutors(ctx context.Context, cfg *CreateSBOMConfig) context.Context {
+	parallelism := 0
+	if cfg != nil {
+		parallelism = cfg.Parallelism
+	}
+	// executor parallelism is: 0 == serial, no goroutines, 1 == max 1 goroutine
+	// so if they set 1, we just run in serial to avoid overhead, and treat 0 as default, reasonable max for the system
+	// negative is unbounded, so no need for any other special handling
+	switch parallelism {
+	case 0:
+		parallelism = runtime.NumCPU() * 4
+	case 1:
+		parallelism = 0 // run in serial, don't spawn goroutines
+	case -99:
+		parallelism = 1 // special case to catch incorrect executor usage during testing
+	}
+	// set up executors for each dimension we want to coordinate bounds for
+	if !sync.HasContextExecutor(ctx, cataloging.ExecutorCPU) {
+		ctx = sync.SetContextExecutor(ctx, cataloging.ExecutorCPU, sync.NewExecutor(parallelism))
+	}
+	if !sync.HasContextExecutor(ctx, cataloging.ExecutorFile) {
+		ctx = sync.SetContextExecutor(ctx, cataloging.ExecutorFile, sync.NewExecutor(parallelism))
+	}
+	return ctx
+}
+
 func monitorPackageCount(prog *monitor.CatalogerTaskProgress) func(s *sbom.SBOM) {
 	return func(s *sbom.SBOM) {
 		count := humanize.Comma(int64(s.Artifacts.Packages.PackageCount()))

syft/create_sbom_config.go

@@ -49,7 +49,7 @@ func DefaultCreateSBOMConfig() *CreateSBOMConfig {
 		Packages:             pkgcataloging.DefaultConfig(),
 		Licenses:             cataloging.DefaultLicenseConfig(),
 		Files:                filecataloging.DefaultConfig(),
-		Parallelism:          1,
+		Parallelism:          0, // use default: run in parallel based on number of CPUs
 		packageTaskFactories: task.DefaultPackageTaskFactories(),
 
 		// library consumers are free to override the tool values to fit their needs, however, we have some sane defaults
@@ -91,10 +91,6 @@ func (c *CreateSBOMConfig) WithTool(name, version string, cfg ...any) *CreateSBO
 
 // WithParallelism allows for setting the number of concurrent cataloging tasks that can be performed at once
 func (c *CreateSBOMConfig) WithParallelism(p int) *CreateSBOMConfig {
-	if p < 1 {
-		// TODO: warn?
-		p = 1
-	}
 	c.Parallelism = p
 	return c
 }
@@ -130,13 +126,13 @@ func (c *CreateSBOMConfig) WithDataGenerationConfig(cfg cataloging.DataGeneratio
 	return c
 }
 
-// WithPackagesConfig allows for defining any specific behavior for syft-implemented catalogers.
+// WithPackagesConfig allows for defining any specific package cataloging behavior for syft-implemented catalogers.
 func (c *CreateSBOMConfig) WithPackagesConfig(cfg pkgcataloging.Config) *CreateSBOMConfig {
 	c.Packages = cfg
 	return c
 }
 
-// WithPackagesConfig allows for defining any specific behavior for syft-implemented catalogers.
+// WithLicenseConfig allows for defining any specific license cataloging behavior for syft-implemented catalogers.
 func (c *CreateSBOMConfig) WithLicenseConfig(cfg cataloging.LicenseConfig) *CreateSBOMConfig {
 	c.Licenses = cfg
 	return c
@@ -192,6 +188,7 @@ func (c *CreateSBOMConfig) makeTaskGroups(src source.Description) ([][]task.Task
 
 	// generate package and file tasks based on the configuration
 	environmentTasks := c.environmentTasks()
+	scopeTasks := c.scopeTasks()
 	relationshipsTasks := c.relationshipTasks(src)
 	unknownTasks := c.unknownsTasks()
 
@@ -208,6 +205,11 @@ func (c *CreateSBOMConfig) makeTaskGroups(src source.Description) ([][]task.Task
 		taskGroups = append(taskGroups, append(pkgTasks, fileTasks...))
 	}
 
+	// all scope work must be done after all nodes (files and packages) have been cataloged and before the relationship
+	if len(scopeTasks) > 0 {
+		taskGroups = append(taskGroups, scopeTasks)
+	}
+
 	// all relationship work must be done after all nodes (files and packages) have been cataloged
 	if len(relationshipsTasks) > 0 {
 		taskGroups = append(taskGroups, relationshipsTasks)
@@ -282,6 +284,10 @@ func (c *CreateSBOMConfig) selectTasks(src source.Description) ([]task.Task, []t
 		return nil, nil, nil, err
 	}
 
+	if deprecatedNames := deprecatedTasks(finalTaskGroups); len(deprecatedNames) > 0 {
+		log.WithFields("catalogers", strings.Join(deprecatedNames, ", ")).Warn("deprecated catalogers are being used (please remove them from your configuration)")
+	}
+
 	finalPkgTasks := finalTaskGroups[0]
 	finalFileTasks := finalTaskGroups[1]
 
@@ -313,6 +319,18 @@ func (c *CreateSBOMConfig) selectTasks(src source.Description) ([]task.Task, []t
 	return finalPkgTasks, finalFileTasks, &selection, nil
 }
 
+func deprecatedTasks(taskGroups [][]task.Task) []string {
+	// we want to identify any deprecated catalogers that are being used but default selections will always additionally select `file`
+	// catalogers. For this reason, we must explicitly remove `file` catalogers in the selection request. This means if we
+	// deprecate a file cataloger we will need special processing.
+	_, selection, err := task.SelectInGroups(taskGroups, cataloging.SelectionRequest{DefaultNamesOrTags: []string{pkgcataloging.DeprecatedTag}, RemoveNamesOrTags: []string{filecataloging.FileTag}})
+	if err != nil {
+		// ignore the error, as it is not critical
+		return nil
+	}
+	return selection.Result.List()
+}
+
 func logTaskNames(tasks []task.Task, kind string) {
 	// log as tree output (like tree command)
 	log.Debugf("selected %d %s tasks", len(tasks), kind)
@@ -379,6 +397,17 @@ func (c *CreateSBOMConfig) userPackageTasks(cfg task.CatalogingFactoryConfig) ([
 	return persistentPackageTasks, selectablePackageTasks, nil
 }
 
+// scopeTasks returns the set of tasks that should be run to generate additional scope information
+func (c *CreateSBOMConfig) scopeTasks() []task.Task {
+	var tsks []task.Task
+	if c.Search.Scope == source.DeepSquashedScope {
+		if t := task.NewDeepSquashedScopeCleanupTask(); t != nil {
+			tsks = append(tsks, t)
+		}
+	}
+	return tsks
+}
+
 // relationshipTasks returns the set of tasks that should be run to generate additional relationships as well as
 // prune existing relationships.
 func (c *CreateSBOMConfig) relationshipTasks(src source.Description) []task.Task {

syft/file/cataloger/executable/cataloger.go

@@ -2,6 +2,7 @@ package executable
 
 import (
 	"bytes"
+	"context"
 	"debug/elf"
 	"debug/macho"
 	"encoding/binary"
@@ -11,11 +12,13 @@ import (
 	"github.com/bmatcuk/doublestar/v4"
 	"github.com/dustin/go-humanize"
 
+	"github.com/anchore/go-sync"
 	"github.com/anchore/syft/internal"
 	"github.com/anchore/syft/internal/bus"
 	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/internal/mimetype"
 	"github.com/anchore/syft/internal/unknown"
+	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/event/monitor"
 	"github.com/anchore/syft/syft/file"
 	"github.com/anchore/syft/syft/internal/unionreader"
@@ -46,8 +49,10 @@ func NewCataloger(cfg Config) *Cataloger {
 }
 
 func (i *Cataloger) Catalog(resolver file.Resolver) (map[file.Coordinates]file.Executable, error) {
-	var errs error
+	return i.CatalogCtx(context.Background(), resolver)
+}
 
+func (i *Cataloger) CatalogCtx(ctx context.Context, resolver file.Resolver) (map[file.Coordinates]file.Executable, error) {
 	locs, err := resolver.FilesByMIMEType(i.config.MIMETypes...)
 	if err != nil {
 		return nil, fmt.Errorf("unable to get file locations for binaries: %w", err)
@@ -61,19 +66,20 @@ func (i *Cataloger) Catalog(resolver file.Resolver) (map[file.Coordinates]file.E
 	prog := catalogingProgress(int64(len(locs)))
 
 	results := make(map[file.Coordinates]file.Executable)
-	for _, loc := range locs {
+	errs := sync.Collect(&ctx, cataloging.ExecutorFile, sync.ToSeq(locs), func(loc file.Location) (*file.Executable, error) {
 		prog.AtomicStage.Set(loc.Path())
 
 		exec, err := processExecutableLocation(loc, resolver)
 		if err != nil {
-			errs = unknown.Append(errs, loc, err)
+			err = unknown.New(loc, err)
 		}
-
+		return exec, err
+	}, func(loc file.Location, exec *file.Executable) {
 		if exec != nil {
 			prog.Increment()
 			results[loc.Coordinates] = *exec
 		}
-	}
+	})
 
 	log.Debugf("executable cataloger processed %d files", len(results))
 

syft/file/cataloger/filedigest/cataloger.go

@@ -8,12 +8,14 @@ import (
 
 	"github.com/dustin/go-humanize"
 
+	"github.com/anchore/go-sync"
 	stereoscopeFile "github.com/anchore/stereoscope/pkg/file"
 	"github.com/anchore/syft/internal"
 	"github.com/anchore/syft/internal/bus"
 	intFile "github.com/anchore/syft/internal/file"
 	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/internal/unknown"
+	"github.com/anchore/syft/syft/cataloging"
 	"github.com/anchore/syft/syft/event/monitor"
 	"github.com/anchore/syft/syft/file"
 	intCataloger "github.com/anchore/syft/syft/file/cataloger/internal"
@@ -34,7 +36,6 @@ func NewCataloger(hashes []crypto.Hash) *Cataloger {
 func (i *Cataloger) Catalog(ctx context.Context, resolver file.Resolver, coordinates ...file.Coordinates) (map[file.Coordinates][]file.Digest, error) {
 	results := make(map[file.Coordinates][]file.Digest)
 	var locations []file.Location
-	var errs error
 
 	if len(coordinates) == 0 {
 		locations = intCataloger.AllRegularFiles(ctx, resolver)
@@ -49,41 +50,44 @@ func (i *Cataloger) Catalog(ctx context.Context, resolver file.Resolver, coordin
 	}
 
 	prog := catalogingProgress(int64(len(locations)))
-	for _, location := range locations {
-		result, err := i.catalogLocation(resolver, location)
+
+	err := sync.Collect(&ctx, cataloging.ExecutorFile, sync.ToSeq(locations), func(location file.Location) ([]file.Digest, error) {
+		result, err := i.catalogLocation(ctx, resolver, location)
 
 		if errors.Is(err, ErrUndigestableFile) {
-			continue
+			return nil, nil
 		}
 
 		prog.AtomicStage.Set(location.Path())
 
 		if internal.IsErrPathPermission(err) {
 			log.Debugf("file digests cataloger skipping %q: %+v", location.RealPath, err)
-			errs = unknown.Append(errs, location, err)
-			continue
+			return nil, unknown.New(location, err)
 		}
 
 		if err != nil {
 			prog.SetError(err)
-			errs = unknown.Append(errs, location, err)
-			continue
+			return nil, unknown.New(location, err)
 		}
 
 		prog.Increment()
 
-		results[location.Coordinates] = result
-	}
+		return result, nil
+	}, func(location file.Location, digests []file.Digest) {
+		if len(digests) > 0 {
+			results[location.Coordinates] = digests
+		}
+	})
 
 	log.Debugf("file digests cataloger processed %d files", prog.Current())
 
 	prog.AtomicStage.Set(fmt.Sprintf("%s files", humanize.Comma(prog.Current())))
 	prog.SetCompleted()
 
-	return results, errs
+	return results, err
 }
 
-func (i *Cataloger) catalogLocation(resolver file.Resolver, location file.Location) ([]file.Digest, error) {
+func (i *Cataloger) catalogLocation(ctx context.Context, resolver file.Resolver, location file.Location) ([]file.Digest, error) {
 	meta, err := resolver.FileMetadataByLocation(location)
 	if err != nil {
 		return nil, err
@@ -100,7 +104,7 @@ func (i *Cataloger) catalogLocation(resolver file.Resolver, location file.Locati
 	}
 	defer internal.CloseAndLogError(contentReader, location.AccessPath)
 
-	digests, err := intFile.NewDigestsFromFile(contentReader, i.hashes)
+	digests, err := intFile.NewDigestsFromFile(ctx, contentReader, i.hashes)
 	if err != nil {
 		return nil, internal.ErrPath{Context: "digests-cataloger", Path: location.RealPath, Err: err}
 	}

syft/file/cataloger/filedigest/cataloger_test.go

@@ -65,13 +65,13 @@ func TestDigestsCataloger(t *testing.T) {
 			name:     "md5",
 			digests:  []crypto.Hash{crypto.MD5},
 			files:    []string{"test-fixtures/last/empty/empty", "test-fixtures/last/path.txt"},
-			expected: testDigests(t, "test-fixtures/last", []string{"empty/empty", "path.txt"}, crypto.MD5),
+			expected: testDigests(t, "test-fixtures/last", []string{"path.txt"}, crypto.MD5),
 		},
 		{
 			name:     "md5-sha1-sha256",
 			digests:  []crypto.Hash{crypto.MD5, crypto.SHA1, crypto.SHA256},
 			files:    []string{"test-fixtures/last/empty/empty", "test-fixtures/last/path.txt"},
-			expected: testDigests(t, "test-fixtures/last", []string{"empty/empty", "path.txt"}, crypto.MD5, crypto.SHA1, crypto.SHA256),
+			expected: testDigests(t, "test-fixtures/last", []string{"path.txt"}, crypto.MD5, crypto.SHA1, crypto.SHA256),
 		},
 	}
 

syft/file/coordinate_set.go

@@ -3,7 +3,7 @@ package file
 import (
 	"sort"
 
-	"github.com/mitchellh/hashstructure/v2"
+	"github.com/gohugoio/hashstructure"
 	"github.com/scylladb/go-set/strset"
 )
 
@@ -79,7 +79,7 @@ func (s CoordinateSet) ToSlice() []Coordinates {
 }
 
 func (s CoordinateSet) Hash() (uint64, error) {
-	return hashstructure.Hash(s.ToSlice(), hashstructure.FormatV2, &hashstructure.HashOptions{
+	return hashstructure.Hash(s.ToSlice(), &hashstructure.HashOptions{
 		ZeroNil:      true,
 		SlicesAsSets: true,
 	})

syft/file/location.go

@@ -9,6 +9,17 @@ import (
 	"github.com/anchore/stereoscope/pkg/image"
 )
 
+const (
+	// VisibleAnnotationKey is the key used to indicate if the location is visible or not at runtime
+	VisibleAnnotationKey = "visible"
+
+	// HiddenAnnotation is the value used to indicate that the location is not visible at runtime because it was deleted
+	HiddenAnnotation = "false"
+
+	// VisibleAnnotation is the value used to indicate that the location is visible at runtime
+	VisibleAnnotation = "true"
+)
+
 // Location represents a path relative to a particular filesystem resolved to a specific file.Reference. This struct is used as a key
 // in content fetching to uniquely identify a file relative to a request (the AccessPath).
 type Location struct {
@@ -48,15 +59,18 @@ func (m *LocationMetadata) merge(other LocationMetadata) error {
 }
 
 func (l Location) WithAnnotation(key, value string) Location {
-	if l.LocationMetadata.Annotations == nil {
-		l.LocationMetadata.Annotations = map[string]string{}
+	if key == "" || value == "" {
+		return l
 	}
-	l.LocationMetadata.Annotations[key] = value
+	if l.Annotations == nil {
+		l.Annotations = map[string]string{}
+	}
+	l.Annotations[key] = value
 	return l
 }
 
 func (l Location) WithoutAnnotations() Location {
-	l.LocationMetadata.Annotations = map[string]string{}
+	l.Annotations = map[string]string{}
 
 	return l
 }

syft/file/location_set.go

@@ -3,7 +3,7 @@ package file
 import (
 	"sort"
 
-	"github.com/mitchellh/hashstructure/v2"
+	"github.com/gohugoio/hashstructure"
 
 	"github.com/anchore/syft/internal/log"
 )
@@ -91,7 +91,7 @@ func (s *LocationSet) Empty() bool {
 
 func (s LocationSet) Hash() (uint64, error) {
 	// access paths and filesystem IDs are not considered when hashing a location set, only the real paths
-	return hashstructure.Hash(s.CoordinateSet().Paths(), hashstructure.FormatV2, &hashstructure.HashOptions{
+	return hashstructure.Hash(s.CoordinateSet().Paths(), &hashstructure.HashOptions{
 		ZeroNil:      true,
 		SlicesAsSets: true,
 	})

syft/file/location_set_test.go

@@ -1,15 +1,17 @@
 package file
 
 import (
+	"sort"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
 	"github.com/stretchr/testify/require"
 
+	"github.com/anchore/syft/internal/evidence"
 	"github.com/anchore/syft/syft/artifact"
 )
 
-func TestLocationSet(t *testing.T) {
+func TestLocationSet_SortPaths(t *testing.T) {
 
 	etcHostsLinkVar := Location{
 		LocationData: LocationData{
@@ -93,6 +95,117 @@ func TestLocationSet(t *testing.T) {
 	}
 }
 
+func TestLocationSet_SortEvidence(t *testing.T) {
+	primaryEvidence := map[string]string{evidence.AnnotationKey: evidence.PrimaryAnnotation}
+	secondaryEvidence := map[string]string{evidence.AnnotationKey: evidence.SupportingAnnotation}
+
+	binPrimary := Location{
+		LocationData: LocationData{
+			Coordinates: Coordinates{
+				RealPath:     "/bin",
+				FileSystemID: "a",
+			},
+			AccessPath: "/usr/bin",
+		},
+		LocationMetadata: LocationMetadata{
+			Annotations: primaryEvidence,
+		},
+	}
+
+	binSecondary := Location{
+		LocationData: LocationData{
+			Coordinates: Coordinates{
+				RealPath:     "/bin",
+				FileSystemID: "a",
+			},
+			AccessPath: "/usr/bin",
+		},
+		LocationMetadata: LocationMetadata{
+			Annotations: secondaryEvidence,
+		},
+	}
+
+	binNoEvidence := Location{
+		LocationData: LocationData{
+			Coordinates: Coordinates{
+				RealPath:     "/bin",
+				FileSystemID: "a",
+			},
+			AccessPath: "/usr/bin",
+		},
+	}
+
+	etcHostsPrimary := Location{
+		LocationData: LocationData{
+			Coordinates: Coordinates{
+				RealPath:     "/etc/hosts",
+				FileSystemID: "a",
+			},
+			AccessPath: "/var/etc/hosts",
+		},
+		LocationMetadata: LocationMetadata{
+			Annotations: primaryEvidence,
+		},
+	}
+
+	etcHostsSecondary := Location{
+		LocationData: LocationData{
+			Coordinates: Coordinates{
+				RealPath:     "/etc/hosts",
+				FileSystemID: "a",
+			},
+			AccessPath: "/var/etc/hosts",
+		},
+		LocationMetadata: LocationMetadata{
+			Annotations: secondaryEvidence,
+		},
+	}
+
+	etcHostsNoEvidence := Location{
+		LocationData: LocationData{
+			Coordinates: Coordinates{
+				RealPath:     "/etc/hosts",
+				FileSystemID: "a",
+			},
+			AccessPath: "/var/etc/hosts",
+		},
+	}
+
+	tests := []struct {
+		name     string
+		input    []Location
+		expected []Location
+	}{
+		{
+			name: "sort primary, secondary, tertiary, no evidence",
+			input: []Location{
+				binNoEvidence, binPrimary, binSecondary,
+			},
+			expected: []Location{
+				binPrimary, binSecondary, binNoEvidence,
+			},
+		},
+		{
+			name: "sort by evidence, then path",
+			input: []Location{
+				etcHostsNoEvidence, etcHostsSecondary,
+				binSecondary, binNoEvidence,
+				binPrimary, etcHostsPrimary,
+			},
+			expected: []Location{
+				binPrimary, etcHostsPrimary, binSecondary, etcHostsSecondary, binNoEvidence, etcHostsNoEvidence,
+			},
+		},
+	}
+
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			sort.Sort(Locations(test.input))
+			assert.Equal(t, test.expected, test.input)
+		})
+	}
+}
+
 func TestLocationSet_Hash(t *testing.T) {
 	etcAlink := Location{
 		LocationData: LocationData{

syft/file/locations.go

@@ -1,5 +1,7 @@
 package file
 
+import "github.com/anchore/syft/internal/evidence"
+
 type Locations []Location
 
 func (l Locations) Len() int {
@@ -7,13 +9,25 @@ func (l Locations) Len() int {
 }
 
 func (l Locations) Less(i, j int) bool {
-	if l[i].RealPath == l[j].RealPath {
-		if l[i].AccessPath == l[j].AccessPath {
-			return l[i].FileSystemID < l[j].FileSystemID
+	liEvidence := l[i].Annotations[evidence.AnnotationKey]
+	ljEvidence := l[j].Annotations[evidence.AnnotationKey]
+	if liEvidence == ljEvidence {
+		if l[i].RealPath == l[j].RealPath {
+			if l[i].AccessPath == l[j].AccessPath {
+				return l[i].FileSystemID < l[j].FileSystemID
+			}
+			return l[i].AccessPath < l[j].AccessPath
 		}
-		return l[i].AccessPath < l[j].AccessPath
+		return l[i].RealPath < l[j].RealPath
 	}
-	return l[i].RealPath < l[j].RealPath
+	if liEvidence == evidence.PrimaryAnnotation {
+		return true
+	}
+	if ljEvidence == evidence.PrimaryAnnotation {
+		return false
+	}
+
+	return liEvidence > ljEvidence
 }
 
 func (l Locations) Swap(i, j int) {

syft/format/common/spdxhelpers/to_format_model.go

@@ -759,13 +759,18 @@ func toOtherLicenses(catalog *pkg.Collection) []*spdx.OtherLicense {
 	for _, id := range ids {
 		license := licenses[id]
 		value := license.Value
+		fullText := license.FullText
 		// handle cases where LicenseRef needs to be included in hasExtractedLicensingInfos
 		if license.Value == "" {
 			value, _ = strings.CutPrefix(license.ID, "LicenseRef-")
 		}
 		other := &spdx.OtherLicense{
 			LicenseIdentifier: license.ID,
-			ExtractedText:     value,
+		}
+		if fullText != "" {
+			other.ExtractedText = fullText
+		} else {
+			other.ExtractedText = value
 		}
 		customPrefix := spdxlicense.LicenseRefPrefix + helpers.SanitizeElementID(internallicenses.UnknownLicensePrefix)
 		if strings.HasPrefix(license.ID, customPrefix) {

syft/format/common/spdxhelpers/to_syft_model.go

@@ -361,6 +361,7 @@ func collectDocRelationships(spdxIDMap map[string]any, doc *spdx.Document) (out
 		from, fromOk := a.(pkg.Package)
 		toPackage, toPackageOk := b.(pkg.Package)
 		toLocation, toLocationOk := b.(file.Location)
+		//nolint:staticcheck
 		if !fromOk || !(toPackageOk || toLocationOk) {
 			log.Debugf("unable to find valid relationship mapping from SPDX, ignoring: (from: %+v) (to: %+v)", a, b)
 			continue
@@ -498,14 +499,15 @@ func extractPkgInfo(p *spdx.Package) pkgInfo {
 func toSyftPackage(p *spdx.Package) pkg.Package {
 	info := extractPkgInfo(p)
 	sP := &pkg.Package{
-		Type:     info.typ,
-		Name:     p.PackageName,
-		Version:  p.PackageVersion,
-		Licenses: pkg.NewLicenseSet(parseSPDXLicenses(p)...),
-		CPEs:     extractCPEs(p),
-		PURL:     purlValue(info.purl),
-		Language: info.lang,
-		Metadata: extractMetadata(p, info),
+		Type:             info.typ,
+		Name:             p.PackageName,
+		Version:          p.PackageVersion,
+		Licenses:         pkg.NewLicenseSet(parseSPDXLicenses(p)...),
+		CPEs:             extractCPEs(p),
+		PURL:             purlValue(info.purl),
+		Language:         info.lang,
+		Metadata:         extractMetadata(p, info),
+		SupplementalData: []any{artifact.ID(p.PackageSPDXIdentifier)},
 	}
 
 	sP.SetID()

syft/format/common/spdxhelpers/to_syft_model_test.go

@@ -589,12 +589,18 @@ func Test_convertToAndFromFormat(t *testing.T) {
 			got, err := ToSyftModel(doc)
 			require.NoError(t, err)
 
+			for _, p := range got.Artifacts.Packages.Sorted() {
+				// all decoders should be setting an ID of sorts here (another test will verify the correctness of the value)
+				assert.NotEmpty(t, p.SupplementalData)
+			}
+
 			if diff := cmp.Diff(&s, got,
 				cmpopts.IgnoreUnexported(artifact.Relationship{}),
 				cmpopts.IgnoreUnexported(file.LocationSet{}),
 				cmpopts.IgnoreUnexported(pkg.Collection{}),
 				cmpopts.IgnoreUnexported(pkg.Package{}),
 				cmpopts.IgnoreUnexported(pkg.LicenseSet{}),
+				cmpopts.IgnoreFields(pkg.Package{}, "SupplementalData"), // this is used by decoders to store additional data from the original format
 				cmpopts.IgnoreFields(sbom.Artifacts{}, "FileMetadata", "FileDigests"),
 			); diff != "" {
 				t.Fatalf("packages do not match:\n%s", diff)
@@ -664,7 +670,7 @@ func Test_directPackageFiles(t *testing.T) {
 		Packages: []*spdx.Package{
 			{
 				PackageName:           "some-package",
-				PackageSPDXIdentifier: "1",
+				PackageSPDXIdentifier: "1", // important!
 				PackageVersion:        "1.0.5",
 				Files: []*spdx.File{
 					{
@@ -686,10 +692,11 @@ func Test_directPackageFiles(t *testing.T) {
 	require.NoError(t, err)
 
 	p := pkg.Package{
-		Name:    "some-package",
-		Version: "1.0.5",
+		Name:             "some-package",
+		Version:          "1.0.5",
+		SupplementalData: []any{artifact.ID("1")}, // set by the decoders from the original element ID
 	}
-	p.SetID()
+	p.OverrideID("1") // the same as the spdxID on the package element
 	f := file.Location{
 		LocationData: file.LocationData{
 			Coordinates: file.Coordinates{

syft/format/cyclonedxjson/encoder_test.go

@@ -3,6 +3,7 @@ package cyclonedxjson
 import (
 	"bytes"
 	"flag"
+	"regexp"
 	"strings"
 	"testing"
 
@@ -116,6 +117,14 @@ func TestCycloneDxImageEncoder(t *testing.T) {
 func redactor(values ...string) testutil.Redactor {
 	return testutil.NewRedactions().
 		WithValuesRedacted(values...).
+		WithPatternRedactorSpec(
+			testutil.PatternReplacement{
+				// only the source component bom-ref (not package or other component bom-refs)
+				Search:  regexp.MustCompile(`"component": \{[^}]*"bom-ref":\s*"(?P<redact>.+)"[^}]*}`),
+				Groups:  []string{"redact"}, // use the regex to anchore the search, but only replace bytes within the capture group
+				Replace: "redacted",
+			},
+		).
 		WithPatternRedactors(
 			map[string]string{
 				// UUIDs
@@ -126,9 +135,6 @@ func redactor(values ...string) testutil.Redactor {
 
 				// image hashes
 				`sha256:[A-Fa-f0-9]{64}`: `sha256:redacted`,
-
-				// BOM refs
-				`"bom-ref":\s*"[^"]+"`: `"bom-ref":"redacted"`,
 			},
 		)
 }

syft/format/cyclonedxjson/test-fixtures/snapshot/TestCycloneDxDirectoryEncoder.golden

@@ -17,14 +17,14 @@
       ]
     },
     "component": {
-      "bom-ref":"redacted",
+      "bom-ref": "redacted",
       "type": "file",
       "name": "some/path"
     }
   },
   "components": [
     {
-      "bom-ref":"redacted",
+      "bom-ref": "4dd25c6ee16b729a",
       "type": "library",
       "name": "package-1",
       "version": "1.0.1",
@@ -61,7 +61,7 @@
       ]
     },
     {
-      "bom-ref":"redacted",
+      "bom-ref": "pkg:deb/debian/package-2@2.0.1?package-id=39392bb5e270f669",
       "type": "library",
       "name": "package-2",
       "version": "2.0.1",
@@ -91,7 +91,7 @@
       ]
     },
     {
-      "bom-ref":"redacted",
+      "bom-ref": "os:debian@1.2.3",
       "type": "operating-system",
       "name": "debian",
       "version": "1.2.3",

syft/format/cyclonedxjson/test-fixtures/snapshot/TestCycloneDxImageEncoder.golden

@@ -17,7 +17,7 @@
       ]
     },
     "component": {
-      "bom-ref":"redacted",
+      "bom-ref": "redacted",
       "type": "container",
       "name": "user-image-input",
       "version": "sha256:redacted"
@@ -25,7 +25,7 @@
   },
   "components": [
     {
-      "bom-ref":"redacted",
+      "bom-ref": "72567175418f73f8",
       "type": "library",
       "name": "package-1",
       "version": "1.0.1",
@@ -66,7 +66,7 @@
       ]
     },
     {
-      "bom-ref":"redacted",
+      "bom-ref": "pkg:deb/debian/package-2@2.0.1?package-id=4b756c6f6fb127a3",
       "type": "library",
       "name": "package-2",
       "version": "2.0.1",
@@ -100,7 +100,7 @@
       ]
     },
     {
-      "bom-ref":"redacted",
+      "bom-ref": "os:debian@1.2.3",
       "type": "operating-system",
       "name": "debian",
       "version": "1.2.3",

syft/format/cyclonedxxml/encoder_test.go

@@ -90,16 +90,24 @@ func TestCycloneDxImageEncoder(t *testing.T) {
 func redactor(values ...string) testutil.Redactor {
 	return testutil.NewRedactions().
 		WithValuesRedacted(values...).
+		WithPatternRedactorSpec(
+			testutil.PatternReplacement{
+				// only the source component bom-ref (not package or other component bom-refs)
+				Search:  regexp.MustCompile(`<component bom-ref="(?P<redact>[^"]*)" type="file">`),
+				Groups:  []string{"redact"}, // use the regex to anchore the search, but only replace bytes within the capture group
+				Replace: "redacted",
+			},
+		).
 		WithPatternRedactors(
 			map[string]string{
 				// dates
 				`([0-9]+)-(0[1-9]|1[012])-(0[1-9]|[12][0-9]|3[01])[Tt]([01][0-9]|2[0-3]):([0-5][0-9]):([0-5][0-9]|60)(\.[0-9]+)?(([Zz])|([+|\-]([01][0-9]|2[0-3]):[0-5][0-9]))`: `redacted`,
 
-				// image hashes and BOM refs
+				// image hashes
 				`sha256:[A-Za-z0-9]{64}`: `sha256:redacted`,
 
-				// serial numbers and BOM refs
-				`(serialNumber|bom-ref)="[^"]+"`: `$1="redacted"`,
+				// serial numbers
+				`(serialNumber)="[^"]+"`: `$1="redacted"`,
 			},
 		)
 }