fix: add panic recovery for license parse (#1839)

* fix: add panic recovery for license parse
---------
Signed-off-by: Christopher Phillips <christopher.phillips@anchore.com>

.github/workflows/benchmark-testing.yaml

@@ -33,7 +33,7 @@ jobs:
           OUTPUT="${OUTPUT//'%'/'%25'}"   # URL encode all '%' characters
           OUTPUT="${OUTPUT//$'\n'/'%0A'}" # URL encode all '\n' characters
           OUTPUT="${OUTPUT//$'\r'/'%0D'}" # URL encode all '\r' characters
-          echo "::set-output name=result::$OUTPUT"
+          echo "result=$OUTPUT" >> $GITHUB_OUTPUT
 
       - uses: actions/upload-artifact@v3
         with:

.github/workflows/codeql-analysis.yml

@@ -30,7 +30,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL

.github/workflows/release.yaml

@@ -151,12 +151,12 @@ jobs:
         with:
           status: ${{ job.status }}
           fields: repo,workflow,action,eventName
-          text: "A new Syft release has been published: https://github.com/anchore/syft/releases/tag/${{ github.ref_name }}"
+          text: "A new Syft release has been published: https://github.com/anchore/syft/releases/tag/${{ github.event.inputs.version }}"
         env:
           SLACK_WEBHOOK_URL: ${{ secrets.SLACK_TOOLBOX_WEBHOOK_URL }}
         if: ${{ success() }}
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v3
         with:
           name: artifacts
           path: dist/**/*

.github/workflows/update-bootstrap-tools.yml

@@ -16,7 +16,7 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: actions/setup-go@v3
+      - uses: actions/setup-go@v4
         with:
           go-version: ${{ env.GO_VERSION }}
           stable: ${{ env.GO_STABLE_VERSION }}
@@ -28,7 +28,7 @@ jobs:
           GORELEASER_LATEST_VERSION=$(go list -m -json github.com/goreleaser/goreleaser@latest 2>/dev/null | jq -r '.Version')
           GOSIMPORTS_LATEST_VERSION=$(go list -m -json github.com/rinchsan/gosimports@latest 2>/dev/null | jq -r '.Version')
           YAJSV_LATEST_VERSION=$(go list -m -json github.com/neilpa/yajsv@latest 2>/dev/null | jq -r '.Version')
-          COSIGN_LATEST_VERSION=$(go list -m -json github.com/sigstore/cosign@latest 2>/dev/null | jq -r '.Version')
+          COSIGN_LATEST_VERSION=$(go list -m -json github.com/sigstore/cosign/v2@latest 2>/dev/null | jq -r '.Version')
           GLOW_LATEST_VERSION=$(go list -m -json github.com/charmbracelet/glow@latest 2>/dev/null | jq -r '.Version')
           
           # update version variables in the Makefile
@@ -58,14 +58,14 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@v4
+      - uses: peter-evans/create-pull-request@v5
         with:
           signoff: true
           delete-branch: true
           branch: auto/latest-bootstrap-tools
           labels: dependencies
-          commit-message: 'Update syft bootstrap tools to latest versions.'
-          title: 'Update syft bootstrap tools to latest versions.'
+          commit-message: 'chore(deps): update bootstrap tools to latest versions'
+          title: 'chore(deps): update bootstrap tools to latest versions'
           body: |
             - [golangci-lint ${{ steps.latest-versions.outputs.GOLANGCILINT }}](https://github.com/golangci/golangci-lint/releases/tag/${{ steps.latest-versions.outputs.GOLANGCILINT }})
             - [bouncer ${{ steps.latest-versions.outputs.BOUNCER }}](https://github.com/wagoodman/go-bouncer/releases/tag/${{ steps.latest-versions.outputs.BOUNCER }})

.github/workflows/update-stereoscope-release.yml

@@ -16,7 +16,7 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: actions/setup-go@v3
+      - uses: actions/setup-go@v4
         with:
           go-version: ${{ env.GO_VERSION }}
           stable: ${{ env.GO_STABLE_VERSION }}
@@ -29,7 +29,7 @@ jobs:
           go mod tidy
 
           # export the version for use with create-pull-request
-          echo "::set-output name=LATEST_VERSION::$LATEST_VERSION"
+          echo "LATEST_VERSION=$LATEST_VERSION" >> $GITHUB_OUTPUT
         id: latest-version
 
       - uses: tibdex/github-app-token@v1
@@ -38,14 +38,14 @@ jobs:
           app_id: ${{ secrets.TOKEN_APP_ID }}
           private_key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
 
-      - uses: peter-evans/create-pull-request@v4
+      - uses: peter-evans/create-pull-request@v5
         with:
           signoff: true
           delete-branch: true
-          branch: auto/latest
+          branch: auto/latest-stereoscope
           labels: dependencies
-          commit-message: "Update Stereoscope to ${{ steps.latest-version.outputs.LATEST_VERSION }}"
-          title: "Update Stereoscope to ${{ steps.latest-version.outputs.LATEST_VERSION }}"
+          commit-message: "chore(deps): update stereoscope to ${{ steps.latest-version.outputs.LATEST_VERSION }}"
+          title: "chore(deps): update stereoscope to ${{ steps.latest-version.outputs.LATEST_VERSION }}"
           body: |
             Update Stereoscope to ${{ steps.latest-version.outputs.LATEST_VERSION }}
           token: ${{ steps.generate-token.outputs.token }}

.github/workflows/validations.yaml

@@ -34,26 +34,35 @@ jobs:
         uses: ./.github/actions/bootstrap
 
       - name: Restore Java test-fixture cache
-        id: unit-java-cache
         uses: actions/cache@v3
         with:
           path: syft/pkg/cataloger/java/test-fixtures/java-builds/packages
-          key: ${{ runner.os }}-unit-java-cache-${{ hashFiles( 'syft/pkg/cataloger/java/test-fixtures/java-builds/packages.fingerprint' ) }}
+          key: ${{ runner.os }}-unit-java-cache-${{ hashFiles( 'syft/pkg/cataloger/java/test-fixtures/java-builds/cache.fingerprint' ) }}
 
       - name: Restore RPM test-fixture cache
-        id: unit-rpm-cache
         uses: actions/cache@v3
         with:
           path: syft/pkg/cataloger/rpm/test-fixtures/rpms
           key: ${{ runner.os }}-unit-rpm-cache-${{ hashFiles( 'syft/pkg/cataloger/rpm/test-fixtures/rpms.fingerprint' ) }}
 
       - name: Restore go binary test-fixture cache
-        id: unit-go-binary-cache
         uses: actions/cache@v3
         with:
           path: syft/pkg/cataloger/golang/test-fixtures/archs/binaries
           key: ${{ runner.os }}-unit-go-binaries-cache-${{ hashFiles( 'syft/pkg/cataloger/golang/test-fixtures/archs/binaries.fingerprint' ) }}
 
+      - name: Restore binary cataloger test-fixture cache
+        uses: actions/cache@v3
+        with:
+          path: syft/pkg/cataloger/binary/test-fixtures/classifiers/dynamic
+          key: ${{ runner.os }}-unit-binary-cataloger-cache-${{ hashFiles( 'syft/pkg/cataloger/binary/test-fixtures/cache.fingerprint' ) }}
+
+      - name: Restore Kernel test-fixture cache
+        uses: actions/cache@v3
+        with:
+          path: syft/pkg/cataloger/kernel/test-fixtures/cache
+          key: ${{ runner.os }}-unit-kernel-cache-${{ hashFiles( 'syft/pkg/cataloger/kernel/test-fixtures/cache.fingerprint' ) }}
+
       - name: Run unit tests
         run: make unit
 

DEVELOPING.md

@@ -15,7 +15,7 @@ After cloning the following step can help you get setup:
 	- this command `go run cmd/syft/main.go alpine:latest` will compile and run syft against `alpine:latest`
 5. view the README or syft help output for more output options
 
-The main make tasks for common static analysis and testing are `lint`, `lint-fix`, `unit`, `integration`, and `cli`.
+The main make tasks for common static analysis and testing are `lint`, `format`, `lint-fix`, `unit`, `integration`, and `cli`.
 
 See `make help` for all the current make tasks.
 
@@ -119,7 +119,15 @@ sequenceDiagram
 Catalogers are the way in which syft is able to identify and construct packages given some amount of source metadata.
 For example, Syft can locate and process `package-lock.json` files when performing filesystem scans. 
 See: [how to specify file globs](https://github.com/anchore/syft/tree/v0.70.0/syft/pkg/cataloger/javascript/cataloger.go#L16-L21)
-and an implementation of the [package-lock.json parser](https://github.com/anchore/syft/tree/v0.70.0/syft/pkg/cataloger/javascript/cataloger.go#L16-L21) fora quick review.
+and an implementation of the [package-lock.json parser](https://github.com/anchore/syft/tree/v0.70.0/syft/pkg/cataloger/javascript/cataloger.go#L16-L21) for a quick review.
+
+From a high level catalogers have the following properties:
+
+- They are independent from one another. The java cataloger has no idea of the processes, assumptions, or results of the python cataloger, for example.
+
+- They do not know what source is being analyzed. Are we analyzing a local directory? an image? if so, the squashed representation or all layers? The catalogers do not know the answers to these questions. Only that there is an interface to query for file paths and contents from an underlying "source" being scanned.
+
+- Packages created by the cataloger should not be mutated after they are created. There is one exception made for adding CPEs to a package after the cataloging phase, but that will most likely be moved back into the cataloger in the future.
 
 #### Building a new Cataloger
 

Makefile

@@ -4,21 +4,21 @@ TEMP_DIR := ./.tmp
 # Command templates #################################
 LINT_CMD := $(TEMP_DIR)/golangci-lint run --tests=false
 GOIMPORTS_CMD := $(TEMP_DIR)/gosimports -local github.com/anchore
-RELEASE_CMD := $(TEMP_DIR)/goreleaser release --rm-dist
+RELEASE_CMD := $(TEMP_DIR)/goreleaser release --clean
 SNAPSHOT_CMD := $(RELEASE_CMD) --skip-publish --skip-sign --snapshot
 CHRONICLE_CMD = $(TEMP_DIR)/chronicle
 GLOW_CMD = $(TEMP_DIR)/glow
 
 # Tool versions #################################
-GOLANGCILINT_VERSION := v1.51.1
-GOSIMPORTS_VERSION := v0.3.5
+GOLANGCILINT_VERSION := v1.52.2
+GOSIMPORTS_VERSION := v0.3.8
 BOUNCER_VERSION := v0.4.0
 CHRONICLE_VERSION := v0.6.0
-GORELEASER_VERSION := v1.15.2
+GORELEASER_VERSION := v1.18.2
 YAJSV_VERSION := v1.4.1
-COSIGN_VERSION := v1.13.1
+COSIGN_VERSION := v2.0.2
 QUILL_VERSION := v0.2.0
-GLOW_VERSION := v1.5.0
+GLOW_VERSION := v1.5.1
 
 # Formatting variables #################################
 BOLD := $(shell tput -T linux bold)
@@ -90,7 +90,7 @@ bootstrap-tools: $(TEMP_DIR)
 	# the only difference between goimports and gosimports is that gosimports removes extra whitespace between import blocks (see https://github.com/golang/go/issues/20818)
 	GOBIN="$(realpath $(TEMP_DIR))" go install github.com/rinchsan/gosimports/cmd/gosimports@$(GOSIMPORTS_VERSION)
 	GOBIN="$(realpath $(TEMP_DIR))" go install github.com/neilpa/yajsv@$(YAJSV_VERSION)
-	GOBIN="$(realpath $(TEMP_DIR))" go install github.com/sigstore/cosign/cmd/cosign@$(COSIGN_VERSION)
+	GOBIN="$(realpath $(TEMP_DIR))" go install github.com/sigstore/cosign/v2/cmd/cosign@$(COSIGN_VERSION)
 	GOBIN="$(realpath $(TEMP_DIR))" go install github.com/charmbracelet/glow@$(GLOW_VERSION)
 
 .PHONY: bootstrap-go
@@ -118,14 +118,18 @@ lint:  ## Run gofmt + golangci lint checks
 	$(eval MALFORMED_FILENAMES := $(shell find . | grep -e ':'))
 	@bash -c "[[ '$(MALFORMED_FILENAMES)' == '' ]] || (printf '\nfound unsupported filename characters:\n$(MALFORMED_FILENAMES)\n\n' && false)"
 
-.PHONY: lint-fix
-lint-fix:  ## Auto-format all source code + run golangci lint fixers
-	$(call title,Running lint fixers)
+.PHONY: format
+format:  ## Auto-format all source code
+	$(call title,Running formatters)
 	gofmt -w -s .
 	$(GOIMPORTS_CMD) -w .
-	$(LINT_CMD) --fix
 	go mod tidy
 
+.PHONY: lint-fix
+lint-fix: format  ## Auto-format all source code + run golangci lint fixers
+	$(call title,Running lint fixers)
+	$(LINT_CMD) --fix
+
 .PHONY: check-licenses
 check-licenses:  ## Ensure transitive dependencies are compliant with the current license policy
 	$(call title,Checking for license compliance)
@@ -189,9 +193,13 @@ fingerprints:
 	cd test/integration/test-fixtures && \
 		make cache.fingerprint
 
+	# for BINARY test fixtures
+	cd syft/pkg/cataloger/binary/test-fixtures && \
+		make cache.fingerprint
+
 	# for JAVA BUILD test fixtures
 	cd syft/pkg/cataloger/java/test-fixtures/java-builds && \
-		make packages.fingerprint
+		make cache.fingerprint
 
 	# for GO BINARY test fixtures
 	cd syft/pkg/cataloger/golang/test-fixtures/archs && \
@@ -201,6 +209,10 @@ fingerprints:
 	cd syft/pkg/cataloger/rpm/test-fixtures && \
 		make rpms.fingerprint
 
+	# for Kernel test fixtures
+	cd syft/pkg/cataloger/kernel/test-fixtures && \
+		make cache.fingerprint
+
 	# for INSTALL integration test fixtures
 	cd test/install && \
 		make cache.fingerprint
@@ -214,6 +226,7 @@ fixtures:
 	$(call title,Generating test fixtures)
 	cd syft/pkg/cataloger/java/test-fixtures/java-builds && make
 	cd syft/pkg/cataloger/rpm/test-fixtures && make
+	cd syft/pkg/cataloger/binary/test-fixtures && make
 
 .PHONY: show-test-image-cache
 show-test-image-cache:  ## Show all docker and image tar cache
@@ -247,6 +260,11 @@ install-test-ci-mac: $(SNAPSHOT_DIR)
 	cd test/install && \
 		make ci-test-mac
 
+.PHONY: generate-compare-file
+generate-compare-file:
+	$(call title,Generating compare test file)
+	go run ./cmd/syft $(COMPARE_TEST_IMAGE) -o json > $(COMPARE_DIR)/test-fixtures/acceptance-centos-8.2.2004.json
+
 # note: we cannot clean the snapshot directory since the pipeline builds the snapshot separately
 .PHONY: compare-mac
 compare-mac: $(TEMP_DIR) $(SNAPSHOT_DIR)  ## Run compare tests on build snapshot binaries and packages (Mac)

README.md

@@ -42,9 +42,12 @@ For commercial support options with Syft or Grype, please [contact Anchore](http
 - Erlang (rebar3)
 - Go (go.mod, Go binaries)
 - Haskell (cabal, stack)
-- Java (jar, ear, war, par, sar, native-image)
+- Java (jar, ear, war, par, sar, nar, native-image)
 - JavaScript (npm, yarn)
 - Jenkins Plugins (jpi, hpi)
+- Linux kernel archives (vmlinz)
+- Linux kernel modules (ko)
+- Nix (outputs in /nix/store)
 - PHP (composer)
 - Python (wheel, egg, poetry, requirements.txt)
 - Red Hat (rpm)
@@ -110,9 +113,7 @@ The above output includes only software that is visible in the container (i.e.,
 syft <image> --scope all-layers
 ```
 
-
-
-## Supported sources
+### Supported sources
 
 Syft can generate a SBOM from a variety of sources:
 
@@ -141,45 +142,65 @@ file:path/to/yourproject/file            read directly from a path on disk (any
 registry:yourrepo/yourimage:tag          pull image directly from a registry (no container runtime required)
 ```
 
-#### Default Cataloger Configuration by scan type
+If an image source is not provided and cannot be detected from the given reference it is assumed the image should be pulled from the Docker daemon.
+If docker is not present, then the Podman daemon is attempted next, followed by reaching out directly to the image registry last.
+
+
+This default behavior can be overridden with the `default-image-pull-source` configuration option (See [Configuration](https://github.com/anchore/syft#configuration) for more details).
+
+### Default Cataloger Configuration by scan type
 
 ##### Image Scanning:
 - alpmdb
-- rpmdb
-- dpkgdb
 - apkdb
-- portage
-- ruby-gemspec
-- python-package
-- php-composer-installed Cataloger
-- javascript-package
-- java
-- go-module-binary
+- binary
 - dotnet-deps
+- dpkgdb
+- go-module-binary
+- graalvm-native-image
+- java
+- javascript-package
+- linux-kernel
+- nix-store
+- php-composer-installed
+- portage
+- python-package
+- rpm-db
+- ruby-gemspec
+- sbom
 
 ##### Directory Scanning:
 - alpmdb
 - apkdb
-- dpkgdb
-- portage
-- rpmdb
-- ruby-gemfile
-- python-index
-- python-package
-- php-composer-lock
-- javascript-lock
-- java
-- java-pom
-- go-module-binary
-- go-mod-file
-- rust-cargo-lock
-- dartlang-lock
-- dotnet-deps
+- binary
 - cocoapods
 - conan
-- hackage
+- dartlang-lock
+- dotnet-deps
+- dpkgdb
+- elixir-mix-lock
+- erlang-rebar-lock
+- go-mod-file
+- go-module-binary
+- graalvm-native-image
+- haskell
+- java
+- java-gradle-lockfile
+- java-pom
+- javascript-lock
+- linux-kernel
+- nix-store
+- php-composer-lock
+- portage
+- python-index
+- python-package
+- rpm-db
+- rpm-file
+- ruby-gemfile
+- rust-cargo-lock
+- sbom
 
-#### Non Default:
+##### Non Default:
 - cargo-auditable-binary
 
 ### Excluding file paths
@@ -213,8 +234,10 @@ Where the `formats` available are:
 - `text`: A row-oriented, human-and-machine-friendly output.
 - `cyclonedx-xml`: A XML report conforming to the [CycloneDX 1.4 specification](https://cyclonedx.org/specification/overview/).
 - `cyclonedx-json`: A JSON report conforming to the [CycloneDX 1.4 specification](https://cyclonedx.org/specification/overview/).
-- `spdx-tag-value`: A tag-value formatted report conforming to the [SPDX 2.2 specification](https://spdx.github.io/spdx-spec/).
-- `spdx-json`: A JSON report conforming to the [SPDX 2.2 JSON Schema](https://github.com/spdx/spdx-spec/blob/v2.2/schemas/spdx-schema.json).
+- `spdx-tag-value`: A tag-value formatted report conforming to the [SPDX 2.3 specification](https://spdx.github.io/spdx-spec/v2.3/).
+- `spdx-tag-value@2.2`: A tag-value formatted report conforming to the [SPDX 2.2 specification](https://spdx.github.io/spdx-spec/v2.2.2/).
+- `spdx-json`: A JSON report conforming to the [SPDX 2.3 JSON Schema](https://github.com/spdx/spdx-spec/blob/v2.3/schemas/spdx-schema.json).
+- `spdx-json@2.2`: A JSON report conforming to the [SPDX 2.2 JSON Schema](https://github.com/spdx/spdx-spec/blob/v2.2/schemas/spdx-schema.json).
 - `github`: A JSON report conforming to GitHub's dependency snapshot format.
 - `table`: A columnar summary (default).
 - `template`: Lets the user specify the output format. See ["Using templates"](#using-templates) below.
@@ -252,6 +275,8 @@ Which would produce output like:
 
 Syft also includes a vast array of utility templating functions from [sprig](http://masterminds.github.io/sprig/) apart from the default Golang [text/template](https://pkg.go.dev/text/template#hdr-Functions) to allow users to customize the output format.
 
+Lastly, Syft has custom templating functions defined in `./syft/format/template/encoder.go` to help parse the passed-in JSON structs.
+
 ## Multiple outputs
 
 Syft can also output _multiple_ files in differing formats by appending
@@ -391,7 +416,7 @@ Certificate subject:  test.email@testdomain.com
 Certificate issuer URL:  https://accounts.google.com
 ```
 
-#### Local private key support
+### Local private key support
 
 To generate an SBOM attestation for a container image using a local private key:
 ```
@@ -434,6 +459,10 @@ file: ""
 # same as SYFT_CHECK_FOR_APP_UPDATE env var
 check-for-app-update: true
 
+# allows users to specify which image source should be used to generate the sbom
+# valid values are: registry, docker, podman
+default-image-pull-source: ""
+
 # a list of globs to exclude from scanning. same as --exclude ; for example:
 # exclude:
 #   - "/etc/**"
@@ -447,26 +476,39 @@ platform: ""
 # set the list of package catalogers to use when generating the SBOM
 # default = empty (cataloger set determined automatically by the source type [image or file/directory])
 # catalogers:
-#   - ruby-gemfile
-#   - ruby-gemspec
-#   - python-index
-#   - python-package
-#   - javascript-lock
-#   - javascript-package
-#   - php-composer-installed
-#   - php-composer-lock
-#   - alpmdb
-#   - dpkgdb
-#   - rpmdb
-#   - java
-#   - apkdb
-#   - go-module-binary
-#   - go-mod-file
-#   - dartlang-lock
-#   - rust
-#   - dotnet-deps
-# rust-audit-binary scans Rust binaries built with https://github.com/Shnatsel/rust-audit
-#   - rust-audit-binary
+#   - alpmdb-cataloger
+#   - apkdb-cataloger
+#   - binary-cataloger
+#   - cargo-auditable-binary-cataloger
+#   - cocoapods-cataloger
+#   - conan-cataloger
+#   - dartlang-lock-cataloger
+#   - dotnet-deps-cataloger
+#   - dpkgdb-cataloger
+#   - elixir-mix-lock-cataloger
+#   - erlang-rebar-lock-cataloger
+#   - go-mod-file-cataloger
+#   - go-module-binary-cataloger
+#   - graalvm-native-image-cataloger
+#   - haskell-cataloger
+#   - java-cataloger
+#   - java-gradle-lockfile-cataloger
+#   - java-pom-cataloger
+#   - javascript-lock-cataloger
+#   - javascript-package-cataloger
+#   - linux-kernel-cataloger
+#   - nix-store-cataloger
+#   - php-composer-installed-cataloger
+#   - php-composer-lock-cataloger
+#   - portage-cataloger
+#   - python-index-cataloger
+#   - python-package-cataloger
+#   - rpm-db-cataloger
+#   - rpm-file-cataloger
+#   - ruby-gemfile-cataloger
+#   - ruby-gemspec-cataloger
+#   - rust-cargo-lock-cataloger
+#   - sbom-cataloger
 catalogers:
 
 # cataloging packages is exposed through the packages and power-user subcommands
@@ -492,6 +534,35 @@ package:
     # same as -s ; SYFT_PACKAGE_CATALOGER_SCOPE env var
     scope: "squashed"
 
+golang:
+   # search for go package licences in the GOPATH of the system running Syft, note that this is outside the
+   # container filesystem and potentially outside the root of a local directory scan
+   # SYFT_GOLANG_SEARCH_LOCAL_MOD_CACHE_LICENSES env var
+   search-local-mod-cache-licenses: false
+   
+   # specify an explicit go mod cache directory, if unset this defaults to $GOPATH/pkg/mod or $HOME/go/pkg/mod
+   # SYFT_GOLANG_LOCAL_MOD_CACHE_DIR env var
+   local-mod-cache-dir: ""
+
+   # search for go package licences by retrieving the package from a network proxy
+   # SYFT_GOLANG_SEARCH_REMOTE_LICENSES env var
+   search-remote-licenses: false
+
+   # remote proxy to use when retrieving go packages from the network,
+   # if unset this defaults to $GOPROXY followed by https://proxy.golang.org
+   # SYFT_GOLANG_PROXY env var
+   proxy: ""
+
+   # specifies packages which should not be fetched by proxy
+   # if unset this defaults to $GONOPROXY
+   # SYFT_GOLANG_NOPROXY env var
+   no-proxy: ""
+
+linux-kernel:
+   # whether to catalog linux kernel modules found within lib/modules/** directories
+   # SYFT_LINUX_KERNEL_CATALOG_MODULES env var
+   catalog-modules: true
+
 # cataloging file contents is exposed through the power-user subcommand
 file-contents:
   cataloger:

cmd/syft/cli/attest/attest.go

@@ -5,6 +5,7 @@ import (
 	"fmt"
 	"os"
 	"os/exec"
+	"strings"
 
 	"github.com/wagoodman/go-partybus"
 	"github.com/wagoodman/go-progress"
@@ -26,7 +27,7 @@ import (
 	"github.com/anchore/syft/syft/source"
 )
 
-func Run(ctx context.Context, app *config.Application, args []string) error {
+func Run(_ context.Context, app *config.Application, args []string) error {
 	err := ValidateOutputOptions(app)
 	if err != nil {
 		return err
@@ -46,7 +47,7 @@ func Run(ctx context.Context, app *config.Application, args []string) error {
 	// could be an image or a directory, with or without a scheme
 	// TODO: validate that source is image
 	userInput := args[0]
-	si, err := source.ParseInputWithName(userInput, app.Platform, true, app.Name)
+	si, err := source.ParseInputWithName(userInput, app.Platform, app.Name, app.DefaultImagePullSource)
 	if err != nil {
 		return fmt.Errorf("could not generate source input for packages command: %w", err)
 	}
@@ -130,7 +131,21 @@ func execWorker(app *config.Application, si source.Input, writer sbom.Writer) <-
 				return
 			}
 
-			args := []string{"attest", si.UserInput, "--predicate", f.Name()}
+			// Select Cosign predicate type based on defined output type
+			// As orientation, check: https://github.com/sigstore/cosign/blob/main/pkg/cosign/attestation/attestation.go
+			var predicateType string
+			switch strings.ToLower(o) {
+			case "cyclonedx-json":
+				predicateType = "cyclonedx"
+			case "spdx-tag-value":
+				predicateType = "spdx"
+			case "spdx-json":
+				predicateType = "spdxjson"
+			default:
+				predicateType = "custom"
+			}
+
+			args := []string{"attest", si.UserInput, "--predicate", f.Name(), "--type", predicateType}
 			if app.Attest.Key != "" {
 				args = append(args, "--key", app.Attest.Key)
 			}
@@ -152,7 +167,7 @@ func execWorker(app *config.Application, si source.Input, writer sbom.Writer) <-
 			}
 			defer w.Close()
 
-			b := &busWriter{r: r, w: w, mon: &progress.Manual{N: -1}}
+			b := &busWriter{r: r, w: w, mon: progress.NewManual(-1)}
 			execCmd.Stdout = b
 			execCmd.Stderr = b
 			defer b.mon.SetCompleted()
@@ -160,7 +175,7 @@ func execWorker(app *config.Application, si source.Input, writer sbom.Writer) <-
 			// attest the SBOM
 			err = execCmd.Run()
 			if err != nil {
-				b.mon.Err = err
+				b.mon.SetError(err)
 				errs <- fmt.Errorf("unable to attest SBOM: %w", err)
 				return
 			}

cmd/syft/cli/commands.go

@@ -55,6 +55,7 @@ func New() (*cobra.Command, error) {
 
 	// rootCmd is currently an alias for the packages command
 	rootCmd := &cobra.Command{
+		Use:           fmt.Sprintf("%s [SOURCE]", internal.ApplicationName),
 		Short:         packagesCmd.Short,
 		Long:          packagesCmd.Long,
 		Args:          packagesCmd.Args,

cmd/syft/cli/eventloop/tasks.go

@@ -46,14 +46,11 @@ func generateCatalogPackagesTask(app *config.Application) (Task, error) {
 
 	task := func(results *sbom.Artifacts, src *source.Source) ([]artifact.Relationship, error) {
 		packageCatalog, relationships, theDistro, err := syft.CatalogPackages(src, app.ToCatalogerConfig())
-		if err != nil {
-			return nil, err
-		}
 
-		results.PackageCatalog = packageCatalog
+		results.Packages = packageCatalog
 		results.LinuxDistribution = theDistro
 
-		return relationships, nil
+		return relationships, err
 	}
 
 	return task, nil

cmd/syft/cli/options/attest.go

@@ -17,6 +17,7 @@ func (o AttestOptions) AddFlags(cmd *cobra.Command, v *viper.Viper) error {
 	return bindAttestConfigOptions(cmd.Flags(), v)
 }
 
+//nolint:revive
 func bindAttestConfigOptions(flags *pflag.FlagSet, v *viper.Viper) error {
 	if err := v.BindPFlag("attest.key", flags.Lookup("key")); err != nil {
 		return err

cmd/syft/cli/options/fulcio.go

@@ -31,6 +31,7 @@ func (o *FulcioOptions) AddFlags(cmd *cobra.Command, v *viper.Viper) error {
 	return bindFulcioConfigOptions(cmd.Flags(), v)
 }
 
+//nolint:revive
 func bindFulcioConfigOptions(flags *pflag.FlagSet, v *viper.Viper) error {
 	if err := v.BindPFlag("attest.fulcio-url", flags.Lookup("fulcio-url")); err != nil {
 		return err

cmd/syft/cli/options/oidc.go

@@ -31,6 +31,7 @@ func (o *OIDCOptions) AddFlags(cmd *cobra.Command, v *viper.Viper) error {
 	return bindOIDCConfigOptions(cmd.Flags(), v)
 }
 
+//nolint:revive
 func bindOIDCConfigOptions(flags *pflag.FlagSet, v *viper.Viper) error {
 	if err := v.BindPFlag("attest.oidc-issuer", flags.Lookup("oidc-issuer")); err != nil {
 		return err

cmd/syft/cli/options/packages.go

@@ -54,6 +54,7 @@ func (o *PackagesOptions) AddFlags(cmd *cobra.Command, v *viper.Viper) error {
 	return bindPackageConfigOptions(cmd.Flags(), v)
 }
 
+//nolint:revive
 func bindPackageConfigOptions(flags *pflag.FlagSet, v *viper.Viper) error {
 	// Formatting & Input options //////////////////////////////////////////////
 

cmd/syft/cli/options/rekor.go

@@ -22,6 +22,7 @@ func (o *RekorOptions) AddFlags(cmd *cobra.Command, v *viper.Viper) error {
 	return bindRekorConfigOptions(cmd.Flags(), v)
 }
 
+//nolint:revive
 func bindRekorConfigOptions(flags *pflag.FlagSet, v *viper.Viper) error {
 	// TODO: config re-design
 	if err := v.BindPFlag("attest.rekor-url", flags.Lookup("rekor-url")); err != nil {

cmd/syft/cli/options/root.go

@@ -22,6 +22,7 @@ func (o *RootOptions) AddFlags(cmd *cobra.Command, v *viper.Viper) error {
 	return bindRootConfigOptions(cmd.PersistentFlags(), v)
 }
 
+//nolint:revive
 func bindRootConfigOptions(flags *pflag.FlagSet, v *viper.Viper) error {
 	if err := v.BindPFlag("config", flags.Lookup("config")); err != nil {
 		return err

cmd/syft/cli/options/version.go

@@ -11,7 +11,7 @@ type VersionOptions struct {
 
 var _ Interface = (*VersionOptions)(nil)
 
-func (o *VersionOptions) AddFlags(cmd *cobra.Command, v *viper.Viper) error {
+func (o *VersionOptions) AddFlags(cmd *cobra.Command, _ *viper.Viper) error {
 	cmd.Flags().StringVarP(&o.Output, "output", "o", "text", "format to show version information (available=[text, json])")
 	return nil
 }

cmd/syft/cli/packages.go

@@ -18,8 +18,10 @@ const (
   {{.appName}} {{.command}} alpine:latest -o json                        show all possible cataloging details
   {{.appName}} {{.command}} alpine:latest -o cyclonedx                   show a CycloneDX formatted SBOM
   {{.appName}} {{.command}} alpine:latest -o cyclonedx-json              show a CycloneDX JSON formatted SBOM
-  {{.appName}} {{.command}} alpine:latest -o spdx                        show a SPDX 2.2 Tag-Value formatted SBOM
-  {{.appName}} {{.command}} alpine:latest -o spdx-json                   show a SPDX 2.2 JSON formatted SBOM
+  {{.appName}} {{.command}} alpine:latest -o spdx                        show a SPDX 2.3 Tag-Value formatted SBOM
+  {{.appName}} {{.command}} alpine:latest -o spdx@2.2                    show a SPDX 2.2 Tag-Value formatted SBOM
+  {{.appName}} {{.command}} alpine:latest -o spdx-json                   show a SPDX 2.3 JSON formatted SBOM
+  {{.appName}} {{.command}} alpine:latest -o spdx-json@2.2               show a SPDX 2.2 JSON formatted SBOM
   {{.appName}} {{.command}} alpine:latest -vv                            show verbose debug information
   {{.appName}} {{.command}} alpine:latest -o template -t my_format.tmpl  show a SBOM formatted according to given template file
 

cmd/syft/cli/packages/packages.go

@@ -23,7 +23,7 @@ import (
 	"github.com/anchore/syft/syft/source"
 )
 
-func Run(ctx context.Context, app *config.Application, args []string) error {
+func Run(_ context.Context, app *config.Application, args []string) error {
 	err := ValidateOutputOptions(app)
 	if err != nil {
 		return err
@@ -42,7 +42,7 @@ func Run(ctx context.Context, app *config.Application, args []string) error {
 
 	// could be an image or a directory, with or without a scheme
 	userInput := args[0]
-	si, err := source.ParseInputWithName(userInput, app.Platform, true, app.Name)
+	si, err := source.ParseInputWithName(userInput, app.Platform, app.Name, app.DefaultImagePullSource)
 	if err != nil {
 		return fmt.Errorf("could not generate source input for packages command: %w", err)
 	}

cmd/syft/cli/poweruser/poweruser.go

@@ -47,7 +47,7 @@ func Run(_ context.Context, app *config.Application, args []string) error {
 	}()
 
 	userInput := args[0]
-	si, err := source.ParseInputWithName(userInput, app.Platform, true, app.Name)
+	si, err := source.ParseInputWithName(userInput, app.Platform, app.Name, app.DefaultImagePullSource)
 	if err != nil {
 		return fmt.Errorf("could not generate source input for packages command: %w", err)
 	}

cmd/syft/cli/version.go

@@ -15,7 +15,7 @@ import (
 	"github.com/anchore/syft/internal/version"
 )
 
-func Version(v *viper.Viper, app *config.Application) *cobra.Command {
+func Version(v *viper.Viper, _ *config.Application) *cobra.Command {
 	o := &options.VersionOptions{}
 	cmd := &cobra.Command{
 		Use:   "version",

cmd/syft/main.go

@@ -3,6 +3,8 @@ package main
 import (
 	"log"
 
+	_ "modernc.org/sqlite"
+
 	"github.com/anchore/syft/cmd/syft/cli"
 )
 

go.mod

@@ -16,7 +16,7 @@ require (
 	github.com/go-test/deep v1.1.0
 	github.com/google/go-cmp v0.5.9
 	github.com/google/uuid v1.3.0
-	github.com/gookit/color v1.5.2
+	github.com/gookit/color v1.5.3
 	github.com/hashicorp/go-multierror v1.1.1
 	github.com/jinzhu/copier v0.3.5
 	github.com/mgutz/ansi v0.0.0-20200706080929-d51e80ef957d // indirect
@@ -30,88 +30,104 @@ require (
 	// pinned to pull in 386 arch fix: https://github.com/scylladb/go-set/commit/cc7b2070d91ebf40d233207b633e28f5bd8f03a5
 	github.com/scylladb/go-set v1.0.3-0.20200225121959-cc7b2070d91e
 	github.com/sergi/go-diff v1.3.1
-	github.com/sirupsen/logrus v1.9.0
-	github.com/spdx/tools-golang v0.5.0-rc1
-	github.com/spf13/afero v1.9.3
-	github.com/spf13/cobra v1.6.1
+	github.com/sirupsen/logrus v1.9.2
+	github.com/spdx/tools-golang v0.5.0
+	github.com/spf13/afero v1.9.5
+	github.com/spf13/cobra v1.7.0
 	github.com/spf13/pflag v1.0.5
 	github.com/spf13/viper v1.15.0
-	github.com/stretchr/testify v1.8.1
+	github.com/stretchr/testify v1.8.3
 	github.com/vifraa/gopom v0.2.1
 	github.com/wagoodman/go-partybus v0.0.0-20210627031916-db1f5573bbc5
-	github.com/wagoodman/go-progress v0.0.0-20200731105512-1020f39e6240
+	github.com/wagoodman/go-progress v0.0.0-20230301185719-21920a456ad5
 	github.com/wagoodman/jotframe v0.0.0-20211129225309-56b0d0a4aebb
 	github.com/xeipuuv/gojsonschema v1.2.0
-	golang.org/x/mod v0.8.0
-	golang.org/x/net v0.7.0
-	golang.org/x/term v0.5.0
+	golang.org/x/mod v0.10.0
+	golang.org/x/net v0.10.0
+	golang.org/x/term v0.8.0
 	gopkg.in/yaml.v2 v2.4.0
 )
 
 require (
-	github.com/CycloneDX/cyclonedx-go v0.7.1-0.20221222100750-41a1ac565cce
+	github.com/CycloneDX/cyclonedx-go v0.7.1
+	github.com/Masterminds/semver v1.5.0
 	github.com/Masterminds/sprig/v3 v3.2.3
 	github.com/anchore/go-logger v0.0.0-20220728155337-03b66a5207d8
-	github.com/anchore/stereoscope v0.0.0-20230216143338-4b5ebf8c7f4b
-	github.com/docker/docker v23.0.1+incompatible
-	github.com/google/go-containerregistry v0.13.0
+	github.com/anchore/stereoscope v0.0.0-20230522170632-e14bc4437b2e
+	github.com/deitch/magic v0.0.0-20230404182410-1ff89d7342da
+	github.com/docker/docker v24.0.1+incompatible
+	github.com/github/go-spdx/v2 v2.1.2
+	github.com/go-git/go-billy/v5 v5.4.1
+	github.com/go-git/go-git/v5 v5.6.1
+	github.com/google/go-containerregistry v0.15.2
+	github.com/google/licensecheck v0.3.1
 	github.com/invopop/jsonschema v0.7.0
-	github.com/knqyf263/go-rpmdb v0.0.0-20221030135625-4082a22221ce
+	github.com/knqyf263/go-rpmdb v0.0.0-20230301153543-ba94b245509b
 	github.com/opencontainers/go-digest v1.0.0
 	github.com/sassoftware/go-rpmutils v0.2.0
-	github.com/vbatts/go-mtree v0.5.2
+	github.com/vbatts/go-mtree v0.5.3
 	golang.org/x/exp v0.0.0-20230202163644-54bba9f4231b
 	gopkg.in/yaml.v3 v3.0.1
+	modernc.org/sqlite v1.22.1
 )
 
 require (
+	github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1 // indirect
 	github.com/DataDog/zstd v1.4.5 // indirect
 	github.com/Masterminds/goutils v1.1.1 // indirect
 	github.com/Masterminds/semver/v3 v3.2.0 // indirect
-	github.com/Microsoft/go-winio v0.6.0 // indirect
+	github.com/Microsoft/go-winio v0.6.1 // indirect
+	github.com/ProtonMail/go-crypto v0.0.0-20230217124315-7d5c6f04bbb8 // indirect
+	github.com/acomagu/bufpipe v1.0.4 // indirect
 	github.com/anchore/go-struct-converter v0.0.0-20221118182256-c68fdcfa2092 // indirect
 	github.com/becheran/wildmatch-go v1.0.0 // indirect
-	github.com/containerd/containerd v1.6.18 // indirect
-	github.com/containerd/stargz-snapshotter/estargz v0.12.1 // indirect
+	github.com/cloudflare/circl v1.1.0 // indirect
+	github.com/containerd/containerd v1.7.0 // indirect
+	github.com/containerd/stargz-snapshotter/estargz v0.14.3 // indirect
 	github.com/davecgh/go-spew v1.1.1 // indirect
-	github.com/docker/cli v20.10.20+incompatible // indirect
-	github.com/docker/distribution v2.8.1+incompatible // indirect
+	github.com/docker/cli v23.0.5+incompatible // indirect
+	github.com/docker/distribution v2.8.2+incompatible // indirect
 	github.com/docker/docker-credential-helpers v0.7.0 // indirect
 	github.com/docker/go-connections v0.4.0 // indirect
 	github.com/docker/go-units v0.5.0 // indirect
 	github.com/dsnet/compress v0.0.2-0.20210315054119-f66993602bf5 // indirect
+	github.com/emirpasic/gods v1.18.1 // indirect
 	github.com/fsnotify/fsnotify v1.6.0 // indirect
 	github.com/gabriel-vasile/mimetype v1.4.0 // indirect
+	github.com/go-git/gcfg v1.5.0 // indirect
 	github.com/go-restruct/restruct v1.2.0-alpha // indirect
 	github.com/gogo/protobuf v1.3.2 // indirect
-	github.com/golang/protobuf v1.5.2 // indirect
+	github.com/golang/protobuf v1.5.3 // indirect
 	github.com/golang/snappy v0.0.4 // indirect
 	github.com/hashicorp/errwrap v1.1.0 // indirect
 	github.com/hashicorp/hcl v1.0.0 // indirect
 	github.com/huandu/xstrings v1.3.3 // indirect
 	github.com/iancoleman/orderedmap v0.0.0-20190318233801-ac98e3ecb4b0 // indirect
-	github.com/imdario/mergo v0.3.12 // indirect
-	github.com/inconshreveable/mousetrap v1.0.1 // indirect
+	github.com/imdario/mergo v0.3.13 // indirect
+	github.com/inconshreveable/mousetrap v1.1.0 // indirect
+	github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99 // indirect
 	github.com/kballard/go-shellquote v0.0.0-20180428030007-95032a82bc51 // indirect
-	github.com/klauspost/compress v1.15.11 // indirect
+	github.com/kevinburke/ssh_config v1.2.0 // indirect
+	github.com/klauspost/compress v1.16.5 // indirect
 	github.com/klauspost/pgzip v1.2.5 // indirect
 	github.com/logrusorgru/aurora v0.0.0-20200102142835-e9ef32dff381 // indirect
 	github.com/magiconair/properties v1.8.7 // indirect
 	github.com/mattn/go-colorable v0.1.13 // indirect
-	github.com/mattn/go-isatty v0.0.16 // indirect
+	github.com/mattn/go-isatty v0.0.17 // indirect
 	github.com/mattn/go-runewidth v0.0.13 // indirect
 	github.com/mitchellh/copystructure v1.2.0 // indirect
 	github.com/mitchellh/reflectwalk v1.0.2 // indirect
-	github.com/moby/term v0.0.0-20210619224110-3f7ff695adc6 // indirect
 	github.com/nwaples/rardecode v1.1.0 // indirect
-	github.com/opencontainers/image-spec v1.1.0-rc2 // indirect
+	github.com/opencontainers/image-spec v1.1.0-rc3 // indirect
 	github.com/pelletier/go-toml/v2 v2.0.6 // indirect
 	github.com/pierrec/lz4/v4 v4.1.15 // indirect
+	github.com/pjbgf/sha1cd v0.3.0 // indirect
 	github.com/pmezard/go-difflib v1.0.0 // indirect
-	github.com/remyoudompheng/bigfft v0.0.0-20200410134404-eec4a21b6bb0 // indirect
+	github.com/remyoudompheng/bigfft v0.0.0-20230129092748-24d4a6f8daec // indirect
 	github.com/rivo/uniseg v0.2.0 // indirect
 	github.com/rogpeppe/go-internal v1.8.0 // indirect
 	github.com/shopspring/decimal v1.2.0 // indirect
+	github.com/skeema/knownhosts v1.1.0 // indirect
 	github.com/spf13/cast v1.5.0 // indirect
 	github.com/spf13/jwalterweatherman v1.1.0 // indirect
 	github.com/stretchr/objx v0.5.0 // indirect
@@ -120,30 +136,31 @@ require (
 	github.com/sylabs/squashfs v0.6.1 // indirect
 	github.com/therootcompany/xz v1.0.1 // indirect
 	github.com/ulikunitz/xz v0.5.10 // indirect
-	github.com/vbatts/tar-split v0.11.2 // indirect
+	github.com/vbatts/tar-split v0.11.3 // indirect
+	github.com/xanzy/ssh-agent v0.3.3 // indirect
 	github.com/xeipuuv/gojsonpointer v0.0.0-20190905194746-02993c407bfb // indirect
 	github.com/xeipuuv/gojsonreference v0.0.0-20180127040603-bd5ef7bd5415 // indirect
 	github.com/xi2/xz v0.0.0-20171230120015-48954b6210f8 // indirect
 	github.com/xo/terminfo v0.0.0-20210125001918-ca9a967f8778 // indirect
 	golang.org/x/sync v0.1.0 // indirect
-	golang.org/x/sys v0.5.0 // indirect
-	golang.org/x/text v0.7.0 // indirect
-	golang.org/x/tools v0.2.0 // indirect
+	golang.org/x/sys v0.8.0 // indirect
+	golang.org/x/text v0.9.0 // indirect
+	golang.org/x/tools v0.8.0 // indirect
 	golang.org/x/xerrors v0.0.0-20220907171357-04be3eba64a2 // indirect
-	google.golang.org/genproto v0.0.0-20221227171554-f9683d7f8bef // indirect
-	google.golang.org/grpc v1.52.0 // indirect
-	google.golang.org/protobuf v1.28.1 // indirect
+	google.golang.org/genproto v0.0.0-20230403163135-c38d8f061ccd // indirect
+	google.golang.org/grpc v1.54.0 // indirect
+	google.golang.org/protobuf v1.30.0 // indirect
 	gopkg.in/ini.v1 v1.67.0 // indirect
-	lukechampine.com/uint128 v1.1.1 // indirect
-	modernc.org/cc/v3 v3.36.0 // indirect
-	modernc.org/ccgo/v3 v3.16.6 // indirect
-	modernc.org/libc v1.16.7 // indirect
-	modernc.org/mathutil v1.4.1 // indirect
-	modernc.org/memory v1.1.1 // indirect
-	modernc.org/opt v0.1.1 // indirect
-	modernc.org/sqlite v1.17.3 // indirect
-	modernc.org/strutil v1.1.1 // indirect
-	modernc.org/token v1.0.0 // indirect
+	gopkg.in/warnings.v0 v0.1.2 // indirect
+	lukechampine.com/uint128 v1.2.0 // indirect
+	modernc.org/cc/v3 v3.40.0 // indirect
+	modernc.org/ccgo/v3 v3.16.13 // indirect
+	modernc.org/libc v1.22.5 // indirect
+	modernc.org/mathutil v1.5.0 // indirect
+	modernc.org/memory v1.5.0 // indirect
+	modernc.org/opt v0.1.3 // indirect
+	modernc.org/strutil v1.1.3 // indirect
+	modernc.org/token v1.0.1 // indirect
 )
 
 require (
@@ -151,7 +168,7 @@ require (
 	// go: warning: github.com/andybalholm/brotli@v1.0.1: retracted by module author: occasional panics and data corruption
 	github.com/andybalholm/brotli v1.0.4 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
-	golang.org/x/crypto v0.3.0 // indirect
+	golang.org/x/crypto v0.6.0 // indirect
 )
 
 retract (

go.sum

@@ -53,25 +53,33 @@ github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1 h1:UQHMgLO+TxOEl
 github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1/go.mod h1:xomTg63KZ2rFqZQzSB4Vz2SUXa1BpHTVz9L5PTmPC4E=
 github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU=
 github.com/BurntSushi/toml v0.4.1/go.mod h1:CxXYINrC8qIiEnFrOxCa7Jy5BFHlXnUU2pbicEuybxQ=
+github.com/BurntSushi/toml v1.2.1/go.mod h1:CxXYINrC8qIiEnFrOxCa7Jy5BFHlXnUU2pbicEuybxQ=
 github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=
-github.com/CycloneDX/cyclonedx-go v0.7.1-0.20221222100750-41a1ac565cce h1:o5r3msApzvtE5LhcMkxWaKernD/PK0HpMccu7ywBj5Q=
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@@ -111,6 +123,7 @@ github.com/bgentry/speakeasy v0.1.0/go.mod h1:+zsyZBPWlz7T6j88CTgSN5bM796AkVf0kB
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@@ -122,6 +135,8 @@ github.com/chzyer/test v0.0.0-20180213035817-a1ea475d72b1/go.mod h1:Q3SI9o4m/ZMn
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@@ -132,26 +147,27 @@ github.com/cncf/xds/go v0.0.0-20210922020428-25de7278fc84/go.mod h1:eXthEFrGJvWH
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@@ -161,9 +177,10 @@ github.com/docker/go-units v0.5.0/go.mod h1:fgPhTUdO+D/Jk86RDLlptpiXQzgHJF7gydDD
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@@ -190,6 +207,20 @@ github.com/fsnotify/fsnotify v1.6.0/go.mod h1:sl3t1tCWJFWoRz9R8WJCbQihKKwmorjAbS
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@@ -237,8 +268,9 @@ github.com/golang/protobuf v1.4.2/go.mod h1:oDoupMAO8OvCJWAcko0GGGIgR6R6ocIYbsSw
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@@ -257,12 +289,13 @@ github.com/google/go-cmp v0.5.3/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/
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@@ -282,6 +315,7 @@ github.com/google/pprof v0.0.0-20210226084205-cbba55b83ad5/go.mod h1:kpwsk12EmLe
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@@ -293,8 +327,8 @@ github.com/googleapis/gax-go/v2 v2.1.0/go.mod h1:Q3nei7sK6ybPYH7twZdmQpAd1MKb7pf
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@@ -339,13 +373,16 @@ github.com/iancoleman/strcase v0.2.0/go.mod h1:iwCmte+B7n89clKwxIoIXy/HfoL7AsD47
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@@ -358,33 +395,39 @@ github.com/julienschmidt/httprouter v1.2.0/go.mod h1:SYymIcj16QtmaHHD7aYtjjsJG7V
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 github.com/xeipuuv/gojsonpointer v0.0.0-20180127040702-4e3ac2762d5f/go.mod h1:N2zxlSyiKSe5eX1tZViRH5QA0qijqEDrYZiPEAiq3wU=
 github.com/xeipuuv/gojsonpointer v0.0.0-20190905194746-02993c407bfb h1:zGWFAtiMcyryUHoUjUJX0/lt1H2+i2Ka2n+D3DImSNo=
 github.com/xeipuuv/gojsonpointer v0.0.0-20190905194746-02993c407bfb/go.mod h1:N2zxlSyiKSe5eX1tZViRH5QA0qijqEDrYZiPEAiq3wU=
@@ -612,6 +663,7 @@ go.uber.org/goleak v1.1.10 h1:z+mqJhf6ss6BSfSM671tgKyZBFPTTJM+HLxnhPC3wu0=
 go.uber.org/goleak v1.1.10/go.mod h1:8a7PlsEVH3e/a/GLqe5IIrQx6GzcnRmZEufDUTk4A7A=
 go.uber.org/multierr v1.6.0/go.mod h1:cdWPpRnG4AhwMwsgIHip0KRBQjJy5kYEpYjJxpXp9iU=
 go.uber.org/zap v1.17.0/go.mod h1:MXVU+bhUf/A7Xi2HNOnopQOrmycQ5Ih87HtOu4q5SSo=
+golang.org/x/arch v0.1.0/go.mod h1:5om86z9Hs0C8fWVUuoMHwpExlXzs5Tkyp9hOrfG7pp8=
 golang.org/x/crypto v0.0.0-20180904163835-0709b304e793/go.mod h1:6SG95UA2DQfeDnfUPMdvaQW0Q7yPrPDi9nlGo2tz2b4=
 golang.org/x/crypto v0.0.0-20181029021203-45a5f77698d3/go.mod h1:6SG95UA2DQfeDnfUPMdvaQW0Q7yPrPDi9nlGo2tz2b4=
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@@ -626,9 +678,14 @@ golang.org/x/crypto v0.0.0-20201221181555-eec23a3978ad/go.mod h1:jdWPYTVW3xRLrWP
 golang.org/x/crypto v0.0.0-20210421170649-83a5a9bb288b/go.mod h1:T9bdIzuCu7OtxOm1hfPfRQxPLYneinmdGuTeoZ9dtd4=
 golang.org/x/crypto v0.0.0-20210817164053-32db794688a5/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc=
 golang.org/x/crypto v0.0.0-20210921155107-089bfa567519/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc=
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-golang.org/x/crypto v0.3.0 h1:a06MkbcxBrEFc0w0QIZWXrH/9cCX6KJyWbBOIwAn+7A=
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 golang.org/x/exp v0.0.0-20190121172915-509febef88a4/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=
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@@ -669,8 +726,9 @@ golang.org/x/mod v0.4.1/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
 golang.org/x/mod v0.4.2/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA=
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-golang.org/x/mod v0.8.0/go.mod h1:iBbtSCu2XBx23ZKBPSOrRkjjQPZFPuis4dIYUhu/chs=
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@@ -714,10 +772,15 @@ golang.org/x/net v0.0.0-20210410081132-afb366fc7cd1/go.mod h1:9tjilg8BloeKEkVJvy
 golang.org/x/net v0.0.0-20210503060351-7fd8e65b6420/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y=
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@@ -792,6 +855,7 @@ golang.org/x/sys v0.0.0-20201119102817-f84b799fce68/go.mod h1:h1NjWce9XRLGQEsW7w
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@@ -820,18 +884,27 @@ golang.org/x/sys v0.0.0-20211205182925-97ca703d548d/go.mod h1:oPkhp1MJrh7nUepCBc
 golang.org/x/sys v0.0.0-20220520151302-bc2c85ada10a/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
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+golang.org/x/term v0.8.0 h1:n5xxQn2i3PC0yLAbjTpNT85q/Kgzcr2gIoX9OrJUols=
+golang.org/x/term v0.8.0/go.mod h1:xPskH00ivmX89bAKVGSKKtLOWNx2+17Eiy94tnKShWo=
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@@ -842,8 +915,9 @@ golang.org/x/text v0.3.5/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
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 golang.org/x/text v0.3.7/go.mod h1:u+2+/6zg+i71rQMx5EYifcz6MCKuco9NR6JIITiCfzQ=
 golang.org/x/text v0.4.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8=
-golang.org/x/text v0.7.0 h1:4BRB4x83lYWy72KwLD/qYDuTu7q9PjSagHvijDw7cLo=
 golang.org/x/text v0.7.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8=
+golang.org/x/text v0.9.0 h1:2sjJmO8cDvYveuX97RDLsxlyUxLl+GHoLxBiRdHllBE=
+golang.org/x/text v0.9.0/go.mod h1:e1OnstbJyHTd6l/uOt8jFFHp6TRDWZR/bV3emEE/zU8=
 golang.org/x/time v0.0.0-20181108054448-85acf8d2951c/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
 golang.org/x/time v0.0.0-20190308202827-9d24e82272b4/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=
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@@ -859,7 +933,6 @@ golang.org/x/tools v0.0.0-20190506145303-2d16b83fe98c/go.mod h1:RgjU9mgBXZiqYHBn
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@@ -894,7 +967,6 @@ golang.org/x/tools v0.0.0-20200804011535-6c149bb5ef0d/go.mod h1:njjCfa9FT2d7l9Bc
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@@ -1019,8 +1092,8 @@ google.golang.org/genproto v0.0.0-20211129164237-f09f9a12af12/go.mod h1:5CzLGKJ6
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@@ -1048,8 +1121,8 @@ google.golang.org/grpc v1.39.1/go.mod h1:PImNr+rS9TWYb2O4/emRugxiyHZ5JyHW5F+RPnD
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@@ -1086,9 +1163,9 @@ gopkg.in/yaml.v2 v2.4.0 h1:D8xgwECY7CYvx+Y2n4sBz93Jn9JRvxdiyyo8CTfuKaY=
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@@ -1097,42 +1174,32 @@ honnef.co/go/tools v0.0.0-20190523083050-ea95bdfd59fc/go.mod h1:rf3lG4BRIbNafJWh
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+modernc.org/mathutil v1.5.0/go.mod h1:mZW8CKdRPY1v87qxC/wUdX5O1qDzXMP5TH3wjfpga6E=
+modernc.org/memory v1.5.0 h1:N+/8c5rE6EqugZwHii4IFsaJ7MUhoWX07J5tC/iI5Ds=
+modernc.org/memory v1.5.0/go.mod h1:PkUhL0Mugw21sHPeskwZW4D6VscE/GQJOnIpCnW6pSU=
+modernc.org/opt v0.1.3 h1:3XOZf2yznlhC+ibLltsDGzABUGVx8J6pnFMS3E4dcq4=
+modernc.org/opt v0.1.3/go.mod h1:WdSiB5evDcignE70guQKxYUl14mgWtbClRi5wmkkTX0=
+modernc.org/sqlite v1.22.1 h1:P2+Dhp5FR1RlVRkQ3dDfCiv3Ok8XPxqpe70IjYVA9oE=
+modernc.org/sqlite v1.22.1/go.mod h1:OrDj17Mggn6MhE+iPbBNf7RGKODDE9NFT0f3EwDzJqk=
+modernc.org/strutil v1.1.3 h1:fNMm+oJklMGYfU9Ylcywl0CO5O6nTfaowNsh2wpPjzY=
+modernc.org/strutil v1.1.3/go.mod h1:MEHNA7PdEnEwLvspRMtWTNnp2nnyvMfkimT1NKNAGbw=
+modernc.org/tcl v1.15.2 h1:C4ybAYCGJw968e+Me18oW55kD/FexcHbqH2xak1ROSY=
+modernc.org/token v1.0.1 h1:A3qvTqOwexpfZZeyI0FeGPDlSWX5pjZu9hF4lU+EKWg=
+modernc.org/token v1.0.1/go.mod h1:UGzOrNV1mAFSEB63lOFHIpNRUVMvYTc6yu1SMY/XTDM=
+modernc.org/z v1.7.3 h1:zDJf6iHjrnB+WRD88stbXokugjyc0/pB91ri1gO6LZY=
 rsc.io/binaryregexp v0.2.0/go.mod h1:qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8=
+rsc.io/pdf v0.1.1/go.mod h1:n8OzWcQ6Sp37PL01nO98y4iUCRdTGarVfzxY20ICaU4=
 rsc.io/quote/v3 v3.1.0/go.mod h1:yEA65RcK8LyAZtP9Kv3t0HmxON59tX3rD+tICJqUlj0=
 rsc.io/sampler v1.3.0/go.mod h1:T1hPZKmBbMNahiBKFy5HrXp6adAjACjK9JXDnKaTXpA=
 sigs.k8s.io/yaml v1.3.0/go.mod h1:GeOyir5tyXNByN85N/dRIT9es5UQNerPYEKK56eTBm8=

internal/config/application.go

@@ -3,6 +3,7 @@ package config
 import (
 	"errors"
 	"fmt"
+	"os"
 	"path"
 	"reflect"
 	"sort"
@@ -17,6 +18,8 @@ import (
 	"github.com/anchore/syft/internal"
 	"github.com/anchore/syft/internal/log"
 	"github.com/anchore/syft/syft/pkg/cataloger"
+	golangCataloger "github.com/anchore/syft/syft/pkg/cataloger/golang"
+	"github.com/anchore/syft/syft/pkg/cataloger/kernel"
 )
 
 var (
@@ -38,25 +41,28 @@ type Application struct {
 	ConfigPath string `yaml:"configPath,omitempty" json:"configPath" mapstructure:"config"`
 	Verbosity  uint   `yaml:"verbosity,omitempty" json:"verbosity" mapstructure:"verbosity"`
 	// -q, indicates to not show any status output to stderr (ETUI or logging UI)
-	Quiet              bool               `yaml:"quiet" json:"quiet" mapstructure:"quiet"`
-	Outputs            []string           `yaml:"output" json:"output" mapstructure:"output"`                                           // -o, the format to use for output
-	OutputTemplatePath string             `yaml:"output-template-path" json:"output-template-path" mapstructure:"output-template-path"` // -t template file to use for output
-	File               string             `yaml:"file" json:"file" mapstructure:"file"`                                                 // --file, the file to write report output to
-	CheckForAppUpdate  bool               `yaml:"check-for-app-update" json:"check-for-app-update" mapstructure:"check-for-app-update"` // whether to check for an application update on start up or not
-	Dev                development        `yaml:"dev" json:"dev" mapstructure:"dev"`
-	Log                logging            `yaml:"log" json:"log" mapstructure:"log"` // all logging-related options
-	Catalogers         []string           `yaml:"catalogers" json:"catalogers" mapstructure:"catalogers"`
-	Package            pkg                `yaml:"package" json:"package" mapstructure:"package"`
-	Attest             attest             `yaml:"attest" json:"attest" mapstructure:"attest"`
-	FileMetadata       FileMetadata       `yaml:"file-metadata" json:"file-metadata" mapstructure:"file-metadata"`
-	FileClassification fileClassification `yaml:"file-classification" json:"file-classification" mapstructure:"file-classification"`
-	FileContents       fileContents       `yaml:"file-contents" json:"file-contents" mapstructure:"file-contents"`
-	Secrets            secrets            `yaml:"secrets" json:"secrets" mapstructure:"secrets"`
-	Registry           registry           `yaml:"registry" json:"registry" mapstructure:"registry"`
-	Exclusions         []string           `yaml:"exclude" json:"exclude" mapstructure:"exclude"`
-	Platform           string             `yaml:"platform" json:"platform" mapstructure:"platform"`
-	Name               string             `yaml:"name" json:"name" mapstructure:"name"`
-	Parallelism        int                `yaml:"parallelism" json:"parallelism" mapstructure:"parallelism"` // the number of catalog workers to run in parallel
+	Quiet                  bool               `yaml:"quiet" json:"quiet" mapstructure:"quiet"`
+	Outputs                []string           `yaml:"output" json:"output" mapstructure:"output"`                                           // -o, the format to use for output
+	OutputTemplatePath     string             `yaml:"output-template-path" json:"output-template-path" mapstructure:"output-template-path"` // -t template file to use for output
+	File                   string             `yaml:"file" json:"file" mapstructure:"file"`                                                 // --file, the file to write report output to
+	CheckForAppUpdate      bool               `yaml:"check-for-app-update" json:"check-for-app-update" mapstructure:"check-for-app-update"` // whether to check for an application update on start up or not
+	Dev                    development        `yaml:"dev" json:"dev" mapstructure:"dev"`
+	Log                    logging            `yaml:"log" json:"log" mapstructure:"log"` // all logging-related options
+	Catalogers             []string           `yaml:"catalogers" json:"catalogers" mapstructure:"catalogers"`
+	Package                pkg                `yaml:"package" json:"package" mapstructure:"package"`
+	Golang                 golang             `yaml:"golang" json:"golang" mapstructure:"golang"`
+	LinuxKernel            linuxKernel        `yaml:"linux-kernel" json:"linux-kernel" mapstructure:"linux-kernel"`
+	Attest                 attest             `yaml:"attest" json:"attest" mapstructure:"attest"`
+	FileMetadata           FileMetadata       `yaml:"file-metadata" json:"file-metadata" mapstructure:"file-metadata"`
+	FileClassification     fileClassification `yaml:"file-classification" json:"file-classification" mapstructure:"file-classification"`
+	FileContents           fileContents       `yaml:"file-contents" json:"file-contents" mapstructure:"file-contents"`
+	Secrets                secrets            `yaml:"secrets" json:"secrets" mapstructure:"secrets"`
+	Registry               registry           `yaml:"registry" json:"registry" mapstructure:"registry"`
+	Exclusions             []string           `yaml:"exclude" json:"exclude" mapstructure:"exclude"`
+	Platform               string             `yaml:"platform" json:"platform" mapstructure:"platform"`
+	Name                   string             `yaml:"name" json:"name" mapstructure:"name"`
+	Parallelism            int                `yaml:"parallelism" json:"parallelism" mapstructure:"parallelism"`                                           // the number of catalog workers to run in parallel
+	DefaultImagePullSource string             `yaml:"default-image-pull-source" json:"default-image-pull-source" mapstructure:"default-image-pull-source"` // specify default image pull source
 }
 
 func (cfg Application) ToCatalogerConfig() cataloger.Config {
@@ -68,6 +74,15 @@ func (cfg Application) ToCatalogerConfig() cataloger.Config {
 		},
 		Catalogers:  cfg.Catalogers,
 		Parallelism: cfg.Parallelism,
+		Golang: golangCataloger.NewGoCatalogerOpts().
+			WithSearchLocalModCacheLicenses(cfg.Golang.SearchLocalModCacheLicenses).
+			WithLocalModCacheDir(cfg.Golang.LocalModCacheDir).
+			WithSearchRemoteLicenses(cfg.Golang.SearchRemoteLicenses).
+			WithProxy(cfg.Golang.Proxy).
+			WithNoProxy(cfg.Golang.NoProxy),
+		LinuxKernel: kernel.LinuxCatalogerConfig{
+			CatalogModules: cfg.LinuxKernel.CatalogModules,
+		},
 	}
 }
 
@@ -123,6 +138,12 @@ func (cfg *Application) parseConfigValues() error {
 			return err
 		}
 	}
+
+	if err := checkDefaultSourceValues(cfg.DefaultImagePullSource); err != nil {
+		return err
+	}
+
+	// check for valid default source options
 	// parse nested config options
 	// for each field in the configuration struct, see if the field implements the parser interface
 	// note: the app config is a pointer, so we need to grab the elements explicitly (to traverse the address)
@@ -185,6 +206,7 @@ func loadDefaultValues(v *viper.Viper) {
 	v.SetDefault("check-for-app-update", true)
 	v.SetDefault("catalogers", nil)
 	v.SetDefault("parallelism", 1)
+	v.SetDefault("default-image-pull-source", "")
 
 	// for each field in the configuration struct, see if the field implements the defaultValueLoader interface and invoke it if it does
 	value := reflect.ValueOf(Application{})
@@ -208,6 +230,7 @@ func (cfg Application) String() string {
 	return string(appaStr)
 }
 
+// nolint:funlen
 func loadConfig(v *viper.Viper, configPath string) error {
 	var err error
 	// use explicitly the given user config
@@ -223,13 +246,26 @@ func loadConfig(v *viper.Viper, configPath string) error {
 
 	// start searching for valid configs in order...
 	// 1. look for .<appname>.yaml (in the current directory)
+	confFilePath := "." + internal.ApplicationName
+
+	// TODO: Remove this before v1.0.0
+	// See syft #1634
 	v.AddConfigPath(".")
-	v.SetConfigName("." + internal.ApplicationName)
-	if err = v.ReadInConfig(); err == nil {
-		v.Set("config", v.ConfigFileUsed())
-		return nil
-	} else if !errors.As(err, &viper.ConfigFileNotFoundError{}) {
-		return fmt.Errorf("unable to parse config=%q: %w", v.ConfigFileUsed(), err)
+	v.SetConfigName(confFilePath)
+
+	// check if config.yaml exists in the current directory
+	// DEPRECATED: this will be removed in v1.0.0
+	if _, err := os.Stat("config.yaml"); err == nil {
+		log.Warn("DEPRECATED: ./config.yaml as a configuration file is deprecated and will be removed as an option in v1.0.0, please rename to .syft.yaml")
+	}
+
+	if _, err := os.Stat(confFilePath + ".yaml"); err == nil {
+		if err = v.ReadInConfig(); err == nil {
+			v.Set("config", v.ConfigFileUsed())
+			return nil
+		} else if !errors.As(err, &viper.ConfigFileNotFoundError{}) {
+			return fmt.Errorf("unable to parse config=%q: %w", v.ConfigFileUsed(), err)
+		}
 	}
 
 	// 2. look for .<appname>/config.yaml (in the current directory)
@@ -256,11 +292,12 @@ func loadConfig(v *viper.Viper, configPath string) error {
 	}
 
 	// 4. look for <appname>/config.yaml in xdg locations (starting with xdg home config dir, then moving upwards)
-	v.AddConfigPath(path.Join(xdg.ConfigHome, internal.ApplicationName))
+	v.SetConfigName("config")
+	configPath = path.Join(xdg.ConfigHome, internal.ApplicationName)
+	v.AddConfigPath(configPath)
 	for _, dir := range xdg.ConfigDirs {
 		v.AddConfigPath(path.Join(dir, internal.ApplicationName))
 	}
-	v.SetConfigName("config")
 	if err = v.ReadInConfig(); err == nil {
 		v.Set("config", v.ConfigFileUsed())
 		return nil
@@ -269,3 +306,15 @@ func loadConfig(v *viper.Viper, configPath string) error {
 	}
 	return nil
 }
+
+var validDefaultSourceValues = []string{"registry", "docker", "podman", ""}
+
+func checkDefaultSourceValues(source string) error {
+	validValues := internal.NewStringSet(validDefaultSourceValues...)
+	if !validValues.Contains(source) {
+		validValuesString := strings.Join(validDefaultSourceValues, ", ")
+		return fmt.Errorf("%s is not a valid default source; please use one of the following: %s''", source, validValuesString)
+	}
+
+	return nil
+}

internal/config/application_test.go

@@ -0,0 +1,129 @@
+package config
+
+import (
+	"fmt"
+	"os"
+	"path"
+	"testing"
+
+	"github.com/adrg/xdg"
+	"github.com/mitchellh/go-homedir"
+	"github.com/spf13/viper"
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+)
+
+// TODO: set negative case when config.yaml is no longer a valid option
+func TestApplicationConfig(t *testing.T) {
+	// disable homedir package cache for testing
+	originalCacheOpt := homedir.DisableCache
+	homedir.DisableCache = true
+	t.Cleanup(func() {
+		homedir.DisableCache = originalCacheOpt
+	})
+
+	// ensure we have no side effects for xdg package for future tests
+	originalXDG := os.Getenv("XDG_CONFIG_HOME")
+	t.Cleanup(func() {
+		// note: we're not using t.Setenv since the effect we're trying to eliminate is within the xdg package
+		require.NoError(t, os.Setenv("XDG_CONFIG_HOME", originalXDG))
+		xdg.Reload()
+	})
+
+	// config is picked up at desired configuration paths
+	// VALID: .syft.yaml, .syft/config.yaml, ~/.syft.yaml, <XDG_CONFIG_HOME>/syft/config.yaml
+	// DEPRECATED: config.yaml is currently supported by
+	tests := []struct {
+		name       string
+		setup      func(t *testing.T) string
+		assertions func(t *testing.T, app *Application)
+		cleanup    func()
+	}{
+		{
+			name: "explicit config",
+			setup: func(t *testing.T) string {
+				return "./test-fixtures/.syft.yaml"
+			}, // no-op for explicit config
+			assertions: func(t *testing.T, app *Application) {
+				assert.Equal(t, "test-explicit-config", app.File)
+			},
+		},
+		{
+			name: "current working directory named config",
+			setup: func(t *testing.T) string {
+				err := os.Chdir("./test-fixtures/config-wd-file") // change application cwd to test-fixtures
+				require.NoError(t, err)
+				return ""
+			},
+			assertions: func(t *testing.T, app *Application) {
+				assert.Equal(t, "test-wd-named-config", app.File)
+			},
+		},
+		{
+			name: "current working directory syft dir config",
+			setup: func(t *testing.T) string {
+				err := os.Chdir("./test-fixtures/config-dir-test") // change application cwd to test-fixtures
+				require.NoError(t, err)
+				return ""
+			},
+			assertions: func(t *testing.T, app *Application) {
+				assert.Equal(t, "test-dir-config", app.File)
+			},
+		},
+		{
+			name: "home directory file config",
+			setup: func(t *testing.T) string {
+				// Because Setenv affects the whole process, it cannot be used in parallel tests or
+				// tests with parallel ancestors: see separate XDG test for consequence of this
+				t.Setenv("HOME", "./test-fixtures/config-home-test/config-file")
+				return ""
+			},
+			assertions: func(t *testing.T, app *Application) {
+				assert.Equal(t, "test-home-config", app.File)
+			},
+		},
+		{
+			name: "XDG file config",
+			setup: func(t *testing.T) string {
+				wd, err := os.Getwd()
+				require.NoError(t, err)
+				configDir := path.Join(wd, "./test-fixtures/config-home-test") // set HOME to testdata
+				// note: this explicitly has multiple XDG paths, make certain we use the first VALID one (not the first one)
+				t.Setenv("XDG_CONFIG_DIRS", fmt.Sprintf("/another/foo/bar:%s", configDir))
+				xdg.Reload()
+				return ""
+			},
+			assertions: func(t *testing.T, app *Application) {
+				assert.Equal(t, "test-home-XDG-config", app.File)
+			},
+			cleanup: func() {
+				require.NoError(t, os.Unsetenv("XDG_CONFIG_DIRS"))
+				xdg.Reload()
+			},
+		},
+	}
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			if test.cleanup != nil {
+				t.Cleanup(test.cleanup)
+			}
+			wd, err := os.Getwd()
+			require.NoError(t, err)
+
+			defer os.Chdir(wd) // reset working directory after test
+			application := &Application{}
+			viperInstance := viper.New()
+
+			// this will override home in case you are running this test locally and DO have a syft config
+			// in your home directory... now it will be ignored. Same for XDG_CONFIG_DIRS.
+			t.Setenv("HOME", "/foo/bar")
+			t.Setenv("XDG_CONFIG_DIRS", "/foo/bar")
+			xdg.Reload()
+
+			configPath := test.setup(t)
+			err = application.LoadAllValues(viperInstance, configPath)
+			require.NoError(t, err)
+			test.assertions(t, application)
+		})
+	}
+}

internal/config/golang.go

@@ -0,0 +1,19 @@
+package config
+
+import "github.com/spf13/viper"
+
+type golang struct {
+	SearchLocalModCacheLicenses bool   `json:"search-local-mod-cache-licenses" yaml:"search-local-mod-cache-licenses" mapstructure:"search-local-mod-cache-licenses"`
+	LocalModCacheDir            string `json:"local-mod-cache-dir" yaml:"local-mod-cache-dir" mapstructure:"local-mod-cache-dir"`
+	SearchRemoteLicenses        bool   `json:"search-remote-licenses" yaml:"search-remote-licenses" mapstructure:"search-remote-licenses"`
+	Proxy                       string `json:"proxy" yaml:"proxy" mapstructure:"proxy"`
+	NoProxy                     string `json:"no-proxy" yaml:"no-proxy" mapstructure:"no-proxy"`
+}
+
+func (cfg golang) loadDefaultValues(v *viper.Viper) {
+	v.SetDefault("golang.search-local-mod-cache-licenses", false)
+	v.SetDefault("golang.local-mod-cache-dir", "")
+	v.SetDefault("golang.search-remote-licenses", false)
+	v.SetDefault("golang.proxy", "")
+	v.SetDefault("golang.no-proxy", "")
+}

internal/config/linux_kernel.go

@@ -0,0 +1,11 @@
+package config
+
+import "github.com/spf13/viper"
+
+type linuxKernel struct {
+	CatalogModules bool `json:"catalog-modules" yaml:"catalog-modules" mapstructure:"catalog-modules"`
+}
+
+func (cfg linuxKernel) loadDefaultValues(v *viper.Viper) {
+	v.SetDefault("linux-kernel.catalog-modules", true)
+}

internal/config/test-fixtures/.syft.yaml

@@ -0,0 +1,7 @@
+# same as --file; write output report to a file (default is to write to stdout)
+file: "test-explicit-config"
+package:
+  cataloger:
+    scope: "squashed"
+
+    # same as --scope; limit the scope of the cataloger to only the specified types

internal/config/test-fixtures/config-dir-test/.syft/config.yaml

@@ -0,0 +1,5 @@
+# same as --file; write output report to a file (default is to write to stdout)
+file: "test-dir-config"
+package:
+  cataloger:
+    scope: "squashed"

internal/config/test-fixtures/config-home-test/config-file/.syft.yaml

@@ -0,0 +1,5 @@
+# same as --file; write output report to a file (default is to write to stdout)
+file: "test-home-config"
+package:
+  cataloger:
+    scope: "squashed"

internal/config/test-fixtures/config-home-test/syft/config.yaml

@@ -0,0 +1,5 @@
+# same as --file; write output report to a file (default is to write to stdout)
+file: "test-home-XDG-config"
+package:
+  cataloger:
+    scope: "squashed"

internal/config/test-fixtures/config-wd-file/.syft.yaml

@@ -0,0 +1,5 @@
+# same as --file; write output report to a file (default is to write to stdout)
+file: "test-wd-named-config"
+package:
+  cataloger:
+    scope: "squashed"

internal/constants.go

@@ -6,5 +6,5 @@ const (
 
 	// JSONSchemaVersion is the current schema version output by the JSON encoder
 	// This is roughly following the "SchemaVer" guidelines for versioning the JSON schema. Please see schema/json/README.md for details on how to increment.
-	JSONSchemaVersion = "6.2.0"
+	JSONSchemaVersion = "8.0.0"
 )

internal/file/zip_file_traversal.go

@@ -161,10 +161,7 @@ func UnzipToDir(archivePath, targetDir string) error {
 			return err
 		}
 
-		if err = extractSingleFile(file, joinedPath, archivePath); err != nil {
-			return err
-		}
-		return nil
+		return extractSingleFile(file, joinedPath, archivePath)
 	}
 
 	return TraverseFilesInZip(archivePath, visitor)

internal/licenses/list.go

@@ -0,0 +1,53 @@
+package licenses
+
+import "github.com/anchore/syft/internal"
+
+// all of these taken from https://github.com/golang/pkgsite/blob/8996ff632abee854aef1b764ca0501f262f8f523/internal/licenses/licenses.go#L338
+// which unfortunately is not exported. But fortunately is under BSD-style license.
+
+var (
+	FileNames = []string{
+		"COPYING",
+		"COPYING.md",
+		"COPYING.markdown",
+		"COPYING.txt",
+		"LICENCE",
+		"LICENCE.md",
+		"LICENCE.markdown",
+		"LICENCE.txt",
+		"LICENSE",
+		"LICENSE.md",
+		"LICENSE.markdown",
+		"LICENSE.txt",
+		"LICENSE-2.0.txt",
+		"LICENCE-2.0.txt",
+		"LICENSE-APACHE",
+		"LICENCE-APACHE",
+		"LICENSE-APACHE-2.0.txt",
+		"LICENCE-APACHE-2.0.txt",
+		"LICENSE-MIT",
+		"LICENCE-MIT",
+		"LICENSE.MIT",
+		"LICENCE.MIT",
+		"LICENSE.code",
+		"LICENCE.code",
+		"LICENSE.docs",
+		"LICENCE.docs",
+		"LICENSE.rst",
+		"LICENCE.rst",
+		"MIT-LICENSE",
+		"MIT-LICENCE",
+		"MIT-LICENSE.md",
+		"MIT-LICENCE.md",
+		"MIT-LICENSE.markdown",
+		"MIT-LICENCE.markdown",
+		"MIT-LICENSE.txt",
+		"MIT-LICENCE.txt",
+		"MIT_LICENSE",
+		"MIT_LICENCE",
+		"UNLICENSE",
+		"UNLICENCE",
+	}
+
+	FileNameSet = internal.NewStringSet(FileNames...)
+)

internal/licenses/parser.go

@@ -0,0 +1,39 @@
+package licenses
+
+import (
+	"io"
+
+	"github.com/google/licensecheck"
+
+	"github.com/anchore/syft/syft/license"
+	"github.com/anchore/syft/syft/pkg"
+	"github.com/anchore/syft/syft/source"
+)
+
+const (
+	coverageThreshold  = 75
+	unknownLicenseType = "UNKNOWN"
+)
+
+// Parse scans the contents of a license file to attempt to determine the type of license it is
+func Parse(reader io.Reader, l source.Location) (licenses []pkg.License, err error) {
+	licenses = make([]pkg.License, 0)
+	contents, err := io.ReadAll(reader)
+	if err != nil {
+		return nil, err
+	}
+	cov := licensecheck.Scan(contents)
+	if cov.Percent < coverageThreshold {
+		// unknown or no licenses here?
+		return licenses, nil
+	}
+
+	for _, m := range cov.Match {
+		lic := pkg.NewLicenseFromLocations(m.ID, l)
+		lic.Type = license.Concluded
+
+		licenses = append(licenses, lic)
+	}
+
+	return licenses, nil
+}

internal/spdxlicense/generate/generate_license_list.go

@@ -11,8 +11,6 @@ import (
 	"strings"
 	"text/template"
 	"time"
-
-	"github.com/scylladb/go-set/strset"
 )
 
 // This program generates license_list.go.
@@ -35,7 +33,7 @@ var licenseIDs = map[string]string{
 }
 `))
 
-var versionMatch = regexp.MustCompile(`-([0-9]+)\.?([0-9]+)?\.?([0-9]+)?\.?`)
+var versionMatch = regexp.MustCompile(`([0-9]+)\.?([0-9]+)?\.?([0-9]+)?\.?`)
 
 func main() {
 	if err := run(); err != nil {
@@ -49,7 +47,6 @@ func run() error {
 	if err != nil {
 		return fmt.Errorf("unable to get licenses list: %w", err)
 	}
-
 	var result LicenseList
 	if err = json.NewDecoder(resp.Body).Decode(&result); err != nil {
 		return fmt.Errorf("unable to decode license list: %w", err)
@@ -103,58 +100,59 @@ func run() error {
 // The third pass is for overwriting deprecated licenses with replacements, for example GPL-2.0+ is deprecated
 // and now maps to GPL-2.0-or-later.
 func processSPDXLicense(result LicenseList) map[string]string {
-	// first pass build map
-	var licenseIDs = make(map[string]string)
-	for _, l := range result.Licenses {
-		cleanID := strings.ToLower(l.ID)
-		if _, exists := licenseIDs[cleanID]; exists {
-			log.Fatalf("duplicate license ID found: %q", cleanID)
-		}
-		licenseIDs[cleanID] = l.ID
-	}
-
-	// The order of variations/permutations of a license ID matters because of we how shuffle its digits,
-	// that is because the permutation code can generate the same value for two difference licenses,
-	// for example: The licenses `ABC-1.0` and `ABC-1.1` can both map to `ABC-1`,
-	// so we need to guarantee the order they are created to avoid mapping them wrongly. So we use a sorted list.
-	// To overwrite deprecated licenses during the first pass we would later on rely on map order,
-	// [which in go is not consistent by design](https://stackoverflow.com/a/55925880).
+	// The order of variations/permutations of a license ID matter.
+	// The permutation code can generate the same value for two difference licenses,
+	// for example: The licenses `ABC-1.0` and `ABC-1.1` can both map to `ABC1`,
+	// we need to guarantee the order they are created to avoid mapping them incorrectly.
+	// To do this we use a sorted list.
 	sort.Slice(result.Licenses, func(i, j int) bool {
 		return result.Licenses[i].ID < result.Licenses[j].ID
 	})
 
-	// second pass to build exceptions and replacements
-	replaced := strset.New()
+	// keys are simplified by removing dashes and lowercasing ID
+	// this is so license declarations in the wild like: LGPL3 LGPL-3 lgpl3 and lgpl-3 can all match
+	licenseIDs := make(map[string]string)
 	for _, l := range result.Licenses {
-		var multipleID []string
-		cleanID := strings.ToLower(l.ID)
+		// licensePerms includes the cleanID in return slice
+		cleanID := cleanLicenseID(l.ID)
+		licensePerms := buildLicenseIDPermutations(cleanID)
 
-		var replacement *License
+		// if license is deprecated, find its replacement and add to licenseIDs
 		if l.Deprecated {
-			replacement = result.findReplacementLicense(l)
+			idToMap := l.ID
+			replacement := result.findReplacementLicense(l)
 			if replacement != nil {
-				licenseIDs[cleanID] = replacement.ID
+				idToMap = replacement.ID
+			}
+			// it's important to use the original licensePerms here so that the deprecated license
+			// can now point to the new correct license
+			for _, id := range licensePerms {
+				if _, exists := licenseIDs[id]; exists {
+					// can be used to debug duplicate license permutations and confirm that examples like GPL1
+					// do not point to GPL-1.1
+					// log.Println("duplicate license list permutation found when mapping deprecated license to replacement")
+					// log.Printf("already have key: %q for SPDX ID: %q; attempted to map replacement ID: %q for deprecated ID: %q\n", id, value, replacement.ID, l.ID)
+					continue
+				}
+				licenseIDs[id] = idToMap
 			}
 		}
 
-		multipleID = append(multipleID, buildLicensePermutations(cleanID)...)
-		for _, id := range multipleID {
-			// don't make replacements for IDs that have already been replaced. Since we have a sorted license list
-			// the earliest replacement is correct (any future replacements are not.
-			// e.g. replace lgpl-2 with LGPL-2.1-only is wrong, but with LGPL-2.0-only is correct)
-			if replacement == nil || replaced.Has(id) {
-				if _, exists := licenseIDs[id]; !exists {
-					licenseIDs[id] = l.ID
-				}
-			} else {
-				// a useful debugging line during builds
-				log.Printf("replacing %s with %s\n", id, replacement.ID)
-
-				licenseIDs[id] = replacement.ID
-				replaced.Add(id)
+		// if license is not deprecated, add all permutations to licenseIDs
+		for _, id := range licensePerms {
+			if _, exists := licenseIDs[id]; exists {
+				// log.Println("found duplicate license permutation key for non deprecated license")
+				// log.Printf("already have key: %q for SPDX ID: %q; tried to insert as SPDX ID:%q\n", id, value, l.ID)
+				continue
 			}
+			licenseIDs[id] = l.ID
 		}
 	}
 
 	return licenseIDs
 }
+
+func cleanLicenseID(id string) string {
+	cleanID := strings.ToLower(id)
+	return strings.ReplaceAll(cleanID, "-", "")
+}

internal/spdxlicense/generate/license.go

@@ -20,51 +20,7 @@ type License struct {
 	SeeAlso     []string `json:"seeAlso"`
 }
 
-func (l License) canReplace(other License) bool {
-	if l.Deprecated {
-		return false
-	}
-
-	// We want to replace deprecated licenses with non-deprecated counterparts
-	// For more information, see: https://github.com/spdx/license-list-XML/issues/1676
-	if other.Deprecated {
-		switch {
-		case strings.ReplaceAll(l.ID, "-only", "") == other.ID:
-			return true
-		case strings.ReplaceAll(l.ID, "-or-later", "+") == other.ID:
-			return true
-		case l.ID == "BSD-2-Clause" && other.ID == "BSD-2-Clause-NetBSD":
-			return true
-		case l.ID == "BSD-2-Clause-Views" && other.ID == "BSD-2-Clause-FreeBSD":
-			return true
-		case l.ID == "bzip2-1.0.6" && other.ID == "bzip2-1.0.5":
-			return true
-		case l.ID == "SMLNJ" && other.ID == "StandardML-NJ":
-			return true
-		}
-	}
-
-	if l.Name != other.Name {
-		return false
-	}
-
-	if l.OSIApproved != other.OSIApproved {
-		return false
-	}
-
-	if len(l.SeeAlso) != len(other.SeeAlso) {
-		return false
-	}
-
-	for i, sa := range l.SeeAlso {
-		if sa != other.SeeAlso[i] {
-			return false
-		}
-	}
-
-	return l.ID == other.ID
-}
-
+// findReplacementLicense returns a replacement license for a deprecated license
 func (ll LicenseList) findReplacementLicense(deprecated License) *License {
 	for _, l := range ll.Licenses {
 		if l.canReplace(deprecated) {
@@ -75,16 +31,62 @@ func (ll LicenseList) findReplacementLicense(deprecated License) *License {
 	return nil
 }
 
-func buildLicensePermutations(license string) (perms []string) {
-	lv := findLicenseVersion(license)
-	vp := versionPermutations(lv)
-
-	version := strings.Join(lv, ".")
-	for _, p := range vp {
-		perms = append(perms, strings.Replace(license, version, p, 1))
+func (l License) canReplace(deprecated License) bool {
+	// don't replace a license with a deprecated license
+	if l.Deprecated {
+		return false
 	}
 
-	return perms
+	// We want to replace deprecated licenses with non-deprecated counterparts
+	// For more information, see: https://github.com/spdx/license-list-XML/issues/1676
+	switch {
+	case strings.ReplaceAll(l.ID, "-only", "") == deprecated.ID:
+		return true
+	case strings.ReplaceAll(l.ID, "-or-later", "+") == deprecated.ID:
+		return true
+	case l.ID == "BSD-2-Clause" && deprecated.ID == "BSD-2-Clause-NetBSD":
+		return true
+	case l.ID == "BSD-2-Clause-Views" && deprecated.ID == "BSD-2-Clause-FreeBSD":
+		return true
+	case l.ID == "bzip2-1.0.6" && deprecated.ID == "bzip2-1.0.5":
+		return true
+	case l.ID == "SMLNJ" && deprecated.ID == "StandardML-NJ":
+		return true
+	}
+
+	if l.Name != deprecated.Name {
+		return false
+	}
+
+	if l.OSIApproved != deprecated.OSIApproved {
+		return false
+	}
+
+	if len(l.SeeAlso) != len(deprecated.SeeAlso) {
+		return false
+	}
+
+	for i, sa := range l.SeeAlso {
+		if sa != deprecated.SeeAlso[i] {
+			return false
+		}
+	}
+
+	return l.ID == deprecated.ID
+}
+
+func buildLicenseIDPermutations(cleanID string) (perms []string) {
+	lv := findLicenseVersion(cleanID)
+	vp := versionPermutations(lv)
+
+	permSet := strset.New()
+	version := strings.Join(lv, ".")
+	for _, p := range vp {
+		permSet.Add(strings.Replace(cleanID, version, p, 1))
+	}
+
+	permSet.Add(cleanID)
+	return permSet.List()
 }
 
 func findLicenseVersion(license string) (version []string) {

internal/spdxlicense/generate/license_test.go

@@ -67,56 +67,57 @@ func TestLicensePermutations(t *testing.T) {
 		{
 			"GPL-1-only",
 			[]string{
-				"GPL-1-only",
-				"GPL-1.0-only",
-				"GPL-1.0.0-only",
+				"gpl1only",
+				"gpl1.0only",
+				"gpl1.0.0only",
 			},
 		},
 		{
 			"GPL-2",
 			[]string{
-				"GPL-2",
-				"GPL-2.0",
-				"GPL-2.0.0",
+				"gpl2",
+				"gpl2.0",
+				"gpl2.0.0",
 			},
 		},
 		{
 			"GPL-2.0+",
 			[]string{
-				"GPL-2+",
-				"GPL-2.0+",
-				"GPL-2.0.0+",
+				"gpl2+",
+				"gpl2.0+",
+				"gpl2.0.0+",
 			},
 		},
 		{
 			"GPL-3.0.0-or-later",
 			[]string{
-				"GPL-3-or-later",
-				"GPL-3.0-or-later",
-				"GPL-3.0.0-or-later",
+				"gpl3orlater",
+				"gpl3.0orlater",
+				"gpl3.0.0orlater",
 			},
 		},
 		{
 			"abc-1.1",
 			[]string{
-				"abc-1",
-				"abc-1.1",
-				"abc-1.1.0",
+				"abc1",
+				"abc1.1",
+				"abc1.1.0",
 			},
 		},
 		{
 			"oldap-2.0",
 			[]string{
-				"oldap-2",
-				"oldap-2.0",
-				"oldap-2.0.0",
+				"oldap2",
+				"oldap2.0",
+				"oldap2.0.0",
 			},
 		},
 	}
 
 	for _, test := range tests {
 		t.Run(test.shortName, func(t *testing.T) {
-			perms := buildLicensePermutations(test.shortName)
+			cleanID := cleanLicenseID(test.shortName)
+			perms := buildLicenseIDPermutations(cleanID)
 			assert.ElementsMatch(t, test.permutations, perms)
 		})
 	}
@@ -183,10 +184,6 @@ func TestFindLicenseVersion(t *testing.T) {
 			"GPL-2",
 			[]string{"2"},
 		},
-		{
-			"bzip2-1",
-			[]string{"1"},
-		},
 		{
 			"php-3.01",
 			[]string{"3", "01"},

internal/spdxlicense/license.go

@@ -18,16 +18,20 @@ const (
 
 //go:generate go run ./generate
 
-func ID(id string) (value, other string, exists bool) {
-	id = strings.TrimSpace(id)
-	// ignore blank strings or the joiner
-	if id == "" || id == "AND" {
-		return "", "", false
-	}
+// ID returns the canonical license ID for the given license ID
+// Note: this function is only concerned with returning a best match of an SPDX license ID
+// SPDX Expressions will be handled by a parent package which will call this function
+func ID(id string) (value string, exists bool) {
 	// first look for a canonical license
-	if value, exists := licenseIDs[strings.ToLower(id)]; exists {
-		return value, "", exists
+	if value, exists := licenseIDs[cleanLicenseID(id)]; exists {
+		return value, exists
 	}
 	// we did not find, so treat it as a separate license
-	return "", id, true
+	return "", false
+}
+
+func cleanLicenseID(id string) string {
+	id = strings.TrimSpace(id)
+	id = strings.ToLower(id)
+	return strings.ReplaceAll(id, "-", "")
 }

internal/spdxlicense/license_list_test.go

@@ -9,8 +9,8 @@ import (
 func TestLicenceListIDs(t *testing.T) {
 	// do a sanity check on the generated data
 	assert.Equal(t, "0BSD", licenseIDs["0bsd"])
-	assert.Equal(t, "ZPL-2.1", licenseIDs["zpl-2.1"])
-	assert.Equal(t, "GPL-2.0-only", licenseIDs["gpl-2"])
-	assert.Equal(t, "GPL-2.0-or-later", licenseIDs["gpl-2+"])
+	assert.Equal(t, "ZPL-2.1", licenseIDs["zpl2.1"])
+	assert.Equal(t, "GPL-2.0-only", licenseIDs["gpl2"])
+	assert.Equal(t, "GPL-2.0-or-later", licenseIDs["gpl2+"])
 	assert.NotEmpty(t, Version)
 }

internal/spdxlicense/license_test.go

@@ -6,83 +6,70 @@ import (
 	"github.com/stretchr/testify/assert"
 )
 
-func TestIDParse(t *testing.T) {
+func TestSPDXIDRecognition(t *testing.T) {
 	var tests = []struct {
 		shortName string
 		id        string
-		other     string
 		found     bool
 	}{
 		{
 			"GPL-1-only",
 			"GPL-1.0-only",
-			"",
+			true,
+		},
+		{
+			"gpl1",
+			"GPL-1.0-only",
+			true,
+		},
+		{
+			"gpl-1",
+			"GPL-1.0-only",
 			true,
 		},
 		{
 			"GPL-2",
 			"GPL-2.0-only",
-			"",
 			true,
 		},
 		{
 			"GPL-2+",
 			"GPL-2.0-or-later",
-			"",
 			true,
 		},
 		{
 			"GPL-3.0.0-or-later",
 			"GPL-3.0-or-later",
-			"",
 			true,
 		},
 		{
 			"GPL-3-with-autoconf-exception",
 			"GPL-3.0-with-autoconf-exception",
-			"",
 			true,
 		},
 		{
 			"CC-by-nc-3-de",
 			"CC-BY-NC-3.0-DE",
-			"",
 			true,
 		},
 		// the below few cases are NOT expected, however, seem unavoidable given the current approach
-		{
-			"w3c-20150513.0.0",
-			"W3C-20150513",
-			"",
-			true,
-		},
 		{
 			"spencer-86.0.0",
 			"Spencer-86",
-			"",
 			true,
 		},
 		{
 			"unicode-dfs-2015.0.0",
 			"Unicode-DFS-2015",
-			"",
 			true,
 		},
 		{
 			"Unknown",
 			"",
-			"Unknown",
-			true,
-		},
-		{
-			"   ",
-			"",
-			"",
 			false,
 		},
 		{
-			"AND",
-			"",
+			"   ",
 			"",
 			false,
 		},
@@ -90,10 +77,9 @@ func TestIDParse(t *testing.T) {
 
 	for _, test := range tests {
 		t.Run(test.shortName, func(t *testing.T) {
-			value, other, exists := ID(test.shortName)
+			value, exists := ID(test.shortName)
 			assert.Equal(t, test.found, exists)
 			assert.Equal(t, test.id, value)
-			assert.Equal(t, test.other, other)
 		})
 	}
 }

internal/stringset.go

@@ -15,8 +15,10 @@ func NewStringSet(start ...string) StringSet {
 }
 
 // Add a string to the set.
-func (s StringSet) Add(i string) {
-	s[i] = struct{}{}
+func (s StringSet) Add(i ...string) {
+	for _, str := range i {
+		s[str] = struct{}{}
+	}
 }
 
 // Remove a string from the set.
@@ -41,3 +43,19 @@ func (s StringSet) ToSlice() []string {
 	sort.Strings(ret)
 	return ret
 }
+
+func (s StringSet) Equals(o StringSet) bool {
+	if len(s) != len(o) {
+		return false
+	}
+	for k := range s {
+		if !o.Contains(k) {
+			return false
+		}
+	}
+	return true
+}
+
+func (s StringSet) Empty() bool {
+	return len(s) < 1
+}

schema/json/generate.go

@@ -29,32 +29,40 @@ can be extended to include specific package metadata struct shapes in the future
 // not matter as long as it is exported.
 
 // TODO: this should be generated from reflection of whats in the pkg package
+// Should be created during generation below; use reflection's ability to
+// create types at runtime.
+// should be same name as struct minus metadata
 type artifactMetadataContainer struct {
-	Alpm              pkg.AlpmMetadata
-	Apk               pkg.ApkMetadata
-	Binary            pkg.BinaryMetadata
-	Cocopods          pkg.CocoapodsMetadata
-	Conan             pkg.ConanMetadata
-	ConanLock         pkg.ConanLockMetadata
-	Dart              pkg.DartPubMetadata
-	Dotnet            pkg.DotnetDepsMetadata
-	Dpkg              pkg.DpkgMetadata
-	Gem               pkg.GemMetadata
-	GoBin             pkg.GolangBinMetadata
-	GoMod             pkg.GolangModMetadata
-	Hackage           pkg.HackageMetadata
-	Java              pkg.JavaMetadata
-	KbPackage         pkg.KbPackageMetadata
-	NpmPackage        pkg.NpmPackageJSONMetadata
-	NpmPackageLock    pkg.NpmPackageLockJSONMetadata
-	MixLock           pkg.MixLockMetadata
-	Php               pkg.PhpComposerJSONMetadata
-	Portage           pkg.PortageMetadata
-	PythonPackage     pkg.PythonPackageMetadata
-	PythonPipfilelock pkg.PythonPipfileLockMetadata
-	Rebar             pkg.RebarLockMetadata
-	Rpm               pkg.RpmMetadata
-	RustCargo         pkg.CargoPackageMetadata
+	Alpm               pkg.AlpmMetadata
+	Apk                pkg.ApkMetadata
+	Binary             pkg.BinaryMetadata
+	Cocopods           pkg.CocoapodsMetadata
+	Conan              pkg.ConanMetadata
+	ConanLock          pkg.ConanLockMetadata
+	Dart               pkg.DartPubMetadata
+	Dotnet             pkg.DotnetDepsMetadata
+	Dpkg               pkg.DpkgMetadata
+	Gem                pkg.GemMetadata
+	GoBin              pkg.GolangBinMetadata
+	GoMod              pkg.GolangModMetadata
+	Hackage            pkg.HackageMetadata
+	Java               pkg.JavaMetadata
+	KbPackage          pkg.KbPackageMetadata
+	LinuxKernel        pkg.LinuxKernelMetadata
+	LinuxKernelModule  pkg.LinuxKernelModuleMetadata
+	Nix                pkg.NixStoreMetadata
+	NpmPackage         pkg.NpmPackageJSONMetadata
+	NpmPackageLock     pkg.NpmPackageLockJSONMetadata
+	MixLock            pkg.MixLockMetadata
+	Php                pkg.PhpComposerJSONMetadata
+	Portage            pkg.PortageMetadata
+	PythonPackage      pkg.PythonPackageMetadata
+	PythonPipfilelock  pkg.PythonPipfileLockMetadata
+	PythonRequirements pkg.PythonRequirementsMetadata
+	RDescriptionFile   pkg.RDescriptionFileMetadata
+	Rebar              pkg.RebarLockMetadata
+	Rpm                pkg.RpmMetadata
+	RustCargo          pkg.CargoPackageMetadata
 }
 
 func main() {
@@ -70,7 +78,6 @@ func build() *jsonschema.Schema {
 	}
 	documentSchema := reflector.ReflectFromType(reflect.TypeOf(&syftjsonModel.Document{}))
 	metadataSchema := reflector.ReflectFromType(reflect.TypeOf(&artifactMetadataContainer{}))
-
 	// TODO: inject source definitions
 
 	// inject the definitions of all metadatas into the schema definitions

syft/artifact/relationship.go

@@ -7,6 +7,12 @@ const (
 	// has been completed.
 	OwnershipByFileOverlapRelationship RelationshipType = "ownership-by-file-overlap"
 
+	// EvidentByRelationship is a package-to-file relationship indicating the that existence of this package is evident
+	// by the contents of a file. This does not necessarily mean that the package is contained within that file
+	// or that it is described by it (either or both may be true). This does NOT map to an existing specific SPDX
+	// relationship. Instead, this should be mapped to OTHER and the comment field be updated to show EVIDENT_BY.
+	EvidentByRelationship RelationshipType = "evident-by"
+
 	// ContainsRelationship (supports any-to-any linkages) is a proxy for the SPDX 2.2 CONTAINS relationship.
 	ContainsRelationship RelationshipType = "contains"
 

syft/cpe/cpe.go

@@ -106,9 +106,8 @@ func stripSlashes(s string) string {
 	for i, c := range s {
 		if c == '\\' && i+1 < len(s) && strings.ContainsRune(allowedCPEPunctuation, rune(s[i+1])) {
 			continue
-		} else {
-			sb.WriteRune(c)
 		}
+		sb.WriteRune(c)
 	}
 	return sb.String()
 }

syft/event/cataloger_task.go

@@ -0,0 +1,52 @@
+package event
+
+import (
+	"github.com/wagoodman/go-partybus"
+	"github.com/wagoodman/go-progress"
+
+	"github.com/anchore/syft/internal/bus"
+)
+
+type CatalogerTask struct {
+	prog *progress.Manual
+	// Title
+	Title string
+	// TitleOnCompletion a string to use as title when completed
+	TitleOnCompletion string
+	// SubStatus indicates this progress should be rendered as a sub-item
+	SubStatus bool
+	// RemoveOnCompletion indicates this progress line will be removed when completed
+	RemoveOnCompletion bool
+	// value is the value to display -- not public as SetValue needs to be called to initialize this progress
+	value string
+}
+
+func (e *CatalogerTask) init() {
+	e.prog = progress.NewManual(-1)
+
+	bus.Publish(partybus.Event{
+		Type:   CatalogerTaskStarted,
+		Source: e,
+	})
+}
+
+func (e *CatalogerTask) SetCompleted() {
+	if e.prog != nil {
+		e.prog.SetCompleted()
+	}
+}
+
+func (e *CatalogerTask) SetValue(value string) {
+	if e.prog == nil {
+		e.init()
+	}
+	e.value = value
+}
+
+func (e *CatalogerTask) GetValue() string {
+	return e.value
+}
+
+func (e *CatalogerTask) GetMonitor() *progress.Manual {
+	return e.prog
+}

syft/event/event.go

@@ -34,4 +34,7 @@ const (
 
 	// AttestationStarted is a partybus event that occurs when starting an SBOM attestation process
 	AttestationStarted partybus.EventType = "syft-attestation-started-event"
+
+	// CatalogerTaskStarted is a partybus event that occurs when starting a task within a cataloger
+	CatalogerTaskStarted partybus.EventType = "syft-cataloger-task-started"
 )

syft/event/parsers/parsers.go

@@ -111,6 +111,19 @@ func ParseFileIndexingStarted(e partybus.Event) (string, progress.StagedProgress
 	return path, prog, nil
 }
 
+func ParseCatalogerTaskStarted(e partybus.Event) (*event.CatalogerTask, error) {
+	if err := checkEventType(e.Type, event.CatalogerTaskStarted); err != nil {
+		return nil, err
+	}
+
+	source, ok := e.Source.(*event.CatalogerTask)
+	if !ok {
+		return nil, newPayloadErr(e.Type, "Source", e.Source)
+	}
+
+	return source, nil
+}
+
 func ParseExit(e partybus.Event) (func() error, error) {
 	if err := checkEventType(e.Type, event.Exit); err != nil {
 		return nil, err

syft/file/contents_cataloger.go

@@ -37,7 +37,7 @@ func (i *ContentsCataloger) Catalog(resolver source.FileResolver) (map[source.Co
 			return nil, err
 		}
 
-		if i.skipFilesAboveSizeInBytes > 0 && metadata.Size > i.skipFilesAboveSizeInBytes {
+		if i.skipFilesAboveSizeInBytes > 0 && metadata.Size() > i.skipFilesAboveSizeInBytes {
 			continue
 		}
 

syft/file/digest_cataloger.go

@@ -51,10 +51,10 @@ func (i *DigestsCataloger) Catalog(resolver source.FileResolver) (map[source.Coo
 		if err != nil {
 			return nil, err
 		}
-		prog.N++
+		prog.Increment()
 		results[location.Coordinates] = result
 	}
-	log.Debugf("file digests cataloger processed %d files", prog.N)
+	log.Debugf("file digests cataloger processed %d files", prog.Current())
 	prog.SetCompleted()
 	return results, nil
 }
@@ -123,9 +123,7 @@ func CleanDigestAlgorithmName(name string) string {
 
 func digestsCatalogingProgress(locations int64) (*progress.Stage, *progress.Manual) {
 	stage := &progress.Stage{}
-	prog := &progress.Manual{
-		Total: locations,
-	}
+	prog := progress.NewManual(locations)
 
 	bus.Publish(partybus.Event{
 		Type: event.FileDigestsCatalogerStarted,

syft/file/license.go

@@ -0,0 +1,32 @@
+package file
+
+import (
+	"github.com/anchore/syft/internal/log"
+	"github.com/anchore/syft/syft/license"
+)
+
+type License struct {
+	Value           string
+	SPDXExpression  string
+	Type            license.Type
+	LicenseEvidence *LicenseEvidence // evidence from license classifier
+}
+
+type LicenseEvidence struct {
+	Confidence int
+	Offset     int
+	Extent     int
+}
+
+func NewLicense(value string) License {
+	spdxExpression, err := license.ParseExpression(value)
+	if err != nil {
+		log.Trace("unable to parse license expression: %s, %w", value, err)
+	}
+
+	return License{
+		Value:          value,
+		SPDXExpression: spdxExpression,
+		Type:           license.Concluded,
+	}
+}

syft/file/metadata_cataloger.go

@@ -32,18 +32,16 @@ func (i *MetadataCataloger) Catalog(resolver source.FileResolver) (map[source.Co
 		}
 
 		results[location.Coordinates] = metadata
-		prog.N++
+		prog.Increment()
 	}
-	log.Debugf("file metadata cataloger processed %d files", prog.N)
+	log.Debugf("file metadata cataloger processed %d files", prog.Current())
 	prog.SetCompleted()
 	return results, nil
 }
 
 func metadataCatalogingProgress(locations int64) (*progress.Stage, *progress.Manual) {
 	stage := &progress.Stage{}
-	prog := &progress.Manual{
-		Total: locations,
-	}
+	prog := progress.NewManual(locations)
 
 	bus.Publish(partybus.Event{
 		Type: event.FileMetadataCatalogerStarted,

syft/file/metadata_cataloger_test.go

@@ -51,12 +51,15 @@ func TestFileMetadataCataloger(t *testing.T) {
 			path:   "/file-1.txt",
 			exists: true,
 			expected: source.FileMetadata{
+				FileInfo: file.ManualInfo{
+					NameValue: "file-1.txt",
+					ModeValue: 0644,
+					SizeValue: 7,
+				},
 				Path:     "/file-1.txt",
-				Mode:     0644,
 				Type:     file.TypeRegular,
 				UserID:   1,
 				GroupID:  2,
-				Size:     7,
 				MIMEType: "text/plain",
 			},
 		},
@@ -64,8 +67,11 @@ func TestFileMetadataCataloger(t *testing.T) {
 			path:   "/hardlink-1",
 			exists: true,
 			expected: source.FileMetadata{
+				FileInfo: file.ManualInfo{
+					NameValue: "hardlink-1",
+					ModeValue: 0644,
+				},
 				Path:            "/hardlink-1",
-				Mode:            0644,
 				Type:            file.TypeHardLink,
 				LinkDestination: "file-1.txt",
 				UserID:          1,
@@ -77,8 +83,11 @@ func TestFileMetadataCataloger(t *testing.T) {
 			path:   "/symlink-1",
 			exists: true,
 			expected: source.FileMetadata{
-				Path:            "/symlink-1",
-				Mode:            0777 | os.ModeSymlink,
+				Path: "/symlink-1",
+				FileInfo: file.ManualInfo{
+					NameValue: "symlink-1",
+					ModeValue: 0777 | os.ModeSymlink,
+				},
 				Type:            file.TypeSymLink,
 				LinkDestination: "file-1.txt",
 				UserID:          0,
@@ -90,8 +99,11 @@ func TestFileMetadataCataloger(t *testing.T) {
 			path:   "/char-device-1",
 			exists: true,
 			expected: source.FileMetadata{
-				Path:     "/char-device-1",
-				Mode:     0644 | os.ModeDevice | os.ModeCharDevice,
+				Path: "/char-device-1",
+				FileInfo: file.ManualInfo{
+					NameValue: "char-device-1",
+					ModeValue: 0644 | os.ModeDevice | os.ModeCharDevice,
+				},
 				Type:     file.TypeCharacterDevice,
 				UserID:   0,
 				GroupID:  0,
@@ -102,8 +114,11 @@ func TestFileMetadataCataloger(t *testing.T) {
 			path:   "/block-device-1",
 			exists: true,
 			expected: source.FileMetadata{
-				Path:     "/block-device-1",
-				Mode:     0644 | os.ModeDevice,
+				Path: "/block-device-1",
+				FileInfo: file.ManualInfo{
+					NameValue: "block-device-1",
+					ModeValue: 0644 | os.ModeDevice,
+				},
 				Type:     file.TypeBlockDevice,
 				UserID:   0,
 				GroupID:  0,
@@ -114,8 +129,11 @@ func TestFileMetadataCataloger(t *testing.T) {
 			path:   "/fifo-1",
 			exists: true,
 			expected: source.FileMetadata{
-				Path:     "/fifo-1",
-				Mode:     0644 | os.ModeNamedPipe,
+				Path: "/fifo-1",
+				FileInfo: file.ManualInfo{
+					NameValue: "fifo-1",
+					ModeValue: 0644 | os.ModeNamedPipe,
+				},
 				Type:     file.TypeFIFO,
 				UserID:   0,
 				GroupID:  0,
@@ -126,13 +144,15 @@ func TestFileMetadataCataloger(t *testing.T) {
 			path:   "/bin",
 			exists: true,
 			expected: source.FileMetadata{
-				Path:     "/bin",
-				Mode:     0755 | os.ModeDir,
+				Path: "/bin",
+				FileInfo: file.ManualInfo{
+					NameValue: "bin",
+					ModeValue: 0755 | os.ModeDir,
+				},
 				Type:     file.TypeDirectory,
 				UserID:   0,
 				GroupID:  0,
 				MIMEType: "",
-				IsDir:    true,
 			},
 		},
 	}
@@ -144,8 +164,15 @@ func TestFileMetadataCataloger(t *testing.T) {
 
 			l := source.NewLocationFromImage(test.path, *ref.Reference, img)
 
-			assert.Equal(t, test.expected, actual[l.Coordinates], "mismatched metadata")
+			if _, ok := actual[l.Coordinates]; ok {
+				// we're not interested in keeping the test fixtures up to date with the latest file modification times
+				// thus ModTime is not under test
+				fi := test.expected.FileInfo.(file.ManualInfo)
+				fi.ModTimeValue = actual[l.Coordinates].ModTime()
+				test.expected.FileInfo = fi
+			}
 
+			assert.True(t, test.expected.Equal(actual[l.Coordinates]))
 		})
 	}
 

syft/file/secrets_cataloger.go

@@ -55,12 +55,12 @@ func (i *SecretsCataloger) Catalog(resolver source.FileResolver) (map[source.Coo
 			return nil, err
 		}
 		if len(result) > 0 {
-			secretsDiscovered.N += int64(len(result))
+			secretsDiscovered.Add(int64(len(result)))
 			results[location.Coordinates] = result
 		}
-		prog.N++
+		prog.Increment()
 	}
-	log.Debugf("secrets cataloger discovered %d secrets", secretsDiscovered.N)
+	log.Debugf("secrets cataloger discovered %d secrets", secretsDiscovered.Current())
 	prog.SetCompleted()
 	return results, nil
 }
@@ -71,11 +71,11 @@ func (i *SecretsCataloger) catalogLocation(resolver source.FileResolver, locatio
 		return nil, err
 	}
 
-	if metadata.Size == 0 {
+	if metadata.Size() == 0 {
 		return nil, nil
 	}
 
-	if i.skipFilesAboveSize > 0 && metadata.Size > i.skipFilesAboveSize {
+	if i.skipFilesAboveSize > 0 && metadata.Size() > i.skipFilesAboveSize {
 		return nil, nil
 	}
 
@@ -139,9 +139,7 @@ type SecretsMonitor struct {
 func secretsCatalogingProgress(locations int64) (*progress.Stage, *progress.Manual, *progress.Manual) {
 	stage := &progress.Stage{}
 	secretsDiscovered := &progress.Manual{}
-	prog := &progress.Manual{
-		Total: locations,
-	}
+	prog := progress.NewManual(locations)
 
 	bus.Publish(partybus.Event{
 		Type:   event.SecretsCatalogerStarted,

syft/formats/common/cyclonedxhelpers/component.go

@@ -78,7 +78,7 @@ func decodeComponent(c *cyclonedx.Component) *pkg.Package {
 		Name:      c.Name,
 		Version:   c.Version,
 		Locations: decodeLocations(values),
-		Licenses:  decodeLicenses(c),
+		Licenses:  pkg.NewLicenseSet(decodeLicenses(c)...),
 		CPEs:      decodeCPEs(c),
 		PURL:      c.PackageURL,
 	}

syft/formats/common/cyclonedxhelpers/component_test.go

@@ -29,14 +29,13 @@ func Test_encodeComponentProperties(t *testing.T) {
 			input: pkg.Package{
 				FoundBy: "cataloger",
 				Locations: source.NewLocationSet(
-					source.Location{Coordinates: source.Coordinates{RealPath: "test"}},
+					source.NewLocationFromCoordinates(source.Coordinates{RealPath: "test"}),
 				),
 				Metadata: pkg.ApkMetadata{
 					Package:       "libc-utils",
 					OriginPackage: "libc-dev",
 					Maintainer:    "Natanael Copa <ncopa@alpinelinux.org>",
 					Version:       "0.7.2-r0",
-					License:       "BSD",
 					Architecture:  "x86_64",
 					URL:           "http://alpinelinux.org",
 					Description:   "Meta package to pull in correct libc",
@@ -140,7 +139,6 @@ func Test_encodeComponentProperties(t *testing.T) {
 					Version:   "0.9.2",
 					SourceRpm: "dive-0.9.2-1.src.rpm",
 					Size:      12406784,
-					License:   "MIT",
 					Vendor:    "",
 					Files:     []pkg.RpmdbFileRecord{},
 				},

syft/formats/common/cyclonedxhelpers/decoder.go

@@ -54,7 +54,7 @@ func ToSyftModel(bom *cyclonedx.BOM) (*sbom.SBOM, error) {
 
 	s := &sbom.SBOM{
 		Artifacts: sbom.Artifacts{
-			PackageCatalog:    pkg.NewCatalog(),
+			Packages:          pkg.NewCollection(),
 			LinuxDistribution: linuxReleaseFromComponents(*bom.Components),
 		},
 		Source:     extractComponents(bom.Metadata),
@@ -95,7 +95,7 @@ func collectPackages(component *cyclonedx.Component, s *sbom.SBOM, idMap map[str
 		}
 		// TODO there must be a better way than needing to call this manually:
 		p.SetID()
-		s.Artifacts.PackageCatalog.Add(*p)
+		s.Artifacts.Packages.Add(*p)
 	}
 
 	if component.Components != nil {
@@ -206,7 +206,7 @@ func collectRelationships(bom *cyclonedx.BOM, s *sbom.SBOM, idMap map[string]int
 		return
 	}
 	for _, d := range *bom.Dependencies {
-		from, fromExists := idMap[d.Ref].(artifact.Identifiable)
+		to, fromExists := idMap[d.Ref].(artifact.Identifiable)
 		if !fromExists {
 			continue
 		}
@@ -216,7 +216,7 @@ func collectRelationships(bom *cyclonedx.BOM, s *sbom.SBOM, idMap map[string]int
 		}
 
 		for _, t := range *d.Dependencies {
-			to, toExists := idMap[t].(artifact.Identifiable)
+			from, toExists := idMap[t].(artifact.Identifiable)
 			if !toExists {
 				continue
 			}

syft/formats/common/cyclonedxhelpers/decoder_test.go

@@ -8,6 +8,9 @@ import (
 
 	"github.com/CycloneDX/cyclonedx-go"
 	"github.com/stretchr/testify/assert"
+
+	"github.com/anchore/syft/syft/artifact"
+	"github.com/anchore/syft/syft/sbom"
 )
 
 func Test_decode(t *testing.T) {
@@ -184,16 +187,16 @@ func Test_decode(t *testing.T) {
 					ver: "1.2.3",
 				},
 				{
-					pkg:      "package-1",
-					ver:      "1.0.1",
-					cpe:      "cpe:2.3:*:some:package:1:*:*:*:*:*:*:*",
-					purl:     "pkg:some/package-1@1.0.1?arch=arm64&upstream=upstream1&distro=alpine-1",
-					relation: "package-2",
+					pkg:  "package-1",
+					ver:  "1.0.1",
+					cpe:  "cpe:2.3:*:some:package:1:*:*:*:*:*:*:*",
+					purl: "pkg:some/package-1@1.0.1?arch=arm64&upstream=upstream1&distro=alpine-1",
 				},
 				{
-					pkg:  "package-2",
-					ver:  "2.0.2",
-					purl: "pkg:apk/alpine/alpine-baselayout@3.2.0-r16?arch=x86_64&upstream=alpine-baselayout&distro=alpine-3.14.2",
+					pkg:      "package-2",
+					ver:      "2.0.2",
+					purl:     "pkg:apk/alpine/alpine-baselayout@3.2.0-r16?arch=x86_64&upstream=alpine-baselayout&distro=alpine-3.14.2",
+					relation: "package-1",
 				},
 			},
 		},
@@ -210,7 +213,7 @@ func Test_decode(t *testing.T) {
 					assert.Equal(t, e.ver, sbom.Artifacts.LinuxDistribution.VersionID)
 				}
 				if e.pkg != "" {
-					for p := range sbom.Artifacts.PackageCatalog.Enumerate() {
+					for p := range sbom.Artifacts.Packages.Enumerate() {
 						if e.pkg != p.Name {
 							continue
 						}
@@ -238,7 +241,7 @@ func Test_decode(t *testing.T) {
 						if e.relation != "" {
 							foundRelation := false
 							for _, r := range sbom.Relationships {
-								p := sbom.Artifacts.PackageCatalog.Package(r.To.ID())
+								p := sbom.Artifacts.Packages.Package(r.To.ID())
 								if e.relation == p.Name {
 									foundRelation = true
 									break
@@ -257,6 +260,46 @@ func Test_decode(t *testing.T) {
 	}
 }
 
+func Test_relationshipDirection(t *testing.T) {
+	cyclonedx_bom := cyclonedx.BOM{Metadata: nil,
+		Components: &[]cyclonedx.Component{
+			{
+				BOMRef:     "p1",
+				Type:       cyclonedx.ComponentTypeLibrary,
+				Name:       "package-1",
+				Version:    "1.0.1",
+				PackageURL: "pkg:some/package-1@1.0.1?arch=arm64&upstream=upstream1&distro=alpine-1",
+			},
+			{
+				BOMRef:     "p2",
+				Type:       cyclonedx.ComponentTypeLibrary,
+				Name:       "package-2",
+				Version:    "2.0.2",
+				PackageURL: "pkg:some/package-2@2.0.2?arch=arm64&upstream=upstream1&distro=alpine-1",
+			},
+		},
+		Dependencies: &[]cyclonedx.Dependency{
+			{
+				Ref:          "p1",
+				Dependencies: &[]string{"p2"},
+			},
+		}}
+	sbom, err := ToSyftModel(&cyclonedx_bom)
+	assert.Nil(t, err)
+	assert.Len(t, sbom.Relationships, 1)
+	relationship := sbom.Relationships[0]
+
+	// check that p2 -- dependency of --> p1
+	// same as p1 -- depends on --> p2
+	assert.Equal(t, artifact.DependencyOfRelationship, relationship.Type)
+	assert.Equal(t, "package-2", packageNameFromIdentifier(sbom, relationship.From))
+	assert.Equal(t, "package-1", packageNameFromIdentifier(sbom, relationship.To))
+}
+
+func packageNameFromIdentifier(model *sbom.SBOM, identifier artifact.Identifiable) string {
+	return model.Artifacts.Packages.Package(identifier.ID()).Name
+}
+
 func Test_missingDataDecode(t *testing.T) {
 	bom := &cyclonedx.BOM{
 		Metadata:    nil,
@@ -279,8 +322,7 @@ func Test_missingDataDecode(t *testing.T) {
 			},
 		},
 	})
-
-	assert.Len(t, pkg.Licenses, 0)
+	assert.Equal(t, pkg.Licenses.Empty(), true)
 }
 
 func Test_missingComponentsDecode(t *testing.T) {

syft/formats/common/cyclonedxhelpers/external_references_test.go

@@ -50,7 +50,7 @@ func Test_encodeExternalReferences(t *testing.T) {
 				Language:     pkg.Rust,
 				Type:         pkg.RustPkg,
 				MetadataType: pkg.RustCargoPackageMetadataType,
-				Licenses:     nil,
+				Licenses:     pkg.NewLicenseSet(),
 				Metadata: pkg.CargoPackageMetadata{
 					Name:     "ansi_term",
 					Version:  "0.12.1",

syft/formats/common/cyclonedxhelpers/format.go

@@ -25,7 +25,7 @@ func ToFormatModel(s sbom.SBOM) *cyclonedx.BOM {
 	cdxBOM.SerialNumber = uuid.New().URN()
 	cdxBOM.Metadata = toBomDescriptor(internal.ApplicationName, s.Descriptor.Version, s.Source)
 
-	packages := s.Artifacts.PackageCatalog.Sorted()
+	packages := s.Artifacts.Packages.Sorted()
 	components := make([]cyclonedx.Component, len(packages))
 	for i, p := range packages {
 		components[i] = encodeComponent(p)

syft/formats/common/cyclonedxhelpers/licenses.go

@@ -1,46 +1,205 @@
 package cyclonedxhelpers
 
 import (
+	"fmt"
+	"strings"
+
 	"github.com/CycloneDX/cyclonedx-go"
 
 	"github.com/anchore/syft/internal/spdxlicense"
 	"github.com/anchore/syft/syft/pkg"
 )
 
+// This should be a function that just surfaces licenses already validated in the package struct
 func encodeLicenses(p pkg.Package) *cyclonedx.Licenses {
-	lc := cyclonedx.Licenses{}
-	for _, licenseName := range p.Licenses {
-		if value, other, exists := spdxlicense.ID(licenseName); exists {
-			lc = append(lc, cyclonedx.LicenseChoice{
+	spdxc, otherc, ex := separateLicenses(p)
+	if len(otherc) > 0 {
+		// found non spdx related licenses
+		// build individual license choices for each
+		// complex expressions are not combined and set as NAME fields
+		for _, e := range ex {
+			otherc = append(otherc, cyclonedx.LicenseChoice{
 				License: &cyclonedx.License{
-					ID:   value,
-					Name: other,
+					Name: e,
+				},
+			})
+		}
+		otherc = append(otherc, spdxc...)
+		return &otherc
+	}
+
+	if len(spdxc) > 0 {
+		for _, l := range ex {
+			spdxc = append(spdxc, cyclonedx.LicenseChoice{
+				License: &cyclonedx.License{
+					Name: l,
+				},
+			})
+		}
+		return &spdxc
+	}
+
+	if len(ex) > 0 {
+		// only expressions found
+		var expressions cyclonedx.Licenses
+		expressions = append(expressions, cyclonedx.LicenseChoice{
+			Expression: mergeSPDX(ex),
+		})
+		return &expressions
+	}
+
+	return nil
+}
+
+func decodeLicenses(c *cyclonedx.Component) []pkg.License {
+	licenses := make([]pkg.License, 0)
+	if c == nil || c.Licenses == nil {
+		return licenses
+	}
+
+	for _, l := range *c.Licenses {
+		if l.License == nil {
+			continue
+		}
+		// these fields are mutually exclusive in the spec
+		switch {
+		case l.License.ID != "":
+			licenses = append(licenses, pkg.NewLicenseFromURLs(l.License.ID, l.License.URL))
+		case l.License.Name != "":
+			licenses = append(licenses, pkg.NewLicenseFromURLs(l.License.Name, l.License.URL))
+		case l.Expression != "":
+			licenses = append(licenses, pkg.NewLicenseFromURLs(l.Expression, l.License.URL))
+		default:
+		}
+	}
+
+	return licenses
+}
+
+// nolint:funlen
+func separateLicenses(p pkg.Package) (spdx, other cyclonedx.Licenses, expressions []string) {
+	ex := make([]string, 0)
+	spdxc := cyclonedx.Licenses{}
+	otherc := cyclonedx.Licenses{}
+	/*
+			pkg.License can be a couple of things: see above declarations
+			- Complex SPDX expression
+			- Some other Valid license ID
+			- Some non-standard non spdx license
+
+			To determine if an expression is a singular ID we first run it against the SPDX license list.
+
+		The weird case we run into is if there is a package with a license that is not a valid SPDX expression
+			and a license that is a valid complex expression. In this case we will surface the valid complex expression
+			as a license choice and the invalid expression as a license string.
+
+	*/
+	seen := make(map[string]bool)
+	for _, l := range p.Licenses.ToSlice() {
+		// singular expression case
+		// only ID field here since we guarantee that the license is valid
+		if value, exists := spdxlicense.ID(l.SPDXExpression); exists {
+			if !l.URLs.Empty() {
+				processLicenseURLs(l, value, &spdxc)
+				continue
+			}
+
+			if _, exists := seen[value]; exists {
+				continue
+			}
+			// try making set of license choices to avoid duplicates
+			// only update if the license has more information
+			spdxc = append(spdxc, cyclonedx.LicenseChoice{
+				License: &cyclonedx.License{
+					ID: value,
+				},
+			})
+			seen[value] = true
+			// we have added the license to the SPDX license list check next license
+			continue
+		}
+
+		if l.SPDXExpression != "" {
+			// COMPLEX EXPRESSION CASE
+			ex = append(ex, l.SPDXExpression)
+			continue
+		}
+
+		// license string that are not valid spdx expressions or ids
+		// we only use license Name here since we cannot guarantee that the license is a valid SPDX expression
+		if !l.URLs.Empty() {
+			processLicenseURLs(l, "", &otherc)
+			continue
+		}
+		otherc = append(otherc, cyclonedx.LicenseChoice{
+			License: &cyclonedx.License{
+				Name: l.Value,
+			},
+		})
+	}
+	return spdxc, otherc, ex
+}
+
+func processLicenseURLs(l pkg.License, spdxID string, populate *cyclonedx.Licenses) {
+	for _, url := range l.URLs.ToSlice() {
+		if spdxID == "" {
+			*populate = append(*populate, cyclonedx.LicenseChoice{
+				License: &cyclonedx.License{
+					URL:  url,
+					Name: l.Value,
+				},
+			})
+		} else {
+			*populate = append(*populate, cyclonedx.LicenseChoice{
+				License: &cyclonedx.License{
+					ID:  spdxID,
+					URL: url,
 				},
 			})
 		}
 	}
-	if len(lc) > 0 {
-		return &lc
-	}
-	return nil
 }
 
-func decodeLicenses(c *cyclonedx.Component) (out []string) {
-	if c.Licenses != nil {
-		for _, l := range *c.Licenses {
-			if l.License != nil {
-				var lic string
-				switch {
-				case l.License.ID != "":
-					lic = l.License.ID
-				case l.License.Name != "":
-					lic = l.License.Name
-				default:
-					continue
-				}
-				out = append(out, lic)
-			}
+func mergeSPDX(ex []string) string {
+	var candidate []string
+	for _, e := range ex {
+		// if the expression does not have balanced parens add them
+		if !strings.HasPrefix(e, "(") && !strings.HasSuffix(e, ")") {
+			e = "(" + e + ")"
+			candidate = append(candidate, e)
 		}
 	}
-	return
+
+	if len(candidate) == 1 {
+		return reduceOuter(strings.Join(candidate, " AND "))
+	}
+
+	return strings.Join(candidate, " AND ")
+}
+
+func reduceOuter(expression string) string {
+	var (
+		sb        strings.Builder
+		openCount int
+	)
+
+	for _, c := range expression {
+		if string(c) == "(" && openCount > 0 {
+			fmt.Fprintf(&sb, "%c", c)
+		}
+		if string(c) == "(" {
+			openCount++
+			continue
+		}
+		if string(c) == ")" && openCount > 1 {
+			fmt.Fprintf(&sb, "%c", c)
+		}
+		if string(c) == ")" {
+			openCount--
+			continue
+		}
+		fmt.Fprintf(&sb, "%c", c)
+	}
+
+	return sb.String()
 }

syft/formats/common/cyclonedxhelpers/licenses_test.go

@@ -6,6 +6,8 @@ import (
 	"github.com/CycloneDX/cyclonedx-go"
 	"github.com/stretchr/testify/assert"
 
+	"github.com/anchore/syft/internal"
+	"github.com/anchore/syft/syft/license"
 	"github.com/anchore/syft/syft/pkg"
 )
 
@@ -23,60 +25,170 @@ func Test_encodeLicense(t *testing.T) {
 		{
 			name: "no SPDX licenses",
 			input: pkg.Package{
-				Licenses: []string{
-					"made-up",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("RandomLicense"),
+				),
 			},
 			expected: &cyclonedx.Licenses{
-				{License: &cyclonedx.License{Name: "made-up"}},
+				{
+					License: &cyclonedx.License{
+						Name: "RandomLicense",
+					},
+				},
 			},
 		},
 		{
-			name: "with SPDX license",
+			name: "single SPDX ID and Non SPDX ID",
 			input: pkg.Package{
-				Licenses: []string{
-					"MIT",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("mit"),
+					pkg.NewLicense("FOOBAR"),
+				),
 			},
 			expected: &cyclonedx.Licenses{
-				{License: &cyclonedx.License{ID: "MIT"}},
+				{
+					License: &cyclonedx.License{
+						Name: "FOOBAR",
+					},
+				},
+				{
+					License: &cyclonedx.License{
+						ID: "MIT",
+					},
+				},
 			},
 		},
 		{
-			name: "with SPDX license expression",
+			name: "with complex SPDX license expression",
 			input: pkg.Package{
-				Licenses: []string{
-					"MIT",
-					"GPL-3.0",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("MIT AND GPL-3.0-only"),
+				),
 			},
 			expected: &cyclonedx.Licenses{
-				{License: &cyclonedx.License{ID: "MIT"}},
-				{License: &cyclonedx.License{ID: "GPL-3.0-only"}},
+				{
+					Expression: "MIT AND GPL-3.0-only",
+				},
 			},
 		},
 		{
-			name: "cap insensitive",
+			name: "with multiple complex SPDX license expression",
 			input: pkg.Package{
-				Licenses: []string{
-					"gpl-3.0",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("MIT AND GPL-3.0-only"),
+					pkg.NewLicense("MIT AND GPL-3.0-only WITH Classpath-exception-2.0"),
+				),
 			},
 			expected: &cyclonedx.Licenses{
-				{License: &cyclonedx.License{ID: "GPL-3.0-only"}},
+				{
+					Expression: "(MIT AND GPL-3.0-only) AND (MIT AND GPL-3.0-only WITH Classpath-exception-2.0)",
+				},
 			},
 		},
 		{
-			name: "debian to spdx conversion",
+			name: "with multiple URLs and expressions",
 			input: pkg.Package{
-				Licenses: []string{
-					"GPL-2",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicenseFromURLs("MIT", "https://opensource.org/licenses/MIT", "https://spdx.org/licenses/MIT.html"),
+					pkg.NewLicense("MIT AND GPL-3.0-only"),
+					pkg.NewLicenseFromURLs("FakeLicense", "htts://someurl.com"),
+				),
 			},
 			expected: &cyclonedx.Licenses{
-				{License: &cyclonedx.License{ID: "GPL-2.0-only"}},
+				{
+					License: &cyclonedx.License{
+						Name: "FakeLicense",
+						URL:  "htts://someurl.com",
+					},
+				},
+				{
+					License: &cyclonedx.License{
+						Name: "MIT AND GPL-3.0-only",
+					},
+				},
+				{
+					License: &cyclonedx.License{
+						ID:  "MIT",
+						URL: "https://opensource.org/licenses/MIT",
+					},
+				},
+				{
+					License: &cyclonedx.License{
+						ID:  "MIT",
+						URL: "https://spdx.org/licenses/MIT.html",
+					},
+				},
 			},
 		},
+		{
+			name: "with multiple values licenses are deduplicated",
+			input: pkg.Package{
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("Apache-2"),
+					pkg.NewLicense("Apache-2.0"),
+				),
+			},
+			expected: &cyclonedx.Licenses{
+				{
+					License: &cyclonedx.License{
+						ID: "Apache-2.0",
+					},
+				},
+			},
+		},
+		{
+			name: "with multiple URLs and single with no URLs",
+			input: pkg.Package{
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("MIT"),
+					pkg.NewLicenseFromURLs("MIT", "https://opensource.org/licenses/MIT", "https://spdx.org/licenses/MIT.html"),
+					pkg.NewLicense("MIT AND GPL-3.0-only"),
+				),
+			},
+			expected: &cyclonedx.Licenses{
+				{
+					License: &cyclonedx.License{
+						ID:  "MIT",
+						URL: "https://opensource.org/licenses/MIT",
+					},
+				},
+				{
+					License: &cyclonedx.License{
+						ID:  "MIT",
+						URL: "https://spdx.org/licenses/MIT.html",
+					},
+				},
+				{
+					License: &cyclonedx.License{
+						Name: "MIT AND GPL-3.0-only",
+					},
+				},
+			},
+		},
+		// TODO: do we drop the non SPDX ID license and do a single expression
+		// OR do we keep the non SPDX ID license and do multiple licenses where the complex
+		// expressions are set as the NAME field?
+		//{
+		//	name: "with multiple complex SPDX license expression and a non spdx id",
+		//	input: pkg.Package{
+		//		Licenses: []pkg.License{
+		//			{
+		//				SPDXExpression: "MIT AND GPL-3.0-only",
+		//			},
+		//			{
+		//				SPDXExpression: "MIT AND GPL-3.0-only WITH Classpath-exception-2.0",
+		//			},
+		//			{
+		//				Value: "FOOBAR",
+		//			},
+		//		},
+		//	},
+		//	expected: &cyclonedx.Licenses{
+		//		{
+		//			Expression: "(MIT AND GPL-3.0-only) AND (MIT AND GPL-3.0-only WITH Classpath-exception-2.0)",
+		//		},
+		//	},
+		//},
 	}
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
@@ -84,3 +196,81 @@ func Test_encodeLicense(t *testing.T) {
 		})
 	}
 }
+
+func TestDecodeLicenses(t *testing.T) {
+	tests := []struct {
+		name     string
+		input    *cyclonedx.Component
+		expected []pkg.License
+	}{
+		{
+			name:     "no licenses",
+			input:    &cyclonedx.Component{},
+			expected: []pkg.License{},
+		},
+		{
+			name: "no SPDX license ID or expression",
+			input: &cyclonedx.Component{
+				Licenses: &cyclonedx.Licenses{
+					{
+						License: &cyclonedx.License{
+							Name: "RandomLicense",
+						},
+					},
+				},
+			},
+			expected: []pkg.License{
+				{
+					Value: "RandomLicense",
+					// CycloneDX specification doesn't give a field for determining the license type
+					Type: license.Declared,
+					URLs: internal.NewStringSet(),
+				},
+			},
+		},
+		{
+			name: "with SPDX license ID",
+			input: &cyclonedx.Component{
+				Licenses: &cyclonedx.Licenses{
+					{
+						License: &cyclonedx.License{
+							ID: "MIT",
+						},
+					},
+				},
+			},
+			expected: []pkg.License{
+				{
+					Value:          "MIT",
+					SPDXExpression: "MIT",
+					Type:           license.Declared,
+					URLs:           internal.NewStringSet(),
+				},
+			},
+		},
+		{
+			name: "with complex SPDX license expression",
+			input: &cyclonedx.Component{
+				Licenses: &cyclonedx.Licenses{
+					{
+						License:    &cyclonedx.License{},
+						Expression: "MIT AND GPL-3.0-only WITH Classpath-exception-2.0",
+					},
+				},
+			},
+			expected: []pkg.License{
+				{
+					Value:          "MIT AND GPL-3.0-only WITH Classpath-exception-2.0",
+					SPDXExpression: "MIT AND GPL-3.0-only WITH Classpath-exception-2.0",
+					Type:           license.Declared,
+					URLs:           internal.NewStringSet(),
+				},
+			},
+		},
+	}
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			assert.Equal(t, test.expected, decodeLicenses(test.input))
+		})
+	}
+}

syft/formats/common/spdxhelpers/license.go

@@ -4,10 +4,11 @@ import (
 	"strings"
 
 	"github.com/anchore/syft/internal/spdxlicense"
+	"github.com/anchore/syft/syft/license"
 	"github.com/anchore/syft/syft/pkg"
 )
 
-func License(p pkg.Package) string {
+func License(p pkg.Package) (concluded, declared string) {
 	// source: https://spdx.github.io/spdx-spec/3-package-information/#313-concluded-license
 	// The options to populate this field are limited to:
 	// A valid SPDX License Expression as defined in Appendix IV;
@@ -17,29 +18,70 @@ func License(p pkg.Package) string {
 	//   (ii) the SPDX file creator has made no attempt to determine this field; or
 	//   (iii) the SPDX file creator has intentionally provided no information (no meaning should be implied by doing so).
 
-	if len(p.Licenses) == 0 {
-		return NONE
+	if p.Licenses.Empty() {
+		return NOASSERTION, NOASSERTION
 	}
 
-	// take all licenses and assume an AND expression; for information about license expressions see https://spdx.github.io/spdx-spec/appendix-IV-SPDX-license-expressions/
-	parsedLicenses := parseLicenses(p.Licenses)
+	// take all licenses and assume an AND expression;
+	// for information about license expressions see:
+	// https://spdx.github.io/spdx-spec/v2.3/SPDX-license-expressions/
+	pc, pd := parseLicenses(p.Licenses.ToSlice())
 
-	if len(parsedLicenses) == 0 {
+	for i, v := range pc {
+		if strings.HasPrefix(v, spdxlicense.LicenseRefPrefix) {
+			pc[i] = SanitizeElementID(v)
+		}
+	}
+
+	for i, v := range pd {
+		if strings.HasPrefix(v, spdxlicense.LicenseRefPrefix) {
+			pd[i] = SanitizeElementID(v)
+		}
+	}
+
+	return joinLicenses(pc), joinLicenses(pd)
+}
+
+func joinLicenses(licenses []string) string {
+	if len(licenses) == 0 {
 		return NOASSERTION
 	}
 
-	return strings.Join(parsedLicenses, " AND ")
+	var newLicenses []string
+
+	for _, v := range licenses {
+		// check if license does not start or end with parens
+		if !strings.HasPrefix(v, "(") && !strings.HasSuffix(v, ")") {
+			// if license contains AND, OR, or WITH, then wrap in parens
+			if strings.Contains(v, " AND ") ||
+				strings.Contains(v, " OR ") ||
+				strings.Contains(v, " WITH ") {
+				newLicenses = append(newLicenses, "("+v+")")
+				continue
+			}
+		}
+		newLicenses = append(newLicenses, v)
+	}
+
+	return strings.Join(newLicenses, " AND ")
 }
 
-func parseLicenses(raw []string) (parsedLicenses []string) {
+func parseLicenses(raw []pkg.License) (concluded, declared []string) {
 	for _, l := range raw {
-		if value, other, exists := spdxlicense.ID(l); exists {
-			parsed := value
-			if other != "" {
-				parsed = spdxlicense.LicenseRefPrefix + other
-			}
-			parsedLicenses = append(parsedLicenses, parsed)
+		var candidate string
+		if l.SPDXExpression != "" {
+			candidate = l.SPDXExpression
+		} else {
+			// we did not find a valid SPDX license ID so treat as separate license
+			candidate = spdxlicense.LicenseRefPrefix + l.Value
+		}
+
+		switch l.Type {
+		case license.Concluded:
+			concluded = append(concluded, candidate)
+		case license.Declared:
+			declared = append(declared, candidate)
 		}
 	}
-	return
+	return concluded, declared
 }

syft/formats/common/spdxhelpers/license_test.go

@@ -9,66 +9,120 @@ import (
 )
 
 func Test_License(t *testing.T) {
+	type expected struct {
+		concluded string
+		declared  string
+	}
 	tests := []struct {
 		name     string
 		input    pkg.Package
-		expected string
+		expected expected
 	}{
 		{
-			name:     "no licenses",
-			input:    pkg.Package{},
-			expected: NONE,
+			name:  "no licenses",
+			input: pkg.Package{},
+			expected: expected{
+				concluded: "NOASSERTION",
+				declared:  "NOASSERTION",
+			},
 		},
 		{
 			name: "no SPDX licenses",
 			input: pkg.Package{
-				Licenses: []string{
-					"made-up",
-				},
+				Licenses: pkg.NewLicenseSet(pkg.NewLicense("made-up")),
+			},
+			expected: expected{
+				concluded: "NOASSERTION",
+				declared:  "LicenseRef-made-up",
 			},
-			expected: "LicenseRef-made-up",
 		},
 		{
 			name: "with SPDX license",
 			input: pkg.Package{
-				Licenses: []string{
-					"MIT",
-				},
+				Licenses: pkg.NewLicenseSet(pkg.NewLicense("MIT")),
+			},
+			expected: struct {
+				concluded string
+				declared  string
+			}{
+				concluded: "NOASSERTION",
+				declared:  "MIT",
 			},
-			expected: "MIT",
 		},
 		{
 			name: "with SPDX license expression",
 			input: pkg.Package{
-				Licenses: []string{
-					"MIT",
-					"GPL-3.0",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("MIT"),
+					pkg.NewLicense("GPL-3.0-only"),
+				),
+			},
+			expected: expected{
+				concluded: "NOASSERTION",
+				// because we sort licenses alphabetically GPL ends up at the start
+				declared: "GPL-3.0-only AND MIT",
 			},
-			expected: "MIT AND GPL-3.0-only",
 		},
 		{
-			name: "cap insensitive",
+			name: "includes valid LicenseRef-",
 			input: pkg.Package{
-				Licenses: []string{
-					"gpl-3.0",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("one thing first"),
+					pkg.NewLicense("two things/#$^second"),
+					pkg.NewLicense("MIT"),
+				),
+			},
+			expected: expected{
+				concluded: "NOASSERTION",
+				// because we separate licenses between valid SPDX and non valid, valid ID always end at the front
+				declared: "MIT AND LicenseRef-one-thing-first AND LicenseRef-two-things----second",
 			},
-			expected: "GPL-3.0-only",
 		},
 		{
-			name: "debian to spdx conversion",
+			name: "join parentheses correctly",
 			input: pkg.Package{
-				Licenses: []string{
-					"GPL-2",
-				},
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("one thing first"),
+					pkg.NewLicense("MIT AND GPL-3.0-only"),
+					pkg.NewLicense("MIT OR APACHE-2.0"),
+				),
+			},
+			expected: expected{
+				concluded: "NOASSERTION",
+				// because we separate licenses between valid SPDX and non valid, valid ID always end at the front
+				declared: "(MIT AND GPL-3.0-only) AND (MIT OR APACHE-2.0) AND LicenseRef-one-thing-first",
 			},
-			expected: "GPL-2.0-only",
 		},
 	}
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
-			assert.Equal(t, test.expected, License(test.input))
+			c, d := License(test.input)
+			assert.Equal(t, test.expected.concluded, c)
+			assert.Equal(t, test.expected.declared, d)
+		})
+	}
+}
+
+func Test_joinLicenses(t *testing.T) {
+	tests := []struct {
+		name string
+		args []string
+		want string
+	}{
+		{
+			name: "multiple licenses",
+			args: []string{"MIT", "GPL-3.0-only"},
+			want: "MIT AND GPL-3.0-only",
+		},
+		{
+			name: "multiple licenses with complex expressions",
+			args: []string{"MIT AND Apache", "GPL-3.0-only"},
+			want: "(MIT AND Apache) AND GPL-3.0-only",
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			assert.Equalf(t, tt.want, joinLicenses(tt.args), "joinLicenses(%v)", tt.args)
 		})
 	}
 }

syft/formats/common/spdxhelpers/source_info.go

@@ -6,6 +6,7 @@ import (
 	"github.com/anchore/syft/syft/pkg"
 )
 
+//nolint:funlen
 func SourceInfo(p pkg.Package) string {
 	answer := ""
 	switch p.Type {
@@ -45,6 +46,14 @@ func SourceInfo(p pkg.Package) string {
 		answer = "acquired package info from cabal or stack manifest files"
 	case pkg.HexPkg:
 		answer = "acquired package info from rebar3 or mix manifest file"
+	case pkg.LinuxKernelPkg:
+		answer = "acquired package info from linux kernel archive"
+	case pkg.LinuxKernelModulePkg:
+		answer = "acquired package info from linux kernel module files"
+	case pkg.NixPkg:
+		answer = "acquired package info from nix store path"
+	case pkg.Rpkg:
+		answer = "acquired package info from R-package DESCRIPTION file"
 	default:
 		answer = "acquired package info from the following paths"
 	}

syft/formats/common/spdxhelpers/source_info_test.go

@@ -199,6 +199,38 @@ func Test_SourceInfo(t *testing.T) {
 				"from rebar3 or mix manifest file",
 			},
 		},
+		{
+			input: pkg.Package{
+				Type: pkg.LinuxKernelPkg,
+			},
+			expected: []string{
+				"from linux kernel archive",
+			},
+		},
+		{
+			input: pkg.Package{
+				Type: pkg.LinuxKernelModulePkg,
+			},
+			expected: []string{
+				"from linux kernel module files",
+			},
+		},
+		{
+			input: pkg.Package{
+				Type: pkg.NixPkg,
+			},
+			expected: []string{
+				"from nix store path",
+			},
+		},
+		{
+			input: pkg.Package{
+				Type: pkg.Rpkg,
+			},
+			expected: []string{
+				"acquired package info from R-package DESCRIPTION file",
+			},
+		},
 	}
 	var pkgTypes []pkg.Type
 	for _, test := range tests {

syft/formats/common/spdxhelpers/to_format_model.go

@@ -4,11 +4,14 @@ package spdxhelpers
 import (
 	"crypto/sha1"
 	"fmt"
+	"path"
 	"sort"
 	"strings"
 	"time"
 
 	"github.com/spdx/tools-golang/spdx"
+	"golang.org/x/exp/maps"
+	"golang.org/x/exp/slices"
 
 	"github.com/anchore/syft/internal"
 	"github.com/anchore/syft/internal/log"
@@ -121,28 +124,45 @@ func ToFormatModel(s sbom.SBOM) *spdx.Document {
 			// Cardinality: optional, one
 			CreatorComment: "",
 		},
-		Packages:      toPackages(s.Artifacts.PackageCatalog, s),
+		Packages:      toPackages(s.Artifacts.Packages, s),
 		Files:         toFiles(s),
 		Relationships: relationships,
-		OtherLicenses: toOtherLicenses(s.Artifacts.PackageCatalog),
+		OtherLicenses: toOtherLicenses(s.Artifacts.Packages),
 	}
 }
 
 func toSPDXID(identifiable artifact.Identifiable) spdx.ElementID {
+	maxLen := 40
 	id := ""
-	if p, ok := identifiable.(pkg.Package); ok {
-		id = SanitizeElementID(fmt.Sprintf("Package-%+v-%s-%s", p.Type, p.Name, p.ID()))
-	} else {
+	switch it := identifiable.(type) {
+	case pkg.Package:
+		id = SanitizeElementID(fmt.Sprintf("Package-%s-%s-%s", it.Type, it.Name, it.ID()))
+	case source.Coordinates:
+		p := ""
+		parts := strings.Split(it.RealPath, "/")
+		for i := len(parts); i > 0; i-- {
+			part := parts[i-1]
+			if len(part) == 0 {
+				continue
+			}
+			if i < len(parts) && len(p)+len(part)+3 > maxLen {
+				p = "..." + p
+				break
+			}
+			p = path.Join(part, p)
+		}
+		id = SanitizeElementID(fmt.Sprintf("File-%s-%s", p, it.ID()))
+	default:
 		id = string(identifiable.ID())
 	}
-	// NOTE: the spdx libraries prepend SPDXRef-, so we don't do it here
+	// NOTE: the spdx library prepend SPDXRef-, so we don't do it here
 	return spdx.ElementID(id)
 }
 
-// packages populates all Package Information from the package Catalog (see https://spdx.github.io/spdx-spec/3-package-information/)
+// packages populates all Package Information from the package Collection (see https://spdx.github.io/spdx-spec/3-package-information/)
 //
 //nolint:funlen
-func toPackages(catalog *pkg.Catalog, sbom sbom.SBOM) (results []*spdx.Package) {
+func toPackages(catalog *pkg.Collection, sbom sbom.SBOM) (results []*spdx.Package) {
 	for _, p := range catalog.Sorted() {
 		// name should be guaranteed to be unique, but semantically useful and stable
 		id := toSPDXID(p)
@@ -150,7 +170,8 @@ func toPackages(catalog *pkg.Catalog, sbom sbom.SBOM) (results []*spdx.Package)
 		// If the Concluded License is not the same as the Declared License, a written explanation should be provided
 		// in the Comments on License field (section 7.16). With respect to NOASSERTION, a written explanation in
 		// the Comments on License field (section 7.16) is preferred.
-		license := License(p)
+		// extract these correctly to the spdx license format
+		concluded, declared := License(p)
 
 		// two ways to get filesAnalyzed == true:
 		// 1. syft has generated a sha1 digest for the package itself - usually in the java cataloger
@@ -254,7 +275,7 @@ func toPackages(catalog *pkg.Catalog, sbom sbom.SBOM) (results []*spdx.Package)
 			// Cardinality: mandatory, one
 			// Purpose: Contain the license the SPDX file creator has concluded as governing the
 			// package or alternative values, if the governing license cannot be determined.
-			PackageLicenseConcluded: license,
+			PackageLicenseConcluded: concluded,
 
 			// 7.14: All Licenses Info from Files: SPDX License Expression, "NONE" or "NOASSERTION"
 			// Cardinality: mandatory, one or many if filesAnalyzed is true / omitted;
@@ -266,7 +287,7 @@ func toPackages(catalog *pkg.Catalog, sbom sbom.SBOM) (results []*spdx.Package)
 			// Purpose: List the licenses that have been declared by the authors of the package.
 			// Any license information that does not originate from the package authors, e.g. license
 			// information from a third party repository, should not be included in this field.
-			PackageLicenseDeclared: license,
+			PackageLicenseDeclared: declared,
 
 			// 7.16: Comments on License
 			// Cardinality: optional, one
@@ -406,6 +427,8 @@ func lookupRelationship(ty artifact.RelationshipType) (bool, RelationshipType, s
 		return true, DependencyOfRelationship, ""
 	case artifact.OwnershipByFileOverlapRelationship:
 		return true, OtherRelationship, fmt.Sprintf("%s: indicates that the parent package claims ownership of a child package since the parent metadata indicates overlap with a location that a cataloger found the child package by", ty)
+	case artifact.EvidentByRelationship:
+		return true, OtherRelationship, fmt.Sprintf("%s: indicates the package's existence is evident by the given file", ty)
 	}
 	return false, "", ""
 }
@@ -512,23 +535,35 @@ func toFileTypes(metadata *source.FileMetadata) (ty []string) {
 	return ty
 }
 
-func toOtherLicenses(catalog *pkg.Catalog) []*spdx.OtherLicense {
+// other licenses are for licenses from the pkg.Package that do not have an SPDXExpression
+// field. The spdxexpression field is only filled given a validated Value field.
+func toOtherLicenses(catalog *pkg.Collection) []*spdx.OtherLicense {
 	licenses := map[string]bool{}
-	for _, pkg := range catalog.Sorted() {
-		for _, license := range parseLicenses(pkg.Licenses) {
+	for _, p := range catalog.Sorted() {
+		declaredLicenses, concludedLicenses := parseLicenses(p.Licenses.ToSlice())
+		for _, license := range declaredLicenses {
+			if strings.HasPrefix(license, spdxlicense.LicenseRefPrefix) {
+				licenses[license] = true
+			}
+		}
+		for _, license := range concludedLicenses {
 			if strings.HasPrefix(license, spdxlicense.LicenseRefPrefix) {
 				licenses[license] = true
 			}
 		}
 	}
+
 	var result []*spdx.OtherLicense
-	for license := range licenses {
-		// separate the actual ID from the prefix
+
+	sorted := maps.Keys(licenses)
+	slices.Sort(sorted)
+	for _, license := range sorted {
+		// separate the found value from the prefix
+		// this only contains licenses that are not found on the SPDX License List
 		name := strings.TrimPrefix(license, spdxlicense.LicenseRefPrefix)
 		result = append(result, &spdx.OtherLicense{
-			LicenseIdentifier: license,
-			LicenseName:       name,
-			ExtractedText:     NONE, // we probably should have some extracted text here, but this is good enough for now
+			LicenseIdentifier: SanitizeElementID(license),
+			ExtractedText:     name,
 		})
 	}
 	return result

syft/formats/common/spdxhelpers/to_format_model_test.go

@@ -2,6 +2,7 @@ package spdxhelpers
 
 import (
 	"fmt"
+	"regexp"
 	"testing"
 
 	"github.com/spdx/tools-golang/spdx"
@@ -209,6 +210,12 @@ func Test_lookupRelationship(t *testing.T) {
 			ty:      OtherRelationship,
 			comment: "ownership-by-file-overlap: indicates that the parent package claims ownership of a child package since the parent metadata indicates overlap with a location that a cataloger found the child package by",
 		},
+		{
+			input:   artifact.EvidentByRelationship,
+			exists:  true,
+			ty:      OtherRelationship,
+			comment: "evident-by: indicates the package's existence is evident by the given file",
+		},
 		{
 			input:  "made-up",
 			exists: false,
@@ -369,7 +376,7 @@ func Test_fileIDsForPackage(t *testing.T) {
 }
 
 func Test_H1Digest(t *testing.T) {
-	sbom := sbom.SBOM{}
+	s := sbom.SBOM{}
 	tests := []struct {
 		name           string
 		pkg            pkg.Package
@@ -415,8 +422,8 @@ func Test_H1Digest(t *testing.T) {
 
 	for _, test := range tests {
 		t.Run(test.name, func(t *testing.T) {
-			catalog := pkg.NewCatalog(test.pkg)
-			pkgs := toPackages(catalog, sbom)
+			catalog := pkg.NewCollection(test.pkg)
+			pkgs := toPackages(catalog, s)
 			require.Len(t, pkgs, 1)
 			for _, p := range pkgs {
 				if test.expectedDigest == "" {
@@ -431,3 +438,101 @@ func Test_H1Digest(t *testing.T) {
 		})
 	}
 }
+
+func Test_OtherLicenses(t *testing.T) {
+	tests := []struct {
+		name     string
+		pkg      pkg.Package
+		expected []*spdx.OtherLicense
+	}{
+		{
+			name: "no licenseRef",
+			pkg: pkg.Package{
+				Licenses: pkg.NewLicenseSet(),
+			},
+			expected: nil,
+		},
+		{
+			name: "single licenseRef",
+			pkg: pkg.Package{
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("foobar"),
+				),
+			},
+			expected: []*spdx.OtherLicense{
+				{
+					LicenseIdentifier: "LicenseRef-foobar",
+					ExtractedText:     "foobar",
+				},
+			},
+		},
+		{
+			name: "multiple licenseRef",
+			pkg: pkg.Package{
+				Licenses: pkg.NewLicenseSet(
+					pkg.NewLicense("internal made up license name"),
+					pkg.NewLicense("new apple license 2.0"),
+				),
+			},
+			expected: []*spdx.OtherLicense{
+				{
+					LicenseIdentifier: "LicenseRef-internal-made-up-license-name",
+					ExtractedText:     "internal made up license name",
+				},
+				{
+					LicenseIdentifier: "LicenseRef-new-apple-license-2.0",
+					ExtractedText:     "new apple license 2.0",
+				},
+			},
+		},
+	}
+
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			catalog := pkg.NewCollection(test.pkg)
+			otherLicenses := toOtherLicenses(catalog)
+			require.Len(t, otherLicenses, len(test.expected))
+			require.Equal(t, test.expected, otherLicenses)
+		})
+	}
+}
+
+func Test_toSPDXID(t *testing.T) {
+	tests := []struct {
+		name     string
+		it       artifact.Identifiable
+		expected string
+	}{
+		{
+			name: "short filename",
+			it: source.Coordinates{
+				RealPath: "/short/path/file.txt",
+			},
+			expected: "File-short-path-file.txt",
+		},
+		{
+			name: "long filename",
+			it: source.Coordinates{
+				RealPath: "/some/long/path/with/a/lot/of-text/that-contains-a/file.txt",
+			},
+			expected: "File-...a-lot-of-text-that-contains-a-file.txt",
+		},
+		{
+			name: "package",
+			it: pkg.Package{
+				Type: pkg.NpmPkg,
+				Name: "some-package",
+			},
+			expected: "Package-npm-some-package",
+		},
+	}
+
+	for _, test := range tests {
+		t.Run(test.name, func(t *testing.T) {
+			got := string(toSPDXID(test.it))
+			// trim the hash
+			got = regexp.MustCompile(`-[a-z0-9]*$`).ReplaceAllString(got, "")
+			require.Equal(t, test.expected, got)
+		})
+	}
+}

syft/formats/common/spdxhelpers/to_syft_model.go

@@ -14,6 +14,7 @@ import (
 	"github.com/anchore/syft/syft/cpe"
 	"github.com/anchore/syft/syft/file"
 	"github.com/anchore/syft/syft/formats/common/util"
+	"github.com/anchore/syft/syft/license"
 	"github.com/anchore/syft/syft/linux"
 	"github.com/anchore/syft/syft/pkg"
 	"github.com/anchore/syft/syft/sbom"
@@ -33,7 +34,7 @@ func ToSyftModel(doc *spdx.Document) (*sbom.SBOM, error) {
 	s := &sbom.SBOM{
 		Source: src,
 		Artifacts: sbom.Artifacts{
-			PackageCatalog:    pkg.NewCatalog(),
+			Packages:          pkg.NewCollection(),
 			FileMetadata:      map[source.Coordinates]source.FileMetadata{},
 			FileDigests:       map[source.Coordinates][]file.Digest{},
 			LinuxDistribution: findLinuxReleaseByPURL(doc),
@@ -110,7 +111,7 @@ func collectSyftPackages(s *sbom.SBOM, spdxIDMap map[string]interface{}, doc *sp
 	for _, p := range doc.Packages {
 		syftPkg := toSyftPackage(p)
 		spdxIDMap[string(p.PackageSPDXIdentifier)] = syftPkg
-		s.Artifacts.PackageCatalog.Add(*syftPkg)
+		s.Artifacts.Packages.Add(*syftPkg)
 	}
 }
 
@@ -176,9 +177,16 @@ func toSyftRelationships(spdxIDMap map[string]interface{}, doc *spdx.Document) [
 		var to artifact.Identifiable
 		var typ artifact.RelationshipType
 		if toLocationOk {
-			if r.Relationship == string(ContainsRelationship) {
+			switch RelationshipType(r.Relationship) {
+			case ContainsRelationship:
 				typ = artifact.ContainsRelationship
 				to = toLocation
+			case OtherRelationship:
+				// Encoding uses a specifically formatted comment...
+				if strings.Index(r.RelationshipComment, string(artifact.EvidentByRelationship)) == 0 {
+					typ = artifact.EvidentByRelationship
+					to = toLocation
+				}
 			}
 		} else {
 			switch RelationshipType(r.Relationship) {
@@ -188,7 +196,7 @@ func toSyftRelationships(spdxIDMap map[string]interface{}, doc *spdx.Document) [
 			case OtherRelationship:
 				// Encoding uses a specifically formatted comment...
 				if strings.Index(r.RelationshipComment, string(artifact.OwnershipByFileOverlapRelationship)) == 0 {
-					typ = artifact.DependencyOfRelationship
+					typ = artifact.OwnershipByFileOverlapRelationship
 					to = toPackage
 				}
 			}
@@ -220,10 +228,8 @@ func toSyftCoordinates(f *spdx.File) source.Coordinates {
 }
 
 func toSyftLocation(f *spdx.File) *source.Location {
-	return &source.Location{
-		Coordinates: toSyftCoordinates(f),
-		VirtualPath: f.FileName,
-	}
+	l := source.NewVirtualLocationFromCoordinates(toSyftCoordinates(f), f.FileName)
+	return &l
 }
 
 func requireAndTrimPrefix(val interface{}, prefix string) string {
@@ -274,7 +280,7 @@ func toSyftPackage(p *spdx.Package) *pkg.Package {
 		Type:         info.typ,
 		Name:         p.PackageName,
 		Version:      p.PackageVersion,
-		Licenses:     parseLicense(p.PackageLicenseDeclared),
+		Licenses:     pkg.NewLicenseSet(parseSPDXLicenses(p)...),
 		CPEs:         extractCPEs(p),
 		PURL:         info.purl.String(),
 		Language:     info.lang,
@@ -287,6 +293,33 @@ func toSyftPackage(p *spdx.Package) *pkg.Package {
 	return &sP
 }
 
+func parseSPDXLicenses(p *spdx.Package) []pkg.License {
+	licenses := make([]pkg.License, 0)
+
+	// concluded
+	if p.PackageLicenseConcluded != NOASSERTION && p.PackageLicenseConcluded != NONE && p.PackageLicenseConcluded != "" {
+		l := pkg.NewLicense(cleanSPDXID(p.PackageLicenseConcluded))
+		l.Type = license.Concluded
+		licenses = append(licenses, l)
+	}
+
+	// declared
+	if p.PackageLicenseDeclared != NOASSERTION && p.PackageLicenseDeclared != NONE && p.PackageLicenseDeclared != "" {
+		l := pkg.NewLicense(cleanSPDXID(p.PackageLicenseDeclared))
+		l.Type = license.Declared
+		licenses = append(licenses, l)
+	}
+
+	return licenses
+}
+
+func cleanSPDXID(id string) string {
+	if strings.HasPrefix(id, "LicenseRef-") {
+		return strings.TrimPrefix(id, "LicenseRef-")
+	}
+	return id
+}
+
 //nolint:funlen
 func extractMetadata(p *spdx.Package, info pkgInfo) (pkg.MetadataType, interface{}) {
 	arch := info.qualifierValue(pkg.PURLQualifierArch)
@@ -312,7 +345,6 @@ func extractMetadata(p *spdx.Package, info pkgInfo) (pkg.MetadataType, interface
 			OriginPackage: upstreamName,
 			Maintainer:    supplier,
 			Version:       p.PackageVersion,
-			License:       p.PackageLicenseDeclared,
 			Architecture:  arch,
 			URL:           p.PackageHomePage,
 			Description:   p.PackageDescription,
@@ -325,17 +357,12 @@ func extractMetadata(p *spdx.Package, info pkgInfo) (pkg.MetadataType, interface
 		} else {
 			epoch = &converted
 		}
-		license := p.PackageLicenseDeclared
-		if license == "" {
-			license = p.PackageLicenseConcluded
-		}
 		return pkg.RpmMetadataType, pkg.RpmMetadata{
 			Name:      p.PackageName,
 			Version:   p.PackageVersion,
 			Epoch:     epoch,
 			Arch:      arch,
 			SourceRpm: upstreamValue,
-			License:   license,
 			Vendor:    originator,
 		}
 	case pkg.DebPkg:
@@ -395,10 +422,3 @@ func extractCPEs(p *spdx.Package) (cpes []cpe.CPE) {
 	}
 	return cpes
 }
-
-func parseLicense(l string) []string {
-	if l == NOASSERTION || l == NONE {
-		return nil
-	}
-	return strings.Split(l, " AND ")
-}

syft/formats/common/spdxhelpers/to_syft_model_test.go

@@ -4,9 +4,11 @@ import (
 	"testing"
 
 	"github.com/spdx/tools-golang/spdx"
+	"github.com/spdx/tools-golang/spdx/v2/common"
 	"github.com/stretchr/testify/assert"
 	"github.com/stretchr/testify/require"
 
+	"github.com/anchore/syft/syft/artifact"
 	"github.com/anchore/syft/syft/pkg"
 	"github.com/anchore/syft/syft/source"
 )
@@ -89,7 +91,7 @@ func TestToSyftModel(t *testing.T) {
 
 	assert.NotNil(t, sbom)
 
-	pkgs := sbom.Artifacts.PackageCatalog.Sorted()
+	pkgs := sbom.Artifacts.Packages.Sorted()
 
 	assert.Len(t, pkgs, 2)
 
@@ -307,3 +309,113 @@ func TestH1Digest(t *testing.T) {
 		})
 	}
 }
+
+func Test_toSyftRelationships(t *testing.T) {
+	type args struct {
+		spdxIDMap map[string]interface{}
+		doc       *spdx.Document
+	}
+
+	pkg1 := pkg.Package{
+		Name:    "github.com/googleapis/gnostic",
+		Version: "v0.5.5",
+	}
+	pkg1.SetID()
+
+	pkg2 := pkg.Package{
+		Name:    "rfc3339",
+		Version: "1.2",
+		Type:    pkg.RpmPkg,
+	}
+	pkg2.SetID()
+
+	pkg3 := pkg.Package{
+		Name:    "rfc3339",
+		Version: "1.2",
+		Type:    pkg.PythonPkg,
+	}
+	pkg3.SetID()
+
+	loc1 := source.NewLocationFromCoordinates(source.Coordinates{
+		RealPath:     "/somewhere/real",
+		FileSystemID: "abc",
+	})
+
+	tests := []struct {
+		name string
+		args args
+		want []artifact.Relationship
+	}{
+		{
+			name: "evident-by relationship",
+			args: args{
+				spdxIDMap: map[string]interface{}{
+					string(toSPDXID(pkg1)): &pkg1,
+					string(toSPDXID(loc1)): &loc1,
+				},
+				doc: &spdx.Document{
+					Relationships: []*spdx.Relationship{
+						{
+							RefA: common.DocElementID{
+								ElementRefID: toSPDXID(pkg1),
+							},
+							RefB: common.DocElementID{
+								ElementRefID: toSPDXID(loc1),
+							},
+							Relationship:        spdx.RelationshipOther,
+							RelationshipComment: "evident-by: indicates the package's existence is evident by the given file",
+						},
+					},
+				},
+			},
+			want: []artifact.Relationship{
+				{
+					From: pkg1,
+					To:   loc1,
+					Type: artifact.EvidentByRelationship,
+				},
+			},
+		},
+		{
+			name: "ownership-by-file-overlap relationship",
+			args: args{
+				spdxIDMap: map[string]interface{}{
+					string(toSPDXID(pkg2)): &pkg2,
+					string(toSPDXID(pkg3)): &pkg3,
+				},
+				doc: &spdx.Document{
+					Relationships: []*spdx.Relationship{
+						{
+							RefA: common.DocElementID{
+								ElementRefID: toSPDXID(pkg2),
+							},
+							RefB: common.DocElementID{
+								ElementRefID: toSPDXID(pkg3),
+							},
+							Relationship:        spdx.RelationshipOther,
+							RelationshipComment: "ownership-by-file-overlap: indicates that the parent package claims ownership of a child package since the parent metadata indicates overlap with a location that a cataloger found the child package by",
+						},
+					},
+				},
+			},
+			want: []artifact.Relationship{
+				{
+					From: pkg2,
+					To:   pkg3,
+					Type: artifact.OwnershipByFileOverlapRelationship,
+				},
+			},
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			actual := toSyftRelationships(tt.args.spdxIDMap, tt.args.doc)
+			require.Len(t, actual, len(tt.want))
+			for i := range actual {
+				require.Equal(t, tt.want[i].From.ID(), actual[i].From.ID())
+				require.Equal(t, tt.want[i].To.ID(), actual[i].To.ID())
+				require.Equal(t, tt.want[i].Type, actual[i].Type)
+			}
+		})
+	}
+}

syft/formats/cyclonedxjson/decoder_test.go

@@ -57,7 +57,7 @@ func Test_decodeJSON(t *testing.T) {
 				split = strings.SplitN(pkg, ":", 2)
 				name = split[0]
 				version = split[1]
-				for p := range bom.Artifacts.PackageCatalog.Enumerate() {
+				for p := range bom.Artifacts.Packages.Enumerate() {
 					if p.Name == name {
 						assert.Equal(t, version, p.Version)
 						continue pkgs

syft/formats/cyclonedxjson/encoder_test.go

@@ -33,14 +33,18 @@ func TestCycloneDxImageEncoder(t *testing.T) {
 }
 
 func cycloneDxRedactor(s []byte) []byte {
-	serialPattern := regexp.MustCompile(`urn:uuid:[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}`)
-	rfc3339Pattern := regexp.MustCompile(`([0-9]+)-(0[1-9]|1[012])-(0[1-9]|[12][0-9]|3[01])[Tt]([01][0-9]|2[0-3]):([0-5][0-9]):([0-5][0-9]|60)(\.[0-9]+)?(([Zz])|([+|\-]([01][0-9]|2[0-3]):[0-5][0-9]))`)
-	sha256Pattern := regexp.MustCompile(`sha256:[A-Fa-f0-9]{64}`)
-	for _, pattern := range []*regexp.Regexp{serialPattern, rfc3339Pattern, sha256Pattern} {
-		s = pattern.ReplaceAll(s, []byte(""))
+	replacements := map[string]string{
+		// UUIDs
+		`urn:uuid:[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}`: `urn:uuid:redacted`,
+		// timestamps
+		`([0-9]+)-(0[1-9]|1[012])-(0[1-9]|[12][0-9]|3[01])[Tt]([01][0-9]|2[0-3]):([0-5][0-9]):([0-5][0-9]|60)(\.[0-9]+)?(([Zz])|([+|\-]([01][0-9]|2[0-3]):[0-5][0-9]))`: `timestamp:redacted`,
+		// image hashes
+		`sha256:[A-Fa-f0-9]{64}`: `sha256:redacted`,
+		// bom-refs
+		`"bom-ref":\s*"[^"]+"`: `"bom-ref": "redacted"`,
+	}
+	for pattern, replacement := range replacements {
+		s = regexp.MustCompile(pattern).ReplaceAll(s, []byte(replacement))
 	}
-	// the bom-ref will be autogenerated every time, the value here should not be directly tested in snapshot tests
-	s = regexp.MustCompile(`\s+"bom-ref":\s*"[^"]+",?\n`).ReplaceAll(s, []byte(""))
-
 	return s
 }

syft/formats/cyclonedxjson/test-fixtures/snapshot/TestCycloneDxDirectoryEncoder.golden

@@ -1,10 +1,11 @@
 {
+  "$schema": "http://cyclonedx.org/schema/bom-1.4.schema.json",
   "bomFormat": "CycloneDX",
   "specVersion": "1.4",
-  "serialNumber": "urn:uuid:0b628da1-274e-4c24-821c-f9452f37db54",
+  "serialNumber": "urn:uuid:1b71a5b4-4bc5-4548-a51a-212e631976cd",
   "version": 1,
   "metadata": {
-    "timestamp": "2022-12-22T18:33:51-05:00",
+    "timestamp": "2023-05-08T14:40:32-04:00",
     "tools": [
       {
         "vendor": "anchore",
@@ -20,7 +21,7 @@
   },
   "components": [
     {
-      "bom-ref": "1b1d0be59ac59d2c",
+      "bom-ref": "8c7e1242588c971a",
       "type": "library",
       "name": "package-1",
       "version": "1.0.1",

syft/formats/cyclonedxjson/test-fixtures/snapshot/TestCycloneDxImageEncoder.golden

@@ -1,10 +1,11 @@
 {
+  "$schema": "http://cyclonedx.org/schema/bom-1.4.schema.json",
   "bomFormat": "CycloneDX",
   "specVersion": "1.4",
-  "serialNumber": "urn:uuid:542fc1a1-81ac-4b76-b9e2-8e6b9d8c840a",
+  "serialNumber": "urn:uuid:1695d6ae-0ddf-4e77-9c9d-74df1bdd8d5b",
   "version": 1,
   "metadata": {
-    "timestamp": "2022-12-22T18:33:51-05:00",
+    "timestamp": "2023-05-08T14:40:32-04:00",
     "tools": [
       {
         "vendor": "anchore",
@@ -13,7 +14,7 @@
       }
     ],
     "component": {
-      "bom-ref": "ffd645a093c0fe70",
+      "bom-ref": "38160ebc2a6876e8",
       "type": "container",
       "name": "user-image-input",
       "version": "sha256:2731251dc34951c0e50fcc643b4c5f74922dad1a5d98f302b504cf46cd5d9368"
@@ -21,7 +22,7 @@
   },
   "components": [
     {
-      "bom-ref": "66ba429119b8bec6",
+      "bom-ref": "ec2e0c93617507ef",
       "type": "library",
       "name": "package-1",
       "version": "1.0.1",
@@ -53,7 +54,7 @@
         },
         {
           "name": "syft:location:0:layerID",
-          "value": "sha256:62058900d4ce269c900160b8dd255fe310c3a459dda236d041102fa070f84406"
+          "value": "sha256:ab62016f9bec7286af65604081564cadeeb364a48faca2346c3f5a5a1f5ef777"
         },
         {
           "name": "syft:location:0:path",
@@ -83,7 +84,7 @@
         },
         {
           "name": "syft:location:0:layerID",
-          "value": "sha256:623ad97366f39ae279f1925673cdacb4851ddf2e3266f04e63010ec080a098c1"
+          "value": "sha256:f1803845b6747d94d6e4ecce2331457e5f1c4fb97de5216f392a76f4582f63b2"
         },
         {
           "name": "syft:location:0:path",

syft/formats/cyclonedxxml/decoder_test.go

@@ -7,6 +7,7 @@ import (
 	"testing"
 
 	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
 )
 
 func Test_decodeXML(t *testing.T) {
@@ -34,7 +35,7 @@ func Test_decodeXML(t *testing.T) {
 	for _, test := range tests {
 		t.Run(test.file, func(t *testing.T) {
 			reader, err := os.Open("test-fixtures/" + test.file)
-			assert.NoError(t, err)
+			require.NoError(t, err)
 
 			if test.err {
 				err = Format().Validate(reader)
@@ -44,7 +45,7 @@ func Test_decodeXML(t *testing.T) {
 
 			bom, err := Format().Decode(reader)
 
-			assert.NoError(t, err)
+			require.NoError(t, err)
 
 			split := strings.SplitN(test.distro, ":", 2)
 			name := split[0]
@@ -57,7 +58,7 @@ func Test_decodeXML(t *testing.T) {
 				split = strings.SplitN(pkg, ":", 2)
 				name = split[0]
 				version = split[1]
-				for p := range bom.Artifacts.PackageCatalog.Enumerate() {
+				for p := range bom.Artifacts.Packages.Enumerate() {
 					if p.Name == name {
 						assert.Equal(t, version, p.Version)
 						continue pkgs

syft/formats/cyclonedxxml/test-fixtures/snapshot/TestCycloneDxDirectoryEncoder.golden

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<bom xmlns="http://cyclonedx.org/schema/bom/1.4" serialNumber="urn:uuid:2939b822-b9cb-489d-8a8b-4431b755031d" version="1">
+<bom xmlns="http://cyclonedx.org/schema/bom/1.4" serialNumber="urn:uuid:60f4e726-e884-4ae3-9b0e-18a918fbb02e" version="1">
   <metadata>
-    <timestamp>2022-11-07T09:11:06-05:00</timestamp>
+    <timestamp>2023-05-08T14:40:52-04:00</timestamp>
     <tools>
       <tool>
         <vendor>anchore</vendor>
@@ -14,7 +14,7 @@
     </component>
   </metadata>
   <components>
-    <component bom-ref="1b1d0be59ac59d2c" type="library">
+    <component bom-ref="8c7e1242588c971a" type="library">
       <name>package-1</name>
       <version>1.0.1</version>
       <licenses>

syft/formats/cyclonedxxml/test-fixtures/snapshot/TestCycloneDxImageEncoder.golden

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<bom xmlns="http://cyclonedx.org/schema/bom/1.4" serialNumber="urn:uuid:2896b5ce-2016-49e8-a422-239d662846c7" version="1">
+<bom xmlns="http://cyclonedx.org/schema/bom/1.4" serialNumber="urn:uuid:c8894728-c156-4fc5-8f5d-3e397eede5a7" version="1">
   <metadata>
-    <timestamp>2022-11-07T09:11:06-05:00</timestamp>
+    <timestamp>2023-05-08T14:40:52-04:00</timestamp>
     <tools>
       <tool>
         <vendor>anchore</vendor>
@@ -9,13 +9,13 @@
         <version>v0.42.0-bogus</version>
       </tool>
     </tools>
-    <component bom-ref="522dc6b135a55bb4" type="container">
+    <component bom-ref="38160ebc2a6876e8" type="container">
       <name>user-image-input</name>
       <version>sha256:2731251dc34951c0e50fcc643b4c5f74922dad1a5d98f302b504cf46cd5d9368</version>
     </component>
   </metadata>
   <components>
-    <component bom-ref="66ba429119b8bec6" type="library">
+    <component bom-ref="ec2e0c93617507ef" type="library">
       <name>package-1</name>
       <version>1.0.1</version>
       <licenses>
@@ -30,7 +30,7 @@
         <property name="syft:package:language">python</property>
         <property name="syft:package:metadataType">PythonPackageMetadata</property>
         <property name="syft:package:type">python</property>
-        <property name="syft:location:0:layerID">sha256:fb6beecb75b39f4bb813dbf177e501edd5ddb3e69bb45cedeb78c676ee1b7a59</property>
+        <property name="syft:location:0:layerID">sha256:ab62016f9bec7286af65604081564cadeeb364a48faca2346c3f5a5a1f5ef777</property>
         <property name="syft:location:0:path">/somefile-1.txt</property>
       </properties>
     </component>
@@ -43,7 +43,7 @@
         <property name="syft:package:foundBy">the-cataloger-2</property>
         <property name="syft:package:metadataType">DpkgMetadata</property>
         <property name="syft:package:type">deb</property>
-        <property name="syft:location:0:layerID">sha256:319b588ce64253a87b533c8ed01cf0025e0eac98e7b516e12532957e1244fdec</property>
+        <property name="syft:location:0:layerID">sha256:f1803845b6747d94d6e4ecce2331457e5f1c4fb97de5216f392a76f4582f63b2</property>
         <property name="syft:location:0:path">/somefile-2.txt</property>
         <property name="syft:metadata:installedSize">0</property>
       </properties>

syft/formats/formats.go

@@ -85,14 +85,9 @@ func versionMatches(version string, match string) bool {
 		return true
 	}
 
-	dots := strings.Count(match, ".")
-	if dots == 0 {
-		match += ".*"
-	}
 	match = strings.ReplaceAll(match, ".", "\\.")
 	match = strings.ReplaceAll(match, "*", ".*")
-	match = strings.ReplaceAll(match, "\\..*", "(\\..*)*")
-	match = fmt.Sprintf("^%s$", match)
+	match = fmt.Sprintf("^%s(\\..*)*$", match)
 	matcher, err := regexp.Compile(match)
 	if err != nil {
 		return false

syft/formats/formats_test.go

@@ -227,12 +227,61 @@ func Test_versionMatches(t *testing.T) {
 			match:   "3.1",
 			matches: true,
 		},
+		{
+			name:    "wildcard-version matches minor",
+			version: "7.1.3",
+			match:   "7.*",
+			matches: true,
+		},
+		{
+			name:    "wildcard-version matches patch",
+			version: "7.4.8",
+			match:   "7.4.*",
+			matches: true,
+		},
+		{
+			name:    "sub-version matches major",
+			version: "7.19.11",
+			match:   "7",
+			matches: true,
+		},
+		{
+			name:    "sub-version matches minor",
+			version: "7.55.2",
+			match:   "7.55",
+			matches: true,
+		},
+		{
+			name:    "sub-version matches patch",
+			version: "7.32.6",
+			match:   "7.32.6",
+			matches: true,
+		},
+		// negative tests
 		{
 			name:    "different number does not match",
 			version: "3",
 			match:   "4",
 			matches: false,
 		},
+		{
+			name:    "sub-version doesn't match major",
+			version: "7.2.5",
+			match:   "8.2.5",
+			matches: false,
+		},
+		{
+			name:    "sub-version doesn't match minor",
+			version: "7.2.9",
+			match:   "7.1",
+			matches: false,
+		},
+		{
+			name:    "sub-version doesn't match patch",
+			version: "7.32.6",
+			match:   "7.32.5",
+			matches: false,
+		},
 	}
 
 	for _, test := range tests {

syft/formats/github/encoder.go

@@ -107,7 +107,7 @@ func toPath(s source.Metadata, p pkg.Package) string {
 func toGithubManifests(s *sbom.SBOM) Manifests {
 	manifests := map[string]*Manifest{}
 
-	for _, p := range s.Artifacts.PackageCatalog.Sorted() {
+	for _, p := range s.Artifacts.Packages.Sorted() {
 		path := toPath(s.Source, p)
 		manifest, ok := manifests[path]
 		if !ok {

syft/formats/github/encoder_test.go

@@ -28,7 +28,7 @@ func Test_toGithubModel(t *testing.T) {
 				VersionID: "18.04",
 				IDLike:    []string{"debian"},
 			},
-			PackageCatalog: pkg.NewCatalog(),
+			Packages: pkg.NewCollection(),
 		},
 	}
 	for _, p := range []pkg.Package{
@@ -36,36 +36,30 @@ func Test_toGithubModel(t *testing.T) {
 			Name:    "pkg-1",
 			Version: "1.0.1",
 			Locations: source.NewLocationSet(
-				source.Location{
-					Coordinates: source.Coordinates{
-						RealPath:     "/usr/lib",
-						FileSystemID: "fsid-1",
-					},
-				},
+				source.NewLocationFromCoordinates(source.Coordinates{
+					RealPath:     "/usr/lib",
+					FileSystemID: "fsid-1",
+				}),
 			),
 		},
 		{
 			Name:    "pkg-2",
 			Version: "2.0.2",
 			Locations: source.NewLocationSet(
-				source.Location{
-					Coordinates: source.Coordinates{
-						RealPath:     "/usr/lib",
-						FileSystemID: "fsid-1",
-					},
-				},
+				source.NewLocationFromCoordinates(source.Coordinates{
+					RealPath:     "/usr/lib",
+					FileSystemID: "fsid-1",
+				}),
 			),
 		},
 		{
 			Name:    "pkg-3",
 			Version: "3.0.3",
 			Locations: source.NewLocationSet(
-				source.Location{
-					Coordinates: source.Coordinates{
-						RealPath:     "/etc",
-						FileSystemID: "fsid-1",
-					},
-				},
+				source.NewLocationFromCoordinates(source.Coordinates{
+					RealPath:     "/etc",
+					FileSystemID: "fsid-1",
+				}),
 			),
 		},
 	} {
@@ -77,7 +71,7 @@ func Test_toGithubModel(t *testing.T) {
 			nil,
 			"",
 		).ToString()
-		s.Artifacts.PackageCatalog.Add(p)
+		s.Artifacts.Packages.Add(p)
 	}
 
 	actual := toGithubModel(&s)